| Definition | Alcanivorax borkumensis SK2 chromosome, complete genome. |
|---|---|
| Accession | NC_008260 |
| Length | 3,120,143 |
Click here to switch to the map view.
The map label for this gene is 110835470
Identifier: 110835470
GI number: 110835470
Start: 2952826
End: 2953470
Strand: Direct
Name: 110835470
Synonym: ABO_2609
Alternate gene names: NA
Gene position: 2952826-2953470 (Clockwise)
Preceding gene: 110835467
Following gene: 110835472
Centisome position: 94.64
GC content: 52.71
Gene sequence:
>645_bases ATGCATCTAACCGCAGATACACTCAACGATCTACCGCGCGGTCAACGAATCAACCTTGTTAACAGCTTATCCGGCTTCAA AAGCGCCAATCTTGTCGGCACCTGCTCAGACGGTGGAGAGGAAAACCTGGCCATGGTCGGCTCTTGTTTCCACCTCGGTG CCGACCCTGCCCTGATGGGGATGATCATGCGTCCTCATTCAGTTGATAGACACAGTCTCGAGTACCTAGCGGCGACTGGA GTTTATACTCTGAACCAAGTGCATGAGGATATCCTAAAGGCGGCACATCAGACCTCTGCTCGCTACCCCCGTGAGATTTC CGAATTTACTGCCACCGGGTTGACGCCATCTTACCTACCAGCTTTCCAGGCACCCTTCGTGGAAGAGGCGCGGATTAAAT TGGGAATGGTGGTGATCGAAACTCAAACGTTAGCCGTTAACGATACCGTTTTGGTGATCGGCGCCATTGAGCATATTTTA CTTCCAGACAATGCCGTAGAGAACGATGGCTTTGTAAATATTGAACGGGCAGGCACGGTGGCTTTATCCGGGCTCGATAG CTACCACCGCAGCCAATCCATCGGGCGGCTCAGCTATGCCAAACCAGACAAACCCACGCACTGGCTACACGACAACGCGA CATGA
Upstream 100 bases:
>100_bases AATCTGATCGCGATCGAAAGGATTAGCCATAACCGGTAACGGGCCTCCACGGTTTGCTCACGGCAGGCACTGATAATACG GGCCTAGGAGGAATCACACC
Downstream 100 bases:
>100_bases TTACGGAACCGGTGAGGGCTGCGTCAGTGCCACCCAGGCCCACCAGCCGGTCAACACCAGCATGGGCAGCGATATCAACA ACCCCCACATTACTAAGCGG
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 214; Mature: 214
Protein sequence:
>214_residues MHLTADTLNDLPRGQRINLVNSLSGFKSANLVGTCSDGGEENLAMVGSCFHLGADPALMGMIMRPHSVDRHSLEYLAATG VYTLNQVHEDILKAAHQTSARYPREISEFTATGLTPSYLPAFQAPFVEEARIKLGMVVIETQTLAVNDTVLVIGAIEHIL LPDNAVENDGFVNIERAGTVALSGLDSYHRSQSIGRLSYAKPDKPTHWLHDNAT
Sequences:
>Translated_214_residues MHLTADTLNDLPRGQRINLVNSLSGFKSANLVGTCSDGGEENLAMVGSCFHLGADPALMGMIMRPHSVDRHSLEYLAATG VYTLNQVHEDILKAAHQTSARYPREISEFTATGLTPSYLPAFQAPFVEEARIKLGMVVIETQTLAVNDTVLVIGAIEHIL LPDNAVENDGFVNIERAGTVALSGLDSYHRSQSIGRLSYAKPDKPTHWLHDNAT >Mature_214_residues MHLTADTLNDLPRGQRINLVNSLSGFKSANLVGTCSDGGEENLAMVGSCFHLGADPALMGMIMRPHSVDRHSLEYLAATG VYTLNQVHEDILKAAHQTSARYPREISEFTATGLTPSYLPAFQAPFVEEARIKLGMVVIETQTLAVNDTVLVIGAIEHIL LPDNAVENDGFVNIERAGTVALSGLDSYHRSQSIGRLSYAKPDKPTHWLHDNAT
Specific function: Unknown
COG id: COG1853
COG function: function code R; Conserved protein/domain typically associated with flavoprotein oxygenases, DIM6/NTAB family
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 23236; Mature: 23236
Theoretical pI: Translated: 5.73; Mature: 5.73
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.9 %Cys (Translated Protein) 2.8 %Met (Translated Protein) 3.7 %Cys+Met (Translated Protein) 0.9 %Cys (Mature Protein) 2.8 %Met (Mature Protein) 3.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MHLTADTLNDLPRGQRINLVNSLSGFKSANLVGTCSDGGEENLAMVGSCFHLGADPALMG CCCCHHHHHHCCCCCEEHHHHHHCCCCCCCEEEECCCCCCCCHHHHHHHHHCCCCHHHHH MIMRPHSVDRHSLEYLAATGVYTLNQVHEDILKAAHQTSARYPREISEFTATGLTPSYLP HHCCCCCCCHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCHHHCC AFQAPFVEEARIKLGMVVIETQTLAVNDTVLVIGAIEHILLPDNAVENDGFVNIERAGTV HHCCCCHHHHHEEEEEEEEEEEEEEECCCEEEEECHHHEECCCCCCCCCCEEEEECCCEE ALSGLDSYHRSQSIGRLSYAKPDKPTHWLHDNAT EECCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCC >Mature Secondary Structure MHLTADTLNDLPRGQRINLVNSLSGFKSANLVGTCSDGGEENLAMVGSCFHLGADPALMG CCCCHHHHHHCCCCCEEHHHHHHCCCCCCCEEEECCCCCCCCHHHHHHHHHCCCCHHHHH MIMRPHSVDRHSLEYLAATGVYTLNQVHEDILKAAHQTSARYPREISEFTATGLTPSYLP HHCCCCCCCHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCHHHCC AFQAPFVEEARIKLGMVVIETQTLAVNDTVLVIGAIEHILLPDNAVENDGFVNIERAGTV HHCCCCHHHHHEEEEEEEEEEEEEEECCCEEEEECHHHEECCCCCCCCCCEEEEECCCEE ALSGLDSYHRSQSIGRLSYAKPDKPTHWLHDNAT EECCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA