| Definition | Trichodesmium erythraeum IMS101 chromosome, complete genome. |
|---|---|
| Accession | NC_008312 |
| Length | 7,750,108 |
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The map label for this gene is 113474253
Identifier: 113474253
GI number: 113474253
Start: 572415
End: 573554
Strand: Reverse
Name: 113474253
Synonym: Tery_0372
Alternate gene names: NA
Gene position: 573554-572415 (Counterclockwise)
Preceding gene: 113474254
Following gene: 113474252
Centisome position: 7.4
GC content: 39.39
Gene sequence:
>1140_bases ATGAATATGTTATTAAATAAACCTGAGATATTTGCTAGTCTAACTATTTGTTTATTAGCTTCTGTGAGTGCTTGCGCCAA TAATCCTGCCAGCAAAGAATTAGAGCAAATTTTTGCAGCAGATCCCCAGTTAAAAAATAATCCTCCCTTTAACCAATTAA TTCAAAGCTCTAGCCCAAACAACCAACAAACAGAAAAAACAGTACAACTTCCGACTAATTTTCCTCTAGAAAATTCCCCA ACTCCTAACTCCGAGTTGCTGGATAAATCTGAACCTGCCAGAATTTCAACTTTACTACCAACTCCCCAAGCAAAAACTCA ACCATTACCCCAAGTATTGCCCACACCTTTACCTACTTCCACGGCATCGGCACTATCAACACCGACATCATCTCCCCCTA ATATTATCCCTCCAGTACTTACTCCCATACCTTCAAGTTCTCGTCCATTGAAAATGGCTCTTAAGGATGTGCCTACAGGT TTACGTCCATACATTGCAGATTTGTCCAAGTTGGGGCTATTTCCACAGGAAGAACTTAACAATCAATATAATCCCGATGG GACAACTATGTTAGTTAAACCTCAAAATCTTGTGAGTCGGCGTGTATATGCTAGATGGTTAGTCAGTGCAAATAATAAGA TGTTTACTAATAATTCTGCTAAACATATCCGATTAGCTAGAGCAAATGAAAAACAGATTTTTCAAGATGTGCCAAAAACT GACCCTGACTTTGCTGTAATTCAAGGTTTGGCAGAGGCCGGTTTAATTCCTAGTCCTTTATTTGGAGATGTTAATTTGCT CAAGTTTCGCCCAGATGATTTTTTAACTCGTGAGGATTTAATTCTTTGGAAAGTGCCCTTAGATTTTCGCAAGCCATTAC CAGAAGCTACAATAGAGAAAATTAAGGCTGTTTGGGACTTTCAAGACGCTTCTAAAATTAATCCTATTGCTTTGAAGGCA GTATTAGCAGATGGTGGGAATAAGTTTTCTAATATTCGCCGGGTTTTTGGTTATACTAAATTGTTTAGGCCAGATAAAAC TGTAAGTCGGGCTGAGGCTGCTGCTGTCTTATGGTATTTTGGGGACCAGAAAGATGGTATATCGGCTCAGATGGTCTTGG AGGCCAAGGGACAATCCTAG
Upstream 100 bases:
>100_bases TTTGTAAGATTACTTTATCAGTTCATCTCACACCAAATTGAAAATTATGGTATGAGATGAACCAATGATTTAGCTAAAAA TACTAAGTAAATTTCTTTGT
Downstream 100 bases:
>100_bases TTGGAATTTATAGTAAGAAGGTTAATAGTTTGTGCTCCTAAACTAGGTTAGGAGTATGTCAAGCAACCAATCCAGACCTT TGTTCCTGATGGTTTCAATG
Product: hypothetical protein
Products: NA
Alternate protein names: S-Layer Region-Like Protein; S-Layer Domain Protein; S-Layer Region-Like; S Layer Domain-Containing Protein
Number of amino acids: Translated: 379; Mature: 379
Protein sequence:
>379_residues MNMLLNKPEIFASLTICLLASVSACANNPASKELEQIFAADPQLKNNPPFNQLIQSSSPNNQQTEKTVQLPTNFPLENSP TPNSELLDKSEPARISTLLPTPQAKTQPLPQVLPTPLPTSTASALSTPTSSPPNIIPPVLTPIPSSSRPLKMALKDVPTG LRPYIADLSKLGLFPQEELNNQYNPDGTTMLVKPQNLVSRRVYARWLVSANNKMFTNNSAKHIRLARANEKQIFQDVPKT DPDFAVIQGLAEAGLIPSPLFGDVNLLKFRPDDFLTREDLILWKVPLDFRKPLPEATIEKIKAVWDFQDASKINPIALKA VLADGGNKFSNIRRVFGYTKLFRPDKTVSRAEAAAVLWYFGDQKDGISAQMVLEAKGQS
Sequences:
>Translated_379_residues MNMLLNKPEIFASLTICLLASVSACANNPASKELEQIFAADPQLKNNPPFNQLIQSSSPNNQQTEKTVQLPTNFPLENSP TPNSELLDKSEPARISTLLPTPQAKTQPLPQVLPTPLPTSTASALSTPTSSPPNIIPPVLTPIPSSSRPLKMALKDVPTG LRPYIADLSKLGLFPQEELNNQYNPDGTTMLVKPQNLVSRRVYARWLVSANNKMFTNNSAKHIRLARANEKQIFQDVPKT DPDFAVIQGLAEAGLIPSPLFGDVNLLKFRPDDFLTREDLILWKVPLDFRKPLPEATIEKIKAVWDFQDASKINPIALKA VLADGGNKFSNIRRVFGYTKLFRPDKTVSRAEAAAVLWYFGDQKDGISAQMVLEAKGQS >Mature_379_residues MNMLLNKPEIFASLTICLLASVSACANNPASKELEQIFAADPQLKNNPPFNQLIQSSSPNNQQTEKTVQLPTNFPLENSP TPNSELLDKSEPARISTLLPTPQAKTQPLPQVLPTPLPTSTASALSTPTSSPPNIIPPVLTPIPSSSRPLKMALKDVPTG LRPYIADLSKLGLFPQEELNNQYNPDGTTMLVKPQNLVSRRVYARWLVSANNKMFTNNSAKHIRLARANEKQIFQDVPKT DPDFAVIQGLAEAGLIPSPLFGDVNLLKFRPDDFLTREDLILWKVPLDFRKPLPEATIEKIKAVWDFQDASKINPIALKA VLADGGNKFSNIRRVFGYTKLFRPDKTVSRAEAAAVLWYFGDQKDGISAQMVLEAKGQS
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 41770; Mature: 41770
Theoretical pI: Translated: 9.68; Mature: 9.68
Prosite motif: PS00013 PROKAR_LIPOPROTEIN
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 1.6 %Met (Translated Protein) 2.1 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 1.6 %Met (Mature Protein) 2.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNMLLNKPEIFASLTICLLASVSACANNPASKELEQIFAADPQLKNNPPFNQLIQSSSPN CCCCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCCCCCHHHHHHCCCCC NQQTEKTVQLPTNFPLENSPTPNSELLDKSEPARISTLLPTPQAKTQPLPQVLPTPLPTS CCCCHHEEECCCCCCCCCCCCCCHHHHCCCCCCEEEEECCCCCCCCCCCHHHCCCCCCCC TASALSTPTSSPPNIIPPVLTPIPSSSRPLKMALKDVPTGLRPYIADLSKLGLFPQEELN HHHHHCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCHHHHHHHHHHHCCCCHHHHC NQYNPDGTTMLVKPQNLVSRRVYARWLVSANNKMFTNNSAKHIRLARANEKQIFQDVPKT CCCCCCCCEEEECCHHHHHHHHHHHHHHHCCCEEEECCCCCEEEEECCCHHHHHHHCCCC DPDFAVIQGLAEAGLIPSPLFGDVNLLKFRPDDFLTREDLILWKVPLDFRKPLPEATIEK CCCHHHHHHHHHCCCCCCCCCCCCEEEEECCCHHCCCCCEEEEECCHHHHCCCCHHHHHH IKAVWDFQDASKINPIALKAVLADGGNKFSNIRRVFGYTKLFRPDKTVSRAEAAAVLWYF HHHHHCCCCCCCCCHHEEEEEHHCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHEEEEEEE GDQKDGISAQMVLEAKGQS CCCCCCCCEEEEEEECCCC >Mature Secondary Structure MNMLLNKPEIFASLTICLLASVSACANNPASKELEQIFAADPQLKNNPPFNQLIQSSSPN CCCCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCCCCCHHHHHHCCCCC NQQTEKTVQLPTNFPLENSPTPNSELLDKSEPARISTLLPTPQAKTQPLPQVLPTPLPTS CCCCHHEEECCCCCCCCCCCCCCHHHHCCCCCCEEEEECCCCCCCCCCCHHHCCCCCCCC TASALSTPTSSPPNIIPPVLTPIPSSSRPLKMALKDVPTGLRPYIADLSKLGLFPQEELN HHHHHCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCHHHHHHHHHHHCCCCHHHHC NQYNPDGTTMLVKPQNLVSRRVYARWLVSANNKMFTNNSAKHIRLARANEKQIFQDVPKT CCCCCCCCEEEECCHHHHHHHHHHHHHHHCCCEEEECCCCCEEEEECCCHHHHHHHCCCC DPDFAVIQGLAEAGLIPSPLFGDVNLLKFRPDDFLTREDLILWKVPLDFRKPLPEATIEK CCCHHHHHHHHHCCCCCCCCCCCCEEEEECCCHHCCCCCEEEEECCHHHHCCCCHHHHHH IKAVWDFQDASKINPIALKAVLADGGNKFSNIRRVFGYTKLFRPDKTVSRAEAAAVLWYF HHHHHCCCCCCCCCHHEEEEEHHCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHEEEEEEE GDQKDGISAQMVLEAKGQS CCCCCCCCEEEEEEECCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA