Click here to switch to the map view.

The map label for this gene is atpH

Identifier: 110835590

GI number: 110835590

Start: 3087180

End: 3087716

Strand: Reverse

Name: atpH

Synonym: ABO_2729

Alternate gene names: 110835590

Gene position: 3087716-3087180 (Counterclockwise)

Preceding gene: 110835591

Following gene: 110835589

Centisome position: 98.96

GC content: 55.49

Gene sequence:

>537_bases
ATGGCTGAACTGACCACCATCGCACGCCCCTACGCCAAGGCCGCATTTGTGTTCGCTAAAGAACACGATGCCCTGGAGCA
GTGGGAGAAGATGCTGGGCCTGGCAGCAGCAGTGGCAGGTGATGCCTCCATGCGTGCCTACCTTGACCAGCCGGAACTGG
ATGACGCCACCAAGGTTTCTGCTTTTGCAGAAGTCTGTGGTGATGAGCTGGACGAAAGCGGTCGCAACTTTGTTGCGCAG
CTAACGCAGAATAAGCGTTTGCCGCTTTTGCCGATCATCCTGCAACTGTTCCACGAGCTTCTGGCCGAACAGCAGCAGTT
CACCGATGTGGAGATGATCTCTGCATTCGAGTTGGACGATGCTGCTACCGACAAGTTGGTAGCAGCGCTTAAGAAACGCC
TTGGTACGGAAGTGAATGTCACAACTTCCGTCGACCAATCTTTGATTGGGGGCGTGCTGGTGCGAGCCGGCGATACCGTA
ATTGATGGCAGTGTGCGCGGCCGGCTTAATCGCTTGGCAGAGCAACTGAACTCTTGA

Upstream 100 bases:

>100_bases
GAGCGGTGCCGAAAAGGTACTGGGCGGCGAAGTAAACCAGGACAAACACACGCAGTTGCTTGAGCAGCTGGCGGCTGAAC
TCTGAGAATACGGGTAACCC

Downstream 100 bases:

>100_bases
GTTTGAGGGATTAGAGATGCAGCAACTCAACCCGTCCGAAATCAGCGAGATTATCAAGTCGCGCATTGCGAAACTTGATA
CCTCCACCGAAGCACGCAAC

Product: ATP synthase subunit delta

Products: ADP; phosphate; H+

Alternate protein names: ATP synthase F(1) sector subunit delta; F-type ATPase subunit delta; F-ATPase subunit delta

Number of amino acids: Translated: 178; Mature: 177

Protein sequence:

>178_residues
MAELTTIARPYAKAAFVFAKEHDALEQWEKMLGLAAAVAGDASMRAYLDQPELDDATKVSAFAEVCGDELDESGRNFVAQ
LTQNKRLPLLPIILQLFHELLAEQQQFTDVEMISAFELDDAATDKLVAALKKRLGTEVNVTTSVDQSLIGGVLVRAGDTV
IDGSVRGRLNRLAEQLNS

Sequences:

>Translated_178_residues
MAELTTIARPYAKAAFVFAKEHDALEQWEKMLGLAAAVAGDASMRAYLDQPELDDATKVSAFAEVCGDELDESGRNFVAQ
LTQNKRLPLLPIILQLFHELLAEQQQFTDVEMISAFELDDAATDKLVAALKKRLGTEVNVTTSVDQSLIGGVLVRAGDTV
IDGSVRGRLNRLAEQLNS
>Mature_177_residues
AELTTIARPYAKAAFVFAKEHDALEQWEKMLGLAAAVAGDASMRAYLDQPELDDATKVSAFAEVCGDELDESGRNFVAQL
TQNKRLPLLPIILQLFHELLAEQQQFTDVEMISAFELDDAATDKLVAALKKRLGTEVNVTTSVDQSLIGGVLVRAGDTVI
DGSVRGRLNRLAEQLNS

Specific function: This protein is part of the stalk that links CF(0) to CF(1). It either transmits conformational changes from CF(0) to CF(1) or is implicated in proton conduction

COG id: COG0712

COG function: function code C; F0F1-type ATP synthase, delta subunit (mitochondrial oligomycin sensitivity protein)

Gene ontology:

Cell location: Cell inner membrane; Peripheral membrane protein

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ATPase delta chain family

Homologues:

Organism=Escherichia coli, GI1790173, Length=178, Percent_Identity=45.5056179775281, Blast_Score=152, Evalue=1e-38,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): ATPD_ALCBS (Q0VKX1)

Other databases:

- EMBL:   AM286690
- RefSeq:   YP_694449.1
- ProteinModelPortal:   Q0VKX1
- SMR:   Q0VKX1
- STRING:   Q0VKX1
- GeneID:   4212127
- GenomeReviews:   AM286690_GR
- KEGG:   abo:ABO_2729
- NMPDR:   fig|393595.12.peg.2738
- eggNOG:   COG0712
- HOGENOM:   HBG668108
- OMA:   FIAICGE
- PhylomeDB:   Q0VKX1
- BioCyc:   ABOR393595:ABO_2729-MONOMER
- HAMAP:   MF_01416
- InterPro:   IPR000711
- InterPro:   IPR020781
- Gene3D:   G3DSA:1.10.520.20
- PANTHER:   PTHR11910
- PRINTS:   PR00125
- TIGRFAMs:   TIGR01145

Pfam domain/function: PF00213 OSCP; SSF47928 ATPsynt_OSCP

EC number: 3.6.3.14

Molecular weight: Translated: 19391; Mature: 19260

Theoretical pI: Translated: 4.34; Mature: 4.34

Prosite motif: PS00389 ATPASE_DELTA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAELTTIARPYAKAAFVFAKEHDALEQWEKMLGLAAAVAGDASMRAYLDQPELDDATKVS
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHCCCCCCCCHHHHH
AFAEVCGDELDESGRNFVAQLTQNKRLPLLPIILQLFHELLAEQQQFTDVEMISAFELDD
HHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHCCCH
AATDKLVAALKKRLGTEVNVTTSVDQSLIGGVLVRAGDTVIDGSVRGRLNRLAEQLNS
HHHHHHHHHHHHHHCCCCEEEHHHHHHHHHHHHHHCCCEEECCHHHHHHHHHHHHHCC
>Mature Secondary Structure 
AELTTIARPYAKAAFVFAKEHDALEQWEKMLGLAAAVAGDASMRAYLDQPELDDATKVS
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHCCCCCCCCHHHHH
AFAEVCGDELDESGRNFVAQLTQNKRLPLLPIILQLFHELLAEQQQFTDVEMISAFELDD
HHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHCCCH
AATDKLVAALKKRLGTEVNVTTSVDQSLIGGVLVRAGDTVIDGSVRGRLNRLAEQLNS
HHHHHHHHHHHHHHCCCCEEEHHHHHHHHHHHHHHCCCEEECCHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: Borate; diphosphate; HCO3- [C]

Metal ions: Co2+; Fe2+; Mn2+; Zn2+ [C]

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: ATP; H2O; H+

Specific reaction: ATP + H2O + H+(in) = ADP + phosphate + H+(out)

General reaction: Phosphorous acid anhydride hydrolysis [C]

Inhibitor: Ca2+; CN-; Efrapeptin; Ethidiumbromide; Guanidines analogs; Oligomycin; Quercetin; Trialkyl tin derivatives; Venturicidin [C]

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA