| Definition | Trichodesmium erythraeum IMS101 chromosome, complete genome. |
|---|---|
| Accession | NC_008312 |
| Length | 7,750,108 |
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The map label for this gene is 113474173
Identifier: 113474173
GI number: 113474173
Start: 431013
End: 431618
Strand: Reverse
Name: 113474173
Synonym: Tery_0279
Alternate gene names: NA
Gene position: 431618-431013 (Counterclockwise)
Preceding gene: 113474174
Following gene: 113474172
Centisome position: 5.57
GC content: 38.45
Gene sequence:
>606_bases ATGAACCTAGAATTAATAGATAGTTTGACTGCCCAAGTTGGGGCAAATGGGCTTCCTTACGCTATCCCAATTCATCCAAA CTTAGTTCATCTGACTCTAGGTCTGTTTATTATGGGAATTGCTTTTGATATTGTTGGCATATTGTTCCCTCTACAAAAAC CAGTCCTGAAAGTTTTAGCGATATCTGCTACTCGTTCCAACTTTTTTGATGTAGGTTGGTACAATATGTTAGCTTCATCA ATTATCACATTTTTCACCGTAGCAGCAGGATTTTATGAAATCATGCTAGCGACACCATCTCCTGAACTTAAAAGTGTATG GGGTTTAGGAGCAATGGATACAATGTTATGGCATGGCATTGGCGGTGTGTTGCTATTAGCAATGATTATAGGTATGACGA TTTGGAGGGGATTTCAACGTTATATTTGGTCTCAGGATAAACTCCTACAAGTACAATGGAGTTATTTAGCAGTAGGTTTA GTAATCCTTTTTGTTATGTACGTTCATGGTACTTTGGGCGCACAGTTAGCAGCAGAGTTTGGAGTACATAATACTGCTGA TGCCTTGTTAGAACTAGGCAAAGATCCTAATATTGTCCTGAAATAA
Upstream 100 bases:
>100_bases GAATAGTCTGCCTTCAAGTTTACTTGGGAGATGAATTAGTTTGGGTTTATGGACTACACACAGTGCCAGTAGTGGAAGCA ATAAAGGAGGGAATTTTACA
Downstream 100 bases:
>100_bases TCTTAGTAGGATATTGATATGAAAACCCGCACTATTTTAACCTTGGGGGCGATCGCTCTCTTGTTAGCTGCTATTAGTAT TTGGATCGGGCAACTCTCCT
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 201; Mature: 201
Protein sequence:
>201_residues MNLELIDSLTAQVGANGLPYAIPIHPNLVHLTLGLFIMGIAFDIVGILFPLQKPVLKVLAISATRSNFFDVGWYNMLASS IITFFTVAAGFYEIMLATPSPELKSVWGLGAMDTMLWHGIGGVLLLAMIIGMTIWRGFQRYIWSQDKLLQVQWSYLAVGL VILFVMYVHGTLGAQLAAEFGVHNTADALLELGKDPNIVLK
Sequences:
>Translated_201_residues MNLELIDSLTAQVGANGLPYAIPIHPNLVHLTLGLFIMGIAFDIVGILFPLQKPVLKVLAISATRSNFFDVGWYNMLASS IITFFTVAAGFYEIMLATPSPELKSVWGLGAMDTMLWHGIGGVLLLAMIIGMTIWRGFQRYIWSQDKLLQVQWSYLAVGL VILFVMYVHGTLGAQLAAEFGVHNTADALLELGKDPNIVLK >Mature_201_residues MNLELIDSLTAQVGANGLPYAIPIHPNLVHLTLGLFIMGIAFDIVGILFPLQKPVLKVLAISATRSNFFDVGWYNMLASS IITFFTVAAGFYEIMLATPSPELKSVWGLGAMDTMLWHGIGGVLLLAMIIGMTIWRGFQRYIWSQDKLLQVQWSYLAVGL VILFVMYVHGTLGAQLAAEFGVHNTADALLELGKDPNIVLK
Specific function: Unknown
COG id: COG4244
COG function: function code S; Predicted membrane protein
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 22051; Mature: 22051
Theoretical pI: Translated: 6.34; Mature: 6.34
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 4.5 %Met (Translated Protein) 4.5 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 4.5 %Met (Mature Protein) 4.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNLELIDSLTAQVGANGLPYAIPIHPNLVHLTLGLFIMGIAFDIVGILFPLQKPVLKVLA CCHHHHHHHHHHHCCCCCCEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH ISATRSNFFDVGWYNMLASSIITFFTVAAGFYEIMLATPSPELKSVWGLGAMDTMLWHGI HHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHEEECCCCHHHHHHCCCHHHHHHHHHH GGVLLLAMIIGMTIWRGFQRYIWSQDKLLQVQWSYLAVGLVILFVMYVHGTLGAQLAAEF HHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH GVHNTADALLELGKDPNIVLK CCCCHHHHHHHHCCCCCEEEC >Mature Secondary Structure MNLELIDSLTAQVGANGLPYAIPIHPNLVHLTLGLFIMGIAFDIVGILFPLQKPVLKVLA CCHHHHHHHHHHHCCCCCCEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH ISATRSNFFDVGWYNMLASSIITFFTVAAGFYEIMLATPSPELKSVWGLGAMDTMLWHGI HHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHEEECCCCHHHHHHCCCHHHHHHHHHH GGVLLLAMIIGMTIWRGFQRYIWSQDKLLQVQWSYLAVGLVILFVMYVHGTLGAQLAAEF HHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH GVHNTADALLELGKDPNIVLK CCCCHHHHHHHHCCCCCEEEC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA