| Definition | Trichodesmium erythraeum IMS101 chromosome, complete genome. |
|---|---|
| Accession | NC_008312 |
| Length | 7,750,108 |
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The map label for this gene is 113474186
Identifier: 113474186
GI number: 113474186
Start: 451430
End: 452728
Strand: Reverse
Name: 113474186
Synonym: Tery_0294
Alternate gene names: NA
Gene position: 452728-451430 (Counterclockwise)
Preceding gene: 113474188
Following gene: 113474185
Centisome position: 5.84
GC content: 35.95
Gene sequence:
>1299_bases ATGAATAAATTTGAAACCTCTGATTTTTTACTACCTTTACCAGTAATGCCTTCAGAGGAAAATACATTTGCCCATTACAC AATTGTTTGTAGACTACCAGGTGTTATCGAACGAGTCATCAAAGACAATAATTTTCCTCCTCCCATTGTGCAAGAATTAG AATTTTTAGTAACAGACTTATTTGAAGGATGGGTGCGTCCTTTGAAAGATGATCAAGGGCCAGATTTAGTTGCCTGGGAA TCCTATTTAAAACCTTTTGAGGGGAAAAGTTGGTTTGATTTACCATTTTATTTTGCTGAAGCTTATTTTTTCCGGCGTTT GCTTGAGGCAACTAATTATTTTGTACCTGGAATTTGGCAAGGCATAGACCCATTTGGTTATCAAAAACGCTTGAGTTTAG AAAAATCAATGGATGCTATTAGATTTATAAGTGATAGCGTTAGGGTGGCGCAGCAATATTCCTTGACTACTTTAAGTACT ATAAAATCTGAACAACAGACTTATCAAACTTTTATAACTACTGTGCTTCAAGCTGTTTTATGGGGTGAACAATTTGATCT CACTTTATGGCAAGCTATAGCAGGAGATAATACTAATAGATATCTTACACAGCAACAAACTCACATTTTAGTAGATGATA CCTATAATCTACTCAACTACTTAAGCAATATTCAAGGGCAACGAATATATCTAATTATAACAGATAACGCAAGTTTTGAG TTAGTTGGCGATTTTTTTTTGATAGACTTCCTTTTATCTACTCAAACTGCTCATACTGTTTATCTACACTTGAAAGCATA TCCAACTTTTGTTTCTGATGCTATACATCAGGATGTCTTTTACACTCTAGAAAGGTTAGCTAATGATACCTCAGAAAATG TCCGAATTTTGGCAGCTCGTTTGCAGGAGTACATTGCTACTGGTTGTTTAATTTGTCAAGATAACCTTTTCTGGAATGCT CCTCTAGCTTTTTGGGAAATGCCAGAGTCTTTAAGGGAAGAGTTAGCTAAGGCTAGTTTAGTTGTAATTAAGGGAGATGC TAACTATCGGCGTATTTTGGGCGATCGCCATTGGCTATTTACTACACCTTTGTCAGATATTGCTAATTATTTTCCCGCAC CATTTGTCGCTTTGCGTACCCTCAAGTCAGAAGTAGCAACCAGTTTAGAACCAGATCAAATCGAAATATTAAATGAACAA GACCCTCTGTGGTTAACTAATGGTCAGTGGGGTGTAATTCAGTTTGTAATACCAGAGAAGTTGAATAATTCAGGACTTAC ACAAATACACTACATATAG
Upstream 100 bases:
>100_bases ACATTTGGTATAATTATTAATATTTTTGGACAAAGCAATGGTTATTGTGCTGTTAGTCCTGATAGTTATATTTTAGGTTA TTTCTGATTTTTTTAAATAT
Downstream 100 bases:
>100_bases TGCCCACCAATTTAGGTGATCGCTTAAATTTTTATAGCGATCGCCCGTTATTACTGATTTTTACAAATCTATAAAACTTC AATAACTGTCATTTTAATAG
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 432; Mature: 432
Protein sequence:
>432_residues MNKFETSDFLLPLPVMPSEENTFAHYTIVCRLPGVIERVIKDNNFPPPIVQELEFLVTDLFEGWVRPLKDDQGPDLVAWE SYLKPFEGKSWFDLPFYFAEAYFFRRLLEATNYFVPGIWQGIDPFGYQKRLSLEKSMDAIRFISDSVRVAQQYSLTTLST IKSEQQTYQTFITTVLQAVLWGEQFDLTLWQAIAGDNTNRYLTQQQTHILVDDTYNLLNYLSNIQGQRIYLIITDNASFE LVGDFFLIDFLLSTQTAHTVYLHLKAYPTFVSDAIHQDVFYTLERLANDTSENVRILAARLQEYIATGCLICQDNLFWNA PLAFWEMPESLREELAKASLVVIKGDANYRRILGDRHWLFTTPLSDIANYFPAPFVALRTLKSEVATSLEPDQIEILNEQ DPLWLTNGQWGVIQFVIPEKLNNSGLTQIHYI
Sequences:
>Translated_432_residues MNKFETSDFLLPLPVMPSEENTFAHYTIVCRLPGVIERVIKDNNFPPPIVQELEFLVTDLFEGWVRPLKDDQGPDLVAWE SYLKPFEGKSWFDLPFYFAEAYFFRRLLEATNYFVPGIWQGIDPFGYQKRLSLEKSMDAIRFISDSVRVAQQYSLTTLST IKSEQQTYQTFITTVLQAVLWGEQFDLTLWQAIAGDNTNRYLTQQQTHILVDDTYNLLNYLSNIQGQRIYLIITDNASFE LVGDFFLIDFLLSTQTAHTVYLHLKAYPTFVSDAIHQDVFYTLERLANDTSENVRILAARLQEYIATGCLICQDNLFWNA PLAFWEMPESLREELAKASLVVIKGDANYRRILGDRHWLFTTPLSDIANYFPAPFVALRTLKSEVATSLEPDQIEILNEQ DPLWLTNGQWGVIQFVIPEKLNNSGLTQIHYI >Mature_432_residues MNKFETSDFLLPLPVMPSEENTFAHYTIVCRLPGVIERVIKDNNFPPPIVQELEFLVTDLFEGWVRPLKDDQGPDLVAWE SYLKPFEGKSWFDLPFYFAEAYFFRRLLEATNYFVPGIWQGIDPFGYQKRLSLEKSMDAIRFISDSVRVAQQYSLTTLST IKSEQQTYQTFITTVLQAVLWGEQFDLTLWQAIAGDNTNRYLTQQQTHILVDDTYNLLNYLSNIQGQRIYLIITDNASFE LVGDFFLIDFLLSTQTAHTVYLHLKAYPTFVSDAIHQDVFYTLERLANDTSENVRILAARLQEYIATGCLICQDNLFWNA PLAFWEMPESLREELAKASLVVIKGDANYRRILGDRHWLFTTPLSDIANYFPAPFVALRTLKSEVATSLEPDQIEILNEQ DPLWLTNGQWGVIQFVIPEKLNNSGLTQIHYI
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
Organism=Homo sapiens, GI13375746, Length=354, Percent_Identity=33.3333333333333, Blast_Score=166, Evalue=5e-41, Organism=Caenorhabditis elegans, GI17560374, Length=463, Percent_Identity=27.4298056155508, Blast_Score=152, Evalue=2e-37, Organism=Saccharomyces cerevisiae, GI6323669, Length=474, Percent_Identity=22.9957805907173, Blast_Score=105, Evalue=1e-23, Organism=Drosophila melanogaster, GI24657556, Length=450, Percent_Identity=27.3333333333333, Blast_Score=147, Evalue=2e-35, Organism=Drosophila melanogaster, GI24657549, Length=450, Percent_Identity=26.6666666666667, Blast_Score=145, Evalue=4e-35, Organism=Drosophila melanogaster, GI24657542, Length=378, Percent_Identity=26.984126984127, Blast_Score=140, Evalue=2e-33, Organism=Drosophila melanogaster, GI20129541, Length=434, Percent_Identity=26.7281105990783, Blast_Score=138, Evalue=6e-33, Organism=Drosophila melanogaster, GI20130225, Length=453, Percent_Identity=25.1655629139073, Blast_Score=122, Evalue=3e-28,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 49972; Mature: 49972
Theoretical pI: Translated: 4.41; Mature: 4.41
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.7 %Cys (Translated Protein) 0.9 %Met (Translated Protein) 1.6 %Cys+Met (Translated Protein) 0.7 %Cys (Mature Protein) 0.9 %Met (Mature Protein) 1.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNKFETSDFLLPLPVMPSEENTFAHYTIVCRLPGVIERVIKDNNFPPPIVQELEFLVTDL CCCCCCCCCEEECCCCCCCCCCEEEEEEEEECHHHHHHHHHCCCCCCHHHHHHHHHHHHH FEGWVRPLKDDQGPDLVAWESYLKPFEGKSWFDLPFYFAEAYFFRRLLEATNYFVPGIWQ HHHHHCCCCCCCCCCEEEHHHHCCCCCCCCEECCHHHHHHHHHHHHHHHHHCCCCCCHHC GIDPFGYQKRLSLEKSMDAIRFISDSVRVAQQYSLTTLSTIKSEQQTYQTFITTVLQAVL CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH WGEQFDLTLWQAIAGDNTNRYLTQQQTHILVDDTYNLLNYLSNIQGQRIYLIITDNASFE CCCCCCHHHHHHHHCCCCCCEEECCCCEEEECCHHHHHHHHHCCCCCEEEEEEECCCCEE LVGDFFLIDFLLSTQTAHTVYLHLKAYPTFVSDAIHQDVFYTLERLANDTSENVRILAAR EHHHHHHHHHHHHCCCEEEEEEEEEECHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHH LQEYIATGCLICQDNLFWNAPLAFWEMPESLREELAKASLVVIKGDANYRRILGDRHWLF HHHHHHHCEEEEECCCEECCCHHHHCCCHHHHHHHHHCEEEEEECCCCHHHHHCCCCEEE TTPLSDIANYFPAPFVALRTLKSEVATSLEPDQIEILNEQDPLWLTNGQWGVIQFVIPEK ECCHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCEEEECCCCCEEEECCCCEEEEEEECCC LNNSGLTQIHYI CCCCCCCEEEEC >Mature Secondary Structure MNKFETSDFLLPLPVMPSEENTFAHYTIVCRLPGVIERVIKDNNFPPPIVQELEFLVTDL CCCCCCCCCEEECCCCCCCCCCEEEEEEEEECHHHHHHHHHCCCCCCHHHHHHHHHHHHH FEGWVRPLKDDQGPDLVAWESYLKPFEGKSWFDLPFYFAEAYFFRRLLEATNYFVPGIWQ HHHHHCCCCCCCCCCEEEHHHHCCCCCCCCEECCHHHHHHHHHHHHHHHHHCCCCCCHHC GIDPFGYQKRLSLEKSMDAIRFISDSVRVAQQYSLTTLSTIKSEQQTYQTFITTVLQAVL CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH WGEQFDLTLWQAIAGDNTNRYLTQQQTHILVDDTYNLLNYLSNIQGQRIYLIITDNASFE CCCCCCHHHHHHHHCCCCCCEEECCCCEEEECCHHHHHHHHHCCCCCEEEEEEECCCCEE LVGDFFLIDFLLSTQTAHTVYLHLKAYPTFVSDAIHQDVFYTLERLANDTSENVRILAAR EHHHHHHHHHHHHCCCEEEEEEEEEECHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHH LQEYIATGCLICQDNLFWNAPLAFWEMPESLREELAKASLVVIKGDANYRRILGDRHWLF HHHHHHHCEEEEECCCEECCCHHHHCCCHHHHHHHHHCEEEEEECCCCHHHHHCCCCEEE TTPLSDIANYFPAPFVALRTLKSEVATSLEPDQIEILNEQDPLWLTNGQWGVIQFVIPEK ECCHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCEEEECCCCCEEEECCCCEEEEEEECCC LNNSGLTQIHYI CCCCCCCEEEEC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA