| Definition | Trichodesmium erythraeum IMS101 chromosome, complete genome. |
|---|---|
| Accession | NC_008312 |
| Length | 7,750,108 |
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The map label for this gene is 113474008
Identifier: 113474008
GI number: 113474008
Start: 125895
End: 127244
Strand: Direct
Name: 113474008
Synonym: Tery_0090
Alternate gene names: NA
Gene position: 125895-127244 (Clockwise)
Preceding gene: 113474007
Following gene: 113474009
Centisome position: 1.62
GC content: 34.07
Gene sequence:
>1350_bases ATGAACAGTATAAAATCTACTACTCCACCAAAACTTGATAGTTGTCATGCTGACCTTGATTTTCGCCAATATATCCTTGA ATATTTTAAGAATGCTTGGGAAATTGAAGATCTTTTAATGCATAGTTTAGTGGGAGAAGAAACGTTTTATTCAAAACCCG ATCCTTTGAGAAATCCTCTAATTTTTTATCTCGGACATACGGCGGTTTTTTACATCAATAAATTAGTTTTCGTGGGATTA TTAGAAAAGCCTATCAACTTTAACTATGAAAGATTATTTGAGTTAGGAGTAGATCCAAAAAAATCAGAAGAGTTAGATCA GGCGATCGCTCACATTAACTGGCCTCAACTTGAAGATGTTTGGCAGTATCGAAAAAAAGTCTATCAAAGCGTTATAAGCC TAATTGAGAAAACCCCTTTAAATCTACCCATCCATCAAGATCATCCTCTTTGGGCATTGATGATGGGTATTGAGCATCAA CGTATTCATATTGAGACTTCTTCAATGTTGTTTCGGCAACTACCGACTGAAAAACTAAGACGTCCTAGTAATTGGCAATA TGCTCCTACTAATGGTGAGGTGGTTGAGAATGAGATGATAGAAGTTTCTGGTGGAGTAGTTAAACTGGGTAAGCCAGAAG ATGATCCTACTTATGGTTGGGATATTGAATACGGCGATCGCCAAGTTAAAGTTGCACCTTTTGTTGCTAGTAAATATTTA ATTACTAATGCAGAATTTTTAGAATTTGTCAAGGGTGGTGGTTACGAAAATCAAGATTATTGGACTCAAGAATCTTGGCA TTGGAAAAATGAAAATAATATCAAACATCCAAAATTTTGGATACCTGAAAATGGTACATCTATATATAGATATCGAGCCA TGTTTGATGCAATTAATTTACCTTTAAATTGGCCTGTGGAAGTCAATCATTATGAAGCAATGGCTTATTGTAGTTGGAGA GGTAAAAATACTAGGTTAATGAGTGAAGCAGAATATAATTTAGCAACTTATGGTAATGGTAGAAAAGTAGAGGTAGATAA TTACAATTTGAATTTAAAATTTGGTTCTCCAACTCCAGTTGGTTTATTAGAAACTGCAAAAAATGAATCAGGATTATATG ATTTACGGGGTAATGTTTGGGAATGGTTAAGTGATAATTTGAATCCTCTTTCAGGATATAAAACTCATCAACTATATGAA AATTATTCTGCTCCGTTTTTTAATAGTAGACATAATATGATGTTAGGAGGATGTTGGATAACTAGCGGTACAGAAGCTTT CAGATATTATCGTAATTGGTTCCGACCTAACTTTTATCAGCATGTTGGTTTTAGAATAGTTCAGGGATAG
Upstream 100 bases:
>100_bases AATGAATCTATAAATTCCATGAAATAGTATAATTATCTGGAATTTAAATATCTTAAATTGCAAAATTTAGAGATTAAATT TTTTTCTATTTATAACAATT
Downstream 100 bases:
>100_bases AAAGATGTATAGCGTTTCTCAGACTAACGAGGTAGACCTATCTTTACAGAAGTGTTGAATGTTTTAATGTTGAACTGTAT CTCACTATCTTGAAAAGTGC
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 449; Mature: 449
Protein sequence:
>449_residues MNSIKSTTPPKLDSCHADLDFRQYILEYFKNAWEIEDLLMHSLVGEETFYSKPDPLRNPLIFYLGHTAVFYINKLVFVGL LEKPINFNYERLFELGVDPKKSEELDQAIAHINWPQLEDVWQYRKKVYQSVISLIEKTPLNLPIHQDHPLWALMMGIEHQ RIHIETSSMLFRQLPTEKLRRPSNWQYAPTNGEVVENEMIEVSGGVVKLGKPEDDPTYGWDIEYGDRQVKVAPFVASKYL ITNAEFLEFVKGGGYENQDYWTQESWHWKNENNIKHPKFWIPENGTSIYRYRAMFDAINLPLNWPVEVNHYEAMAYCSWR GKNTRLMSEAEYNLATYGNGRKVEVDNYNLNLKFGSPTPVGLLETAKNESGLYDLRGNVWEWLSDNLNPLSGYKTHQLYE NYSAPFFNSRHNMMLGGCWITSGTEAFRYYRNWFRPNFYQHVGFRIVQG
Sequences:
>Translated_449_residues MNSIKSTTPPKLDSCHADLDFRQYILEYFKNAWEIEDLLMHSLVGEETFYSKPDPLRNPLIFYLGHTAVFYINKLVFVGL LEKPINFNYERLFELGVDPKKSEELDQAIAHINWPQLEDVWQYRKKVYQSVISLIEKTPLNLPIHQDHPLWALMMGIEHQ RIHIETSSMLFRQLPTEKLRRPSNWQYAPTNGEVVENEMIEVSGGVVKLGKPEDDPTYGWDIEYGDRQVKVAPFVASKYL ITNAEFLEFVKGGGYENQDYWTQESWHWKNENNIKHPKFWIPENGTSIYRYRAMFDAINLPLNWPVEVNHYEAMAYCSWR GKNTRLMSEAEYNLATYGNGRKVEVDNYNLNLKFGSPTPVGLLETAKNESGLYDLRGNVWEWLSDNLNPLSGYKTHQLYE NYSAPFFNSRHNMMLGGCWITSGTEAFRYYRNWFRPNFYQHVGFRIVQG >Mature_449_residues MNSIKSTTPPKLDSCHADLDFRQYILEYFKNAWEIEDLLMHSLVGEETFYSKPDPLRNPLIFYLGHTAVFYINKLVFVGL LEKPINFNYERLFELGVDPKKSEELDQAIAHINWPQLEDVWQYRKKVYQSVISLIEKTPLNLPIHQDHPLWALMMGIEHQ RIHIETSSMLFRQLPTEKLRRPSNWQYAPTNGEVVENEMIEVSGGVVKLGKPEDDPTYGWDIEYGDRQVKVAPFVASKYL ITNAEFLEFVKGGGYENQDYWTQESWHWKNENNIKHPKFWIPENGTSIYRYRAMFDAINLPLNWPVEVNHYEAMAYCSWR GKNTRLMSEAEYNLATYGNGRKVEVDNYNLNLKFGSPTPVGLLETAKNESGLYDLRGNVWEWLSDNLNPLSGYKTHQLYE NYSAPFFNSRHNMMLGGCWITSGTEAFRYYRNWFRPNFYQHVGFRIVQG
Specific function: Unknown
COG id: COG1262
COG function: function code S; Uncharacterized conserved protein
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 52740; Mature: 52740
Theoretical pI: Translated: 6.16; Mature: 6.16
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.7 %Cys (Translated Protein) 2.4 %Met (Translated Protein) 3.1 %Cys+Met (Translated Protein) 0.7 %Cys (Mature Protein) 2.4 %Met (Mature Protein) 3.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNSIKSTTPPKLDSCHADLDFRQYILEYFKNAWEIEDLLMHSLVGEETFYSKPDPLRNPL CCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCHHHHHHHHHHHHCCHHCCCCCCCCCCCE IFYLGHTAVFYINKLVFVGLLEKPINFNYERLFELGVDPKKSEELDQAIAHINWPQLEDV EEEEHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHCCCCCCHHHHHHHHHHCCCCCHHHH WQYRKKVYQSVISLIEKTPLNLPIHQDHPLWALMMGIEHQRIHIETSSMLFRQLPTEKLR HHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEECCCCEEEEEEHHHHHHHHCCHHHHC RPSNWQYAPTNGEVVENEMIEVSGGVVKLGKPEDDPTYGWDIEYGDRQVKVAPFVASKYL CCCCCCCCCCCCCEECCCEEEECCCEEECCCCCCCCCCCCEEEECCCEEEEECEEECHHE ITNAEFLEFVKGGGYENQDYWTQESWHWKNENNIKHPKFWIPENGTSIYRYRAMFDAINL ECCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCEEEEHHHHHHHHCC PLNWPVEVNHYEAMAYCSWRGKNTRLMSEAEYNLATYGNGRKVEVDNYNLNLKFGSPTPV CCCCCEEECCEEEEEEEEECCCCCEEECCCCCCEEECCCCCEEEECCEEEEEEECCCCCC GLLETAKNESGLYDLRGNVWEWLSDNLNPLSGYKTHQLYENYSAPFFNSRHNMMLGGCWI HHHHHCCCCCCEEECCCCHHHHHCCCCCCCCCCHHHHHHHCCCCCCCCCCCCEEEEEEEE TSGTEAFRYYRNWFRPNFYQHVGFRIVQG CCCHHHHHHHHHHCCCCHHHHCCEEEECC >Mature Secondary Structure MNSIKSTTPPKLDSCHADLDFRQYILEYFKNAWEIEDLLMHSLVGEETFYSKPDPLRNPL CCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCHHHHHHHHHHHHCCHHCCCCCCCCCCCE IFYLGHTAVFYINKLVFVGLLEKPINFNYERLFELGVDPKKSEELDQAIAHINWPQLEDV EEEEHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHCCCCCCHHHHHHHHHHCCCCCHHHH WQYRKKVYQSVISLIEKTPLNLPIHQDHPLWALMMGIEHQRIHIETSSMLFRQLPTEKLR HHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEECCCCEEEEEEHHHHHHHHCCHHHHC RPSNWQYAPTNGEVVENEMIEVSGGVVKLGKPEDDPTYGWDIEYGDRQVKVAPFVASKYL CCCCCCCCCCCCCEECCCEEEECCCEEECCCCCCCCCCCCEEEECCCEEEEECEEECHHE ITNAEFLEFVKGGGYENQDYWTQESWHWKNENNIKHPKFWIPENGTSIYRYRAMFDAINL ECCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCEEEEHHHHHHHHCC PLNWPVEVNHYEAMAYCSWRGKNTRLMSEAEYNLATYGNGRKVEVDNYNLNLKFGSPTPV CCCCCEEECCEEEEEEEEECCCCCEEECCCCCCEEECCCCCEEEECCEEEEEEECCCCCC GLLETAKNESGLYDLRGNVWEWLSDNLNPLSGYKTHQLYENYSAPFFNSRHNMMLGGCWI HHHHHCCCCCCEEECCCCHHHHHCCCCCCCCCCHHHHHHHCCCCCCCCCCCCEEEEEEEE TSGTEAFRYYRNWFRPNFYQHVGFRIVQG CCCHHHHHHHHHHCCCCHHHHCCEEEECC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA