| Definition | Trichodesmium erythraeum IMS101 chromosome, complete genome. |
|---|---|
| Accession | NC_008312 |
| Length | 7,750,108 |
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The map label for this gene is 113474252
Identifier: 113474252
GI number: 113474252
Start: 570659
End: 571606
Strand: Reverse
Name: 113474252
Synonym: Tery_0371
Alternate gene names: NA
Gene position: 571606-570659 (Counterclockwise)
Preceding gene: 113474253
Following gene: 113474251
Centisome position: 7.38
GC content: 35.55
Gene sequence:
>948_bases ATGTTTGGTTTGATCATTGTTTTACTGGCATCCTTCTGTTTCTGTTTCCAAAATGTCATTGTCAGAATTCTCTTTAATGA ACAGACAATTTTAGGGATATTTGAAACCGGTGGATTTGTTATACCTAACCTACAAAATTCTTTTCTACTAATGTTTATGC GGATGGTGTTAGTAGTTCCGTTGATGGCATCCTTCGCGACAAAACTTTACCCGCTTACCTGGCAAGATATTAGAAAATTA GGAAATCATGAAGCATATCCTATGTTGGGGCGATCGCTTCTTGGTGGAGTCTTGATGTTTCTCTATTTAGCACTACTTTA TGTATCTATCGGTTTAATTGAAACTGGAATTGCTTTAACTCTGTTTTTTGCTTACCCAATATTCACTTCACTATTTTCTT GGATATTTTTGGGTATTCCTCCTACAAAGTTTCGCTGGATGATCATGGTAATTGTATTAGTTGGTACTTTTCTGACTATT CCTTACACTCAGACAACATCTGATGATTACTACAACGGAATTGGAGTAATTTTTGCCTTGGCTTCTGCAGTTGCTTATGC TCTCTATACTGTAAATGCACAAAAAAGTTTTGAAACTATACACCTAGTTCCCTTTACTTGGATTAGTTTTGCTACTACTT TAGGGTTATCTTCCATAAGTTTGTTAATCTGGCAAGGAGATAATGCAGACCTTAACTGGACTCCTATGTGGGTTGGTGGT TTCTTATCAGCGATCGTTACTTTGAGCGGTCATTTAATGTTTAATTATGGAATTAAGTTGATAGGTGCTAGTACTGCAGC AACTATTGGAGCAACTAATCCTAGTCTGACAGCAATTTTAGCATGGTTAACTATTCAAGAAACTATTAATGGTTTGCAAA TTATGGGTATTGCTATTGTTACTATGGGTATTTTATTTTTGAGTCAGGAGCATAAACGTTTATTTTAG
Upstream 100 bases:
>100_bases CTTGCCCCGCCTTTCCTAAATCGGCGTTTTTCGAGATGTCTATTGTATAAACTATTAATTTTTTTAAGCCCAAAAACTAC CATTTATTTGAACCTAGTCT
Downstream 100 bases:
>100_bases AAACAGGACTTACGCAAGTCTCCTAGATAATACCCTATCTGTAGGGAGTAAATGCCATAAAGCCACTACTATAGAGGTTT TGCATTAGTCCTGAGAAACT
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 315; Mature: 315
Protein sequence:
>315_residues MFGLIIVLLASFCFCFQNVIVRILFNEQTILGIFETGGFVIPNLQNSFLLMFMRMVLVVPLMASFATKLYPLTWQDIRKL GNHEAYPMLGRSLLGGVLMFLYLALLYVSIGLIETGIALTLFFAYPIFTSLFSWIFLGIPPTKFRWMIMVIVLVGTFLTI PYTQTTSDDYYNGIGVIFALASAVAYALYTVNAQKSFETIHLVPFTWISFATTLGLSSISLLIWQGDNADLNWTPMWVGG FLSAIVTLSGHLMFNYGIKLIGASTAATIGATNPSLTAILAWLTIQETINGLQIMGIAIVTMGILFLSQEHKRLF
Sequences:
>Translated_315_residues MFGLIIVLLASFCFCFQNVIVRILFNEQTILGIFETGGFVIPNLQNSFLLMFMRMVLVVPLMASFATKLYPLTWQDIRKL GNHEAYPMLGRSLLGGVLMFLYLALLYVSIGLIETGIALTLFFAYPIFTSLFSWIFLGIPPTKFRWMIMVIVLVGTFLTI PYTQTTSDDYYNGIGVIFALASAVAYALYTVNAQKSFETIHLVPFTWISFATTLGLSSISLLIWQGDNADLNWTPMWVGG FLSAIVTLSGHLMFNYGIKLIGASTAATIGATNPSLTAILAWLTIQETINGLQIMGIAIVTMGILFLSQEHKRLF >Mature_315_residues MFGLIIVLLASFCFCFQNVIVRILFNEQTILGIFETGGFVIPNLQNSFLLMFMRMVLVVPLMASFATKLYPLTWQDIRKL GNHEAYPMLGRSLLGGVLMFLYLALLYVSIGLIETGIALTLFFAYPIFTSLFSWIFLGIPPTKFRWMIMVIVLVGTFLTI PYTQTTSDDYYNGIGVIFALASAVAYALYTVNAQKSFETIHLVPFTWISFATTLGLSSISLLIWQGDNADLNWTPMWVGG FLSAIVTLSGHLMFNYGIKLIGASTAATIGATNPSLTAILAWLTIQETINGLQIMGIAIVTMGILFLSQEHKRLF
Specific function: Unknown
COG id: COG0697
COG function: function code GER; Permeases of the drug/metabolite transporter (DMT) superfamily
Gene ontology:
Cell location: Cell membrane; Multi-pass membrane protein (Probable) [H]
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Contains 2 DUF6 domains [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR000620 [H]
Pfam domain/function: PF00892 DUF6 [H]
EC number: NA
Molecular weight: Translated: 34989; Mature: 34989
Theoretical pI: Translated: 7.56; Mature: 7.56
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.6 %Cys (Translated Protein) 4.1 %Met (Translated Protein) 4.8 %Cys+Met (Translated Protein) 0.6 %Cys (Mature Protein) 4.1 %Met (Mature Protein) 4.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MFGLIIVLLASFCFCFQNVIVRILFNEQTILGIFETGGFVIPNLQNSFLLMFMRMVLVVP CHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCEEECCCCHHHHHHHHHHHHHHH LMASFATKLYPLTWQDIRKLGNHEAYPMLGRSLLGGVLMFLYLALLYVSIGLIETGIALT HHHHHHHHHCCCCHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH LFFAYPIFTSLFSWIFLGIPPTKFRWMIMVIVLVGTFLTIPYTQTTSDDYYNGIGVIFAL HHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHH ASAVAYALYTVNAQKSFETIHLVPFTWISFATTLGLSSISLLIWQGDNADLNWTPMWVGG HHHHHHHHHEECCCCCCCEEEEHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCHHHHHH FLSAIVTLSGHLMFNYGIKLIGASTAATIGATNPSLTAILAWLTIQETINGLQIMGIAIV HHHHHHHHHCCEEEECCEEEEECCHHHEECCCCCHHHHHHHHHHHHHHHCCHHHHHHHHH TMGILFLSQEHKRLF HHHHHHHCCHHHCCC >Mature Secondary Structure MFGLIIVLLASFCFCFQNVIVRILFNEQTILGIFETGGFVIPNLQNSFLLMFMRMVLVVP CHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCEEECCCCHHHHHHHHHHHHHHH LMASFATKLYPLTWQDIRKLGNHEAYPMLGRSLLGGVLMFLYLALLYVSIGLIETGIALT HHHHHHHHHCCCCHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH LFFAYPIFTSLFSWIFLGIPPTKFRWMIMVIVLVGTFLTIPYTQTTSDDYYNGIGVIFAL HHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHH ASAVAYALYTVNAQKSFETIHLVPFTWISFATTLGLSSISLLIWQGDNADLNWTPMWVGG HHHHHHHHHEECCCCCCCEEEEHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCHHHHHH FLSAIVTLSGHLMFNYGIKLIGASTAATIGATNPSLTAILAWLTIQETINGLQIMGIAIV HHHHHHHHHCCEEEECCEEEEECCHHHEECCCCCHHHHHHHHHHHHHHHCCHHHHHHHHH TMGILFLSQEHKRLF HHHHHHHCCHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 7.0
TargetDB status: NA
Availability: NA
References: 8905231 [H]