Definition Alcanivorax borkumensis SK2 chromosome, complete genome.
Accession NC_008260
Length 3,120,143

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The map label for this gene is uidR [C]

Identifier: 110835442

GI number: 110835442

Start: 2921475

End: 2922242

Strand: Direct

Name: uidR [C]

Synonym: ABO_2581

Alternate gene names: 110835442

Gene position: 2921475-2922242 (Clockwise)

Preceding gene: 110835441

Following gene: 110835445

Centisome position: 93.63

GC content: 55.86

Gene sequence:

>768_bases
ATGACTATGACAAAAGCACGCAGCGGGCGCGAACAAGCGCTGGCAGAAAGAGAACAGCTTTTTATTGAAGCAACCCGGCA
ACAGCTGTGCGATAAAGGCCTGCTGGGGGTACAGATGGCGGCCATTGCCCGCAGCTGTAATTTTGCCACCGGCACGCTTT
ACCATCACTTCGCGTCCAAAGAAGATCTGCTCATTGCCGTCTGCACCGAGCTAACCACCACGCGACGGGCCTACTTCGAG
AAAGTTGCCCATTCCGACCTTTCCAACCGCGATAAAATGATGGGGTTTGCCGTAGCGTACTCACTGTTTGCTCAGCATTA
CCCCGAACATTTCCGGCTCGAACAATACATCATGACAGAAGTGGTCTGGTTGGCGTCGTCAGCTAGCCGCCGCGAACAGT
TCCTGGCCGCCACCCAGCCCATCGGCAGAATGGTAGAGCAGGTCGTTCGTGATGCCATTGCCAGCAACGAACTGGAAGAC
CACGGCCAAGATCCGCTCACGTTCAGCATCGGCCAGTGGTCCATGTCCATGGGCATGCATACCCTGATCCACGCCGACGG
CATCCTGGATATGTACGACCTTAAAGACCCACACCGTCTACTATTGCGTAACGTCCAGCTGCACCTCAGTGCCATGCAGT
GGCAGCCACTTGACGACCAGCCCTTTGACGACGCCGCACTAAACAGCAAAGTGGCTTACCTCTGCGACTACCTGTTCGCT
GACGTATGTAGGGAAAAAGGCAGCAGCCTGACACTTGGCAGCGCCTGA

Upstream 100 bases:

>100_bases
GCTGTGCTTTTATAAACAGCGCGCCTGCCTGTACGCTGAGAAAAGCGCTTGAACCCTATAGCAAGGCTATTCAAACTGAA
TGGTGGGATAACACAAGACA

Downstream 100 bases:

>100_bases
GCCCAAACAACAACGGGCCCATCAGCCACAAAAAAGCCCCGTGCTACGGGGCTTTTGCTTTAAGGCACTAGCTTAAGGCT
CTAGCATAGCCCAGGCCTTA

Product: AcrR transcription regulator family protein

Products: NA

Alternate protein names: Transcriptional Regulator TetR Family; Regulator AmrR; Transcriptional Regulator TetR Family Protein; AcrR Transcription Regulator Family Protein; TetR Family Transcriptional Regulator

Number of amino acids: Translated: 255; Mature: 254

Protein sequence:

>255_residues
MTMTKARSGREQALAEREQLFIEATRQQLCDKGLLGVQMAAIARSCNFATGTLYHHFASKEDLLIAVCTELTTTRRAYFE
KVAHSDLSNRDKMMGFAVAYSLFAQHYPEHFRLEQYIMTEVVWLASSASRREQFLAATQPIGRMVEQVVRDAIASNELED
HGQDPLTFSIGQWSMSMGMHTLIHADGILDMYDLKDPHRLLLRNVQLHLSAMQWQPLDDQPFDDAALNSKVAYLCDYLFA
DVCREKGSSLTLGSA

Sequences:

>Translated_255_residues
MTMTKARSGREQALAEREQLFIEATRQQLCDKGLLGVQMAAIARSCNFATGTLYHHFASKEDLLIAVCTELTTTRRAYFE
KVAHSDLSNRDKMMGFAVAYSLFAQHYPEHFRLEQYIMTEVVWLASSASRREQFLAATQPIGRMVEQVVRDAIASNELED
HGQDPLTFSIGQWSMSMGMHTLIHADGILDMYDLKDPHRLLLRNVQLHLSAMQWQPLDDQPFDDAALNSKVAYLCDYLFA
DVCREKGSSLTLGSA
>Mature_254_residues
TMTKARSGREQALAEREQLFIEATRQQLCDKGLLGVQMAAIARSCNFATGTLYHHFASKEDLLIAVCTELTTTRRAYFEK
VAHSDLSNRDKMMGFAVAYSLFAQHYPEHFRLEQYIMTEVVWLASSASRREQFLAATQPIGRMVEQVVRDAIASNELEDH
GQDPLTFSIGQWSMSMGMHTLIHADGILDMYDLKDPHRLLLRNVQLHLSAMQWQPLDDQPFDDAALNSKVAYLCDYLFAD
VCREKGSSLTLGSA

Specific function: Repressor For The Uidrabc (Gusrabc) Operon. [C]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 28844; Mature: 28713

Theoretical pI: Translated: 5.98; Mature: 5.98

Prosite motif: PS50977 HTH_TETR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.0 %Cys     (Translated Protein)
4.7 %Met     (Translated Protein)
6.7 %Cys+Met (Translated Protein)
2.0 %Cys     (Mature Protein)
4.3 %Met     (Mature Protein)
6.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure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HHHHHCCCCEECCCC
>Mature Secondary Structure 
TMTKARSGREQALAEREQLFIEATRQQLCDKGLLGVQMAAIARSCNFATGTLYHHFASK
CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCHHHHHHHHCCC
EDLLIAVCTELTTTRRAYFEKVAHSDLSNRDKMMGFAVAYSLFAQHYPEHFRLEQYIMTE
CCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH
VVWLASSASRREQFLAATQPIGRMVEQVVRDAIASNELEDHGQDPLTFSIGQWSMSMGMH
HHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHCCCCCEEEEHHHHHHHHHHH
TLIHADGILDMYDLKDPHRLLLRNVQLHLSAMQWQPLDDQPFDDAALNSKVAYLCDYLFA
HHHHHCCCEEHHCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHH
DVCREKGSSLTLGSA
HHHHHCCCCEECCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA