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The map label for this gene is ydhC [H]

Identifier: 110835369

GI number: 110835369

Start: 2844216

End: 2844938

Strand: Direct

Name: ydhC [H]

Synonym: ABO_2508

Alternate gene names: 110835369

Gene position: 2844216-2844938 (Clockwise)

Preceding gene: 110835368

Following gene: 110835370

Centisome position: 91.16

GC content: 51.18

Gene sequence:

>723_bases
ATGAATACGCGAGCGGGAAAAAAAACCGAACGTCTGGCTGAACAAATTTATCTGCAATTAAAGCAGGACATGTTTGATTT
TCGGCTAATGCCCGGCGACCGCTTCAGTGAAAACGAAGTGGCCGAACGGATGGGTGTATCACGCACCCCCGTGCGAGAAG
CCCTGTTCCGATTACAACGGGAAACCTTTGTAGATGTGCTCTATCGCAGCGGTTGGCAGGTCAAGCCCTTCGACTTCAAA
TATTTCGAAGAATTATACGACGTGCGCACCGTTCTCGAATGCGCCGCTGTACGCAAGCTATGCGAACACGGCGGTGAACT
AAGCAAACTGGATAATCTGGTTAGCCAATGGTGTGTAGAAAAGGCACAAAGATTATCCGATGGCCCTGTGGTCAGCGGCA
TGGATGAACATTTTCACGAACGACTGGTGGAAAGCACCGGCAACAATCAAATGGCACGCATTCATCATGATCTCACCGAG
CGGCTACGCATTATACGGCGCCTGGATTTCACCAGCCCCTCCCGAGTGGAGGCCACTTATAACGAACACCAGGCAGTGCT
GGAAGCCATCCTGCACCGCCAGGTGGAGCAAGCACAAATTCTGCTGTGTGCCCACATTGAAGAATCACGTAACGAAGTCA
GAAAAATCACCGTACACATGCTGCACGAGGCCAGCGTACGCGCTGAGTTACCCGCAAGCTCTATCAACAAGAGTGATGGT
TAA

Upstream 100 bases:

>100_bases
GGCAACGTTATTGTTCTGCATTGCCTGCCTGGAGCCATCATTAACGCCCGCGATCCAGTGATCGCCATCAACACCGCCGC
GATGGCCTGAGGAATCAAAG

Downstream 100 bases:

>100_bases
CGTATTAGAGGGAAACAACAAGCCAGTGAGCCAACAGGAGTAGGAAGGAGGGTTCACGGCAATACAAACGCCCATTTAAA
CGCGACTGAGAAGCAAGGAG

Product: GntR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 240; Mature: 240

Protein sequence:

>240_residues
MNTRAGKKTERLAEQIYLQLKQDMFDFRLMPGDRFSENEVAERMGVSRTPVREALFRLQRETFVDVLYRSGWQVKPFDFK
YFEELYDVRTVLECAAVRKLCEHGGELSKLDNLVSQWCVEKAQRLSDGPVVSGMDEHFHERLVESTGNNQMARIHHDLTE
RLRIIRRLDFTSPSRVEATYNEHQAVLEAILHRQVEQAQILLCAHIEESRNEVRKITVHMLHEASVRAELPASSINKSDG

Sequences:

>Translated_240_residues
MNTRAGKKTERLAEQIYLQLKQDMFDFRLMPGDRFSENEVAERMGVSRTPVREALFRLQRETFVDVLYRSGWQVKPFDFK
YFEELYDVRTVLECAAVRKLCEHGGELSKLDNLVSQWCVEKAQRLSDGPVVSGMDEHFHERLVESTGNNQMARIHHDLTE
RLRIIRRLDFTSPSRVEATYNEHQAVLEAILHRQVEQAQILLCAHIEESRNEVRKITVHMLHEASVRAELPASSINKSDG
>Mature_240_residues
MNTRAGKKTERLAEQIYLQLKQDMFDFRLMPGDRFSENEVAERMGVSRTPVREALFRLQRETFVDVLYRSGWQVKPFDFK
YFEELYDVRTVLECAAVRKLCEHGGELSKLDNLVSQWCVEKAQRLSDGPVVSGMDEHFHERLVESTGNNQMARIHHDLTE
RLRIIRRLDFTSPSRVEATYNEHQAVLEAILHRQVEQAQILLCAHIEESRNEVRKITVHMLHEASVRAELPASSINKSDG

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH gntR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1787821, Length=215, Percent_Identity=26.5116279069767, Blast_Score=62, Evalue=3e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011711
- InterPro:   IPR000485
- InterPro:   IPR000524
- InterPro:   IPR011991 [H]

Pfam domain/function: PF07729 FCD; PF00392 GntR [H]

EC number: NA

Molecular weight: Translated: 27924; Mature: 27924

Theoretical pI: Translated: 6.68; Mature: 6.68

Prosite motif: PS50949 HTH_GNTR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
4.6 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
4.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNTRAGKKTERLAEQIYLQLKQDMFDFRLMPGDRFSENEVAERMGVSRTPVREALFRLQR
CCCCCCHHHHHHHHHHHHHHHHHHHHEECCCCCCCCHHHHHHHHCCCCCHHHHHHHHHHH
ETFVDVLYRSGWQVKPFDFKYFEELYDVRTVLECAAVRKLCEHGGELSKLDNLVSQWCVE
HHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH
KAQRLSDGPVVSGMDEHFHERLVESTGNNQMARIHHDLTERLRIIRRLDFTSPSRVEATY
HHHHCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHH
NEHQAVLEAILHRQVEQAQILLCAHIEESRNEVRKITVHMLHEASVRAELPASSINKSDG
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHCCCCCCC
>Mature Secondary Structure
MNTRAGKKTERLAEQIYLQLKQDMFDFRLMPGDRFSENEVAERMGVSRTPVREALFRLQR
CCCCCCHHHHHHHHHHHHHHHHHHHHEECCCCCCCCHHHHHHHHCCCCCHHHHHHHHHHH
ETFVDVLYRSGWQVKPFDFKYFEELYDVRTVLECAAVRKLCEHGGELSKLDNLVSQWCVE
HHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH
KAQRLSDGPVVSGMDEHFHERLVESTGNNQMARIHHDLTERLRIIRRLDFTSPSRVEATY
HHHHCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHH
NEHQAVLEAILHRQVEQAQILLCAHIEESRNEVRKITVHMLHEASVRAELPASSINKSDG
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9202461; 9384377 [H]