| Definition | Trichodesmium erythraeum IMS101 chromosome, complete genome. |
|---|---|
| Accession | NC_008312 |
| Length | 7,750,108 |
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The map label for this gene is 113474099
Identifier: 113474099
GI number: 113474099
Start: 297094
End: 297624
Strand: Reverse
Name: 113474099
Synonym: Tery_0198
Alternate gene names: NA
Gene position: 297624-297094 (Counterclockwise)
Preceding gene: 113474106
Following gene: 113474097
Centisome position: 3.84
GC content: 30.32
Gene sequence:
>531_bases ATGAAAATTAAAGCTTTAGCTCATACTATTCAACTATGTCCCCAGAGGTTGTTGTCCAGGTCTGTATTAGTAGTAACTTT GTCTACATTAGGTTTAATGATAAATATAACACCTAGATGGTTTAACCTTTCATTAGATTCTATATTTACTACAGCAGTCT ATGCTCAAGAATTACTCACAGATCAAGCCATTACTCCTGAAGAAATAAATAAATATGCTTTTTCAGTATTAAAAATTGAG AATCTAAGAATAGAAGTATATAGAGAAATTAAAAATGAATTTCAAAAACGAAGTCCCGGAGGGTCTGTTCCACCAATAAT TTGTAATGAGAAAAGTAGTGTTAATGCTTTACCAAAAAATATTCAGGTAATTGCTATGAGTTACTGCAAGCAAGCTAAAA AAATTATTGAAGGAAATGATTTGACGGTTTCTCGGTTTAATGAAATTACACAGATCCAAAGAAAAGATAAAACTTGGCGA GAAAAAATTCAAGCTGAATTAATTCGTATTCAACAACAAACTGGTAATTAA
Upstream 100 bases:
>100_bases AGATTTAATATTTGATTTACAGATACTCTCTAATCTGGAACTTTTTCAGGTTAATACAATTCTATATATTATAGTTTAAT TCTTATTTTTGATCAGAAGT
Downstream 100 bases:
>100_bases GAAAGCAGCTTTGATAATTTTGACTATGATTTTTCTGGAAATAGCGACCACCCAATTCCTAATTAAAAAGCATTTTTAAC TTGACAAATTTAGATTTCAT
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 176; Mature: 176
Protein sequence:
>176_residues MKIKALAHTIQLCPQRLLSRSVLVVTLSTLGLMINITPRWFNLSLDSIFTTAVYAQELLTDQAITPEEINKYAFSVLKIE NLRIEVYREIKNEFQKRSPGGSVPPIICNEKSSVNALPKNIQVIAMSYCKQAKKIIEGNDLTVSRFNEITQIQRKDKTWR EKIQAELIRIQQQTGN
Sequences:
>Translated_176_residues MKIKALAHTIQLCPQRLLSRSVLVVTLSTLGLMINITPRWFNLSLDSIFTTAVYAQELLTDQAITPEEINKYAFSVLKIE NLRIEVYREIKNEFQKRSPGGSVPPIICNEKSSVNALPKNIQVIAMSYCKQAKKIIEGNDLTVSRFNEITQIQRKDKTWR EKIQAELIRIQQQTGN >Mature_176_residues MKIKALAHTIQLCPQRLLSRSVLVVTLSTLGLMINITPRWFNLSLDSIFTTAVYAQELLTDQAITPEEINKYAFSVLKIE NLRIEVYREIKNEFQKRSPGGSVPPIICNEKSSVNALPKNIQVIAMSYCKQAKKIIEGNDLTVSRFNEITQIQRKDKTWR EKIQAELIRIQQQTGN
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 20132; Mature: 20132
Theoretical pI: Translated: 10.06; Mature: 10.06
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.7 %Cys (Translated Protein) 1.7 %Met (Translated Protein) 3.4 %Cys+Met (Translated Protein) 1.7 %Cys (Mature Protein) 1.7 %Met (Mature Protein) 3.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKIKALAHTIQLCPQRLLSRSVLVVTLSTLGLMINITPRWFNLSLDSIFTTAVYAQELLT CCHHHHHHHHHHHHHHHHCCHHHHHHHHHHCEEEECCCCCEECCHHHHHHHHHHHHHHHH DQAITPEEINKYAFSVLKIENLRIEVYREIKNEFQKRSPGGSVPPIICNEKSSVNALPKN CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEECCCCCCCCCCCH IQVIAMSYCKQAKKIIEGNDLTVSRFNEITQIQRKDKTWREKIQAELIRIQQQTGN HHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC >Mature Secondary Structure MKIKALAHTIQLCPQRLLSRSVLVVTLSTLGLMINITPRWFNLSLDSIFTTAVYAQELLT CCHHHHHHHHHHHHHHHHCCHHHHHHHHHHCEEEECCCCCEECCHHHHHHHHHHHHHHHH DQAITPEEINKYAFSVLKIENLRIEVYREIKNEFQKRSPGGSVPPIICNEKSSVNALPKN CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEECCCCCCCCCCCH IQVIAMSYCKQAKKIIEGNDLTVSRFNEITQIQRKDKTWREKIQAELIRIQQQTGN HHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA