| Definition | Trichodesmium erythraeum IMS101 chromosome, complete genome. |
|---|---|
| Accession | NC_008312 |
| Length | 7,750,108 |
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The map label for this gene is 113474032
Identifier: 113474032
GI number: 113474032
Start: 178603
End: 180135
Strand: Reverse
Name: 113474032
Synonym: Tery_0124
Alternate gene names: NA
Gene position: 180135-178603 (Counterclockwise)
Preceding gene: 113474033
Following gene: 113474031
Centisome position: 2.32
GC content: 37.9
Gene sequence:
>1533_bases ATGTCGACTCAACAGTTTAAAAACAAAATATCTCCCACCTTAGAGAAAAACCCGATCTTAATTAATAATTGTCATTTAAC TTCACACACAGAAAATAACTCCCAAACTTTTCTCGTTTCTCAAAACTCTAATTCTAGTCAACAATGTGCTTCCATTGACC CTTTTAGTCAAGCAATTAGGTTTGCTACAAAAGCCGCAAACTTAGCTCAATATGCAAGAACCAAACAACAATGGGATAGA GTAGCACAAGAGTGGGTGCAAGCAGTAGCTTGGATGCAAGCAGTGCCCCCAGAAAACCCTAGACGTGTTTTTGCTGAGAA AAAAGTTGCTGAGTATATGAGAAACCTAGCTTATTCTCAACAACAAGCGGCTTCTGCTCCCTCTAAATTTAACCCTGTTT CTTTCAATAGTAATATTCTTGATATCCAGTTAAAACTTTATTTATCTTACATTGCCACTATCGGTGTACCAGATGTTTTA ATTGTTGGGAGTTCCCGTGCTTTACATGGGGTCGCCCCCCAACAACTACAACAATATTTAATGGCTAAAGGTTATCCTCG GTTAAATATATTTAATTTTGGTATTAATGGGGCTACAGCTCAAGTAGTTGACTTTCAACTCCGACAACTTTTAAGCACTA ACCAACTGCCAAAATTAATTATCTGGGCTGATGGAGTACGAGCTTTTAATAGTGGGCGAGTGGATCGAACTTATAATTCA ATTATTGCTTCTGAGGGTAGAAGACTATTGCTTTCTGGCATTCGTCCCGAGTTACCTCAAGCTCAATCTAATTTTGCTTC TACCTGTTATCAGTTTCCTCAACCCTATAACGTATTTTCACCCAGTACCAATTTTCCTTGGGATACATCGGTAGGGGAGA CAATAGAGGTTAAGGATAGCCATATTAAATTAGGTAATTATATAAAATATTTCTATGAACCCATTGAAGTTCCCCATAAC AGGTTTTCAAACCTTTATACTCCCGTTCCCAAATCAGTATTTTTGGAAAGGCCTATTAGGGAAAATTCCTCAAACTCAAC CTCTTATACCCAAAACTATACTCTACCTGTACAAACAGTAGCGATCGCCAATGCTGCTAATGCCATTAACGCTAATGGTT TTCTGGCAATAGATAGACAATTTAATCCTTCCTATTATTATCGACAACGACCTTATGTAGCAGGTCTTTACGATGGTGAC TATGCCAGTTTTTATCTTGGAGGTACTCAAGGAGCAGCTTTAAATTCCCTTGTTAACTTTACTAAATCTCGAAATATTCC TTTAGTATTTGTTAACTTACCTCTATCTGATAGTTATTTAGACTCTGTACGTTGGTCCGCTGAAAAAGAATTTGATTCGT GGATGCAACGTAAAGCGAGAGAAAATGGCTTTAGGTTTCTGAACTTTAATTTATATCAGCCTCAACTAGCCAAAAATGAA TACTTCTTTGATCCCAGTCATTTAAACCGTTATGGTGCTGGTGCTGTAGCTCGTTATCTTGCTGTCAGTGCTGAAATTGC TTGGCCACGTTGA
Upstream 100 bases:
>100_bases AAGATAGAAAATAAAACTAACAGTAGTAGATGGAATTCTAATTAATTTGCTTCAACGTTTTACAGTAACCATAACTTTGC TCACCCTAACTGTTGGATGT
Downstream 100 bases:
>100_bases ATAAATCATAACTCACCGTTAGTCTATATATCAAACCTAAAATTGTATATATCGTCCCAAACTCAGCCTGAATAGCAGTT AGATGAACTTCAAATTATGT
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 510; Mature: 509
Protein sequence:
>510_residues MSTQQFKNKISPTLEKNPILINNCHLTSHTENNSQTFLVSQNSNSSQQCASIDPFSQAIRFATKAANLAQYARTKQQWDR VAQEWVQAVAWMQAVPPENPRRVFAEKKVAEYMRNLAYSQQQAASAPSKFNPVSFNSNILDIQLKLYLSYIATIGVPDVL IVGSSRALHGVAPQQLQQYLMAKGYPRLNIFNFGINGATAQVVDFQLRQLLSTNQLPKLIIWADGVRAFNSGRVDRTYNS IIASEGRRLLLSGIRPELPQAQSNFASTCYQFPQPYNVFSPSTNFPWDTSVGETIEVKDSHIKLGNYIKYFYEPIEVPHN RFSNLYTPVPKSVFLERPIRENSSNSTSYTQNYTLPVQTVAIANAANAINANGFLAIDRQFNPSYYYRQRPYVAGLYDGD YASFYLGGTQGAALNSLVNFTKSRNIPLVFVNLPLSDSYLDSVRWSAEKEFDSWMQRKARENGFRFLNFNLYQPQLAKNE YFFDPSHLNRYGAGAVARYLAVSAEIAWPR
Sequences:
>Translated_510_residues MSTQQFKNKISPTLEKNPILINNCHLTSHTENNSQTFLVSQNSNSSQQCASIDPFSQAIRFATKAANLAQYARTKQQWDR VAQEWVQAVAWMQAVPPENPRRVFAEKKVAEYMRNLAYSQQQAASAPSKFNPVSFNSNILDIQLKLYLSYIATIGVPDVL IVGSSRALHGVAPQQLQQYLMAKGYPRLNIFNFGINGATAQVVDFQLRQLLSTNQLPKLIIWADGVRAFNSGRVDRTYNS IIASEGRRLLLSGIRPELPQAQSNFASTCYQFPQPYNVFSPSTNFPWDTSVGETIEVKDSHIKLGNYIKYFYEPIEVPHN RFSNLYTPVPKSVFLERPIRENSSNSTSYTQNYTLPVQTVAIANAANAINANGFLAIDRQFNPSYYYRQRPYVAGLYDGD YASFYLGGTQGAALNSLVNFTKSRNIPLVFVNLPLSDSYLDSVRWSAEKEFDSWMQRKARENGFRFLNFNLYQPQLAKNE YFFDPSHLNRYGAGAVARYLAVSAEIAWPR >Mature_509_residues STQQFKNKISPTLEKNPILINNCHLTSHTENNSQTFLVSQNSNSSQQCASIDPFSQAIRFATKAANLAQYARTKQQWDRV AQEWVQAVAWMQAVPPENPRRVFAEKKVAEYMRNLAYSQQQAASAPSKFNPVSFNSNILDIQLKLYLSYIATIGVPDVLI VGSSRALHGVAPQQLQQYLMAKGYPRLNIFNFGINGATAQVVDFQLRQLLSTNQLPKLIIWADGVRAFNSGRVDRTYNSI IASEGRRLLLSGIRPELPQAQSNFASTCYQFPQPYNVFSPSTNFPWDTSVGETIEVKDSHIKLGNYIKYFYEPIEVPHNR FSNLYTPVPKSVFLERPIRENSSNSTSYTQNYTLPVQTVAIANAANAINANGFLAIDRQFNPSYYYRQRPYVAGLYDGDY ASFYLGGTQGAALNSLVNFTKSRNIPLVFVNLPLSDSYLDSVRWSAEKEFDSWMQRKARENGFRFLNFNLYQPQLAKNEY FFDPSHLNRYGAGAVARYLAVSAEIAWPR
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 57772; Mature: 57640
Theoretical pI: Translated: 9.69; Mature: 9.69
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.6 %Cys (Translated Protein) 1.0 %Met (Translated Protein) 1.6 %Cys+Met (Translated Protein) 0.6 %Cys (Mature Protein) 0.8 %Met (Mature Protein) 1.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSTQQFKNKISPTLEKNPILINNCHLTSHTENNSQTFLVSQNSNSSQQCASIDPFSQAIR CCHHHHHHHCCCCCCCCCEEEEEEEEECCCCCCCEEEEEECCCCCCCHHCCCCHHHHHHH FATKAANLAQYARTKQQWDRVAQEWVQAVAWMQAVPPENPRRVFAEKKVAEYMRNLAYSQ HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHH QQAASAPSKFNPVSFNSNILDIQLKLYLSYIATIGVPDVLIVGSSRALHGVAPQQLQQYL HHHHCCCCCCCCCCCCCCEEEEEHHHHHHHHHHCCCCCEEEECCCCCCCCCCHHHHHHHH MAKGYPRLNIFNFGINGATAQVVDFQLRQLLSTNQLPKLIIWADGVRAFNSGRVDRTYNS HHCCCCCEEEEEECCCCCHHHHHHHHHHHHHCCCCCCEEEEEECCHHHHCCCCCHHHHHH IIASEGRRLLLSGIRPELPQAQSNFASTCYQFPQPYNVFSPSTNFPWDTSVGETIEVKDS HHHHCCCEEEHHCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCEEEEECC HIKLGNYIKYFYEPIEVPHNRFSNLYTPVPKSVFLERPIRENSSNSTSYTQNYTLPVQTV EEEHHHHHHHHHHHHCCCHHHHHCCCCCCCHHHHHCCCCCCCCCCCCCEEEEECCCEEEE AIANAANAINANGFLAIDRQFNPSYYYRQRPYVAGLYDGDYASFYLGGTQGAALNSLVNF EECCCCCCCCCCCEEEEECCCCCCEEEECCCEEEEEECCCEEEEEECCCCCHHHHHHHHH TKSRNIPLVFVNLPLSDSYLDSVRWSAEKEFDSWMQRKARENGFRFLNFNLYQPQLAKNE HHCCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCC YFFDPSHLNRYGAGAVARYLAVSAEIAWPR CEECHHHHHHHCHHHHHHHHHHHCCCCCCC >Mature Secondary Structure STQQFKNKISPTLEKNPILINNCHLTSHTENNSQTFLVSQNSNSSQQCASIDPFSQAIR CHHHHHHHCCCCCCCCCEEEEEEEEECCCCCCCEEEEEECCCCCCCHHCCCCHHHHHHH FATKAANLAQYARTKQQWDRVAQEWVQAVAWMQAVPPENPRRVFAEKKVAEYMRNLAYSQ HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHH QQAASAPSKFNPVSFNSNILDIQLKLYLSYIATIGVPDVLIVGSSRALHGVAPQQLQQYL HHHHCCCCCCCCCCCCCCEEEEEHHHHHHHHHHCCCCCEEEECCCCCCCCCCHHHHHHHH MAKGYPRLNIFNFGINGATAQVVDFQLRQLLSTNQLPKLIIWADGVRAFNSGRVDRTYNS HHCCCCCEEEEEECCCCCHHHHHHHHHHHHHCCCCCCEEEEEECCHHHHCCCCCHHHHHH IIASEGRRLLLSGIRPELPQAQSNFASTCYQFPQPYNVFSPSTNFPWDTSVGETIEVKDS HHHHCCCEEEHHCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCEEEEECC HIKLGNYIKYFYEPIEVPHNRFSNLYTPVPKSVFLERPIRENSSNSTSYTQNYTLPVQTV EEEHHHHHHHHHHHHCCCHHHHHCCCCCCCHHHHHCCCCCCCCCCCCCEEEEECCCEEEE AIANAANAINANGFLAIDRQFNPSYYYRQRPYVAGLYDGDYASFYLGGTQGAALNSLVNF EECCCCCCCCCCCEEEEECCCCCCEEEECCCEEEEEECCCEEEEEECCCCCHHHHHHHHH TKSRNIPLVFVNLPLSDSYLDSVRWSAEKEFDSWMQRKARENGFRFLNFNLYQPQLAKNE HHCCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCC YFFDPSHLNRYGAGAVARYLAVSAEIAWPR CEECHHHHHHHCHHHHHHHHHHHCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA