Definition Trichodesmium erythraeum IMS101 chromosome, complete genome.
Accession NC_008312
Length 7,750,108

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The map label for this gene is 113474253

Identifier: 113474253

GI number: 113474253

Start: 572415

End: 573554

Strand: Reverse

Name: 113474253

Synonym: Tery_0372

Alternate gene names: NA

Gene position: 573554-572415 (Counterclockwise)

Preceding gene: 113474254

Following gene: 113474252

Centisome position: 7.4

GC content: 39.39

Gene sequence:

>1140_bases
ATGAATATGTTATTAAATAAACCTGAGATATTTGCTAGTCTAACTATTTGTTTATTAGCTTCTGTGAGTGCTTGCGCCAA
TAATCCTGCCAGCAAAGAATTAGAGCAAATTTTTGCAGCAGATCCCCAGTTAAAAAATAATCCTCCCTTTAACCAATTAA
TTCAAAGCTCTAGCCCAAACAACCAACAAACAGAAAAAACAGTACAACTTCCGACTAATTTTCCTCTAGAAAATTCCCCA
ACTCCTAACTCCGAGTTGCTGGATAAATCTGAACCTGCCAGAATTTCAACTTTACTACCAACTCCCCAAGCAAAAACTCA
ACCATTACCCCAAGTATTGCCCACACCTTTACCTACTTCCACGGCATCGGCACTATCAACACCGACATCATCTCCCCCTA
ATATTATCCCTCCAGTACTTACTCCCATACCTTCAAGTTCTCGTCCATTGAAAATGGCTCTTAAGGATGTGCCTACAGGT
TTACGTCCATACATTGCAGATTTGTCCAAGTTGGGGCTATTTCCACAGGAAGAACTTAACAATCAATATAATCCCGATGG
GACAACTATGTTAGTTAAACCTCAAAATCTTGTGAGTCGGCGTGTATATGCTAGATGGTTAGTCAGTGCAAATAATAAGA
TGTTTACTAATAATTCTGCTAAACATATCCGATTAGCTAGAGCAAATGAAAAACAGATTTTTCAAGATGTGCCAAAAACT
GACCCTGACTTTGCTGTAATTCAAGGTTTGGCAGAGGCCGGTTTAATTCCTAGTCCTTTATTTGGAGATGTTAATTTGCT
CAAGTTTCGCCCAGATGATTTTTTAACTCGTGAGGATTTAATTCTTTGGAAAGTGCCCTTAGATTTTCGCAAGCCATTAC
CAGAAGCTACAATAGAGAAAATTAAGGCTGTTTGGGACTTTCAAGACGCTTCTAAAATTAATCCTATTGCTTTGAAGGCA
GTATTAGCAGATGGTGGGAATAAGTTTTCTAATATTCGCCGGGTTTTTGGTTATACTAAATTGTTTAGGCCAGATAAAAC
TGTAAGTCGGGCTGAGGCTGCTGCTGTCTTATGGTATTTTGGGGACCAGAAAGATGGTATATCGGCTCAGATGGTCTTGG
AGGCCAAGGGACAATCCTAG

Upstream 100 bases:

>100_bases
TTTGTAAGATTACTTTATCAGTTCATCTCACACCAAATTGAAAATTATGGTATGAGATGAACCAATGATTTAGCTAAAAA
TACTAAGTAAATTTCTTTGT

Downstream 100 bases:

>100_bases
TTGGAATTTATAGTAAGAAGGTTAATAGTTTGTGCTCCTAAACTAGGTTAGGAGTATGTCAAGCAACCAATCCAGACCTT
TGTTCCTGATGGTTTCAATG

Product: hypothetical protein

Products: NA

Alternate protein names: S-Layer Region-Like Protein; S-Layer Domain Protein; S-Layer Region-Like; S Layer Domain-Containing Protein

Number of amino acids: Translated: 379; Mature: 379

Protein sequence:

>379_residues
MNMLLNKPEIFASLTICLLASVSACANNPASKELEQIFAADPQLKNNPPFNQLIQSSSPNNQQTEKTVQLPTNFPLENSP
TPNSELLDKSEPARISTLLPTPQAKTQPLPQVLPTPLPTSTASALSTPTSSPPNIIPPVLTPIPSSSRPLKMALKDVPTG
LRPYIADLSKLGLFPQEELNNQYNPDGTTMLVKPQNLVSRRVYARWLVSANNKMFTNNSAKHIRLARANEKQIFQDVPKT
DPDFAVIQGLAEAGLIPSPLFGDVNLLKFRPDDFLTREDLILWKVPLDFRKPLPEATIEKIKAVWDFQDASKINPIALKA
VLADGGNKFSNIRRVFGYTKLFRPDKTVSRAEAAAVLWYFGDQKDGISAQMVLEAKGQS

Sequences:

>Translated_379_residues
MNMLLNKPEIFASLTICLLASVSACANNPASKELEQIFAADPQLKNNPPFNQLIQSSSPNNQQTEKTVQLPTNFPLENSP
TPNSELLDKSEPARISTLLPTPQAKTQPLPQVLPTPLPTSTASALSTPTSSPPNIIPPVLTPIPSSSRPLKMALKDVPTG
LRPYIADLSKLGLFPQEELNNQYNPDGTTMLVKPQNLVSRRVYARWLVSANNKMFTNNSAKHIRLARANEKQIFQDVPKT
DPDFAVIQGLAEAGLIPSPLFGDVNLLKFRPDDFLTREDLILWKVPLDFRKPLPEATIEKIKAVWDFQDASKINPIALKA
VLADGGNKFSNIRRVFGYTKLFRPDKTVSRAEAAAVLWYFGDQKDGISAQMVLEAKGQS
>Mature_379_residues
MNMLLNKPEIFASLTICLLASVSACANNPASKELEQIFAADPQLKNNPPFNQLIQSSSPNNQQTEKTVQLPTNFPLENSP
TPNSELLDKSEPARISTLLPTPQAKTQPLPQVLPTPLPTSTASALSTPTSSPPNIIPPVLTPIPSSSRPLKMALKDVPTG
LRPYIADLSKLGLFPQEELNNQYNPDGTTMLVKPQNLVSRRVYARWLVSANNKMFTNNSAKHIRLARANEKQIFQDVPKT
DPDFAVIQGLAEAGLIPSPLFGDVNLLKFRPDDFLTREDLILWKVPLDFRKPLPEATIEKIKAVWDFQDASKINPIALKA
VLADGGNKFSNIRRVFGYTKLFRPDKTVSRAEAAAVLWYFGDQKDGISAQMVLEAKGQS

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 41770; Mature: 41770

Theoretical pI: Translated: 9.68; Mature: 9.68

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
2.1 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
2.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNMLLNKPEIFASLTICLLASVSACANNPASKELEQIFAADPQLKNNPPFNQLIQSSSPN
CCCCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCCCCCHHHHHHCCCCC
NQQTEKTVQLPTNFPLENSPTPNSELLDKSEPARISTLLPTPQAKTQPLPQVLPTPLPTS
CCCCHHEEECCCCCCCCCCCCCCHHHHCCCCCCEEEEECCCCCCCCCCCHHHCCCCCCCC
TASALSTPTSSPPNIIPPVLTPIPSSSRPLKMALKDVPTGLRPYIADLSKLGLFPQEELN
HHHHHCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCHHHHHHHHHHHCCCCHHHHC
NQYNPDGTTMLVKPQNLVSRRVYARWLVSANNKMFTNNSAKHIRLARANEKQIFQDVPKT
CCCCCCCCEEEECCHHHHHHHHHHHHHHHCCCEEEECCCCCEEEEECCCHHHHHHHCCCC
DPDFAVIQGLAEAGLIPSPLFGDVNLLKFRPDDFLTREDLILWKVPLDFRKPLPEATIEK
CCCHHHHHHHHHCCCCCCCCCCCCEEEEECCCHHCCCCCEEEEECCHHHHCCCCHHHHHH
IKAVWDFQDASKINPIALKAVLADGGNKFSNIRRVFGYTKLFRPDKTVSRAEAAAVLWYF
HHHHHCCCCCCCCCHHEEEEEHHCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHEEEEEEE
GDQKDGISAQMVLEAKGQS
CCCCCCCCEEEEEEECCCC
>Mature Secondary Structure
MNMLLNKPEIFASLTICLLASVSACANNPASKELEQIFAADPQLKNNPPFNQLIQSSSPN
CCCCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCCCCCHHHHHHCCCCC
NQQTEKTVQLPTNFPLENSPTPNSELLDKSEPARISTLLPTPQAKTQPLPQVLPTPLPTS
CCCCHHEEECCCCCCCCCCCCCCHHHHCCCCCCEEEEECCCCCCCCCCCHHHCCCCCCCC
TASALSTPTSSPPNIIPPVLTPIPSSSRPLKMALKDVPTGLRPYIADLSKLGLFPQEELN
HHHHHCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCHHHHHHHHHHHCCCCHHHHC
NQYNPDGTTMLVKPQNLVSRRVYARWLVSANNKMFTNNSAKHIRLARANEKQIFQDVPKT
CCCCCCCCEEEECCHHHHHHHHHHHHHHHCCCEEEECCCCCEEEEECCCHHHHHHHCCCC
DPDFAVIQGLAEAGLIPSPLFGDVNLLKFRPDDFLTREDLILWKVPLDFRKPLPEATIEK
CCCHHHHHHHHHCCCCCCCCCCCCEEEEECCCHHCCCCCEEEEECCHHHHCCCCHHHHHH
IKAVWDFQDASKINPIALKAVLADGGNKFSNIRRVFGYTKLFRPDKTVSRAEAAAVLWYF
HHHHHCCCCCCCCCHHEEEEEHHCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHEEEEEEE
GDQKDGISAQMVLEAKGQS
CCCCCCCCEEEEEEECCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA