| Definition | Alcanivorax borkumensis SK2 chromosome, complete genome. |
|---|---|
| Accession | NC_008260 |
| Length | 3,120,143 |
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The map label for this gene is 110835128
Identifier: 110835128
GI number: 110835128
Start: 2587546
End: 2589081
Strand: Reverse
Name: 110835128
Synonym: ABO_2267
Alternate gene names: NA
Gene position: 2589081-2587546 (Counterclockwise)
Preceding gene: 110835129
Following gene: 110835127
Centisome position: 82.98
GC content: 54.49
Gene sequence:
>1536_bases ATGGGTTCTGTGAAGTTGCAAGCGCGGTTGCTTGCCGTTTTCCTTTTGTTGCTGGGCGGCGGAAGTATTGCTTATCAGCT GTTGGTGCAAAATGTGCCGCTGAGTCAGGATGAGAAAGACCCGGTTTGGGTGGTCGATTCTCAGGTGTCTTTTGTCGCAA AGGCCAATAAGCCTGTCAAAGTACGTATGTTTGTGCCACCGCTGGGGGCTGGCTATACCACTCTTAACGAGAGTTTTATT TCCAATAATTACGGCGTAAATGTGAATGTGGATAAGGGTAACCGCCAGGTTACTTGGTCATCCCGCCGCGCCGAAGGCAA TCAGTACCTCTATTACCGCCTTATGTTGACTCCTCGCTATGCGGATGTGCCGGAGAAGGATCCGGGGCCCCAATTCCGGC CTGCGCCTACTCTGGATGGCCCAGAAAAGCTGGCTGCGGACGCGTTGCTTGAGCCTATTCGTCAGCACTCAGCGGATGTG GAAACCTTTATCAGTGAGACCATCAAGCGGGTTAATGAGCTTGAAAACGATAATGTTCAGCTTCTGCTGGGCAGCGATGT AAGTCCGGAGAACCGGGCTAAAGTGATCGATCTGCTGCTGGCGGTGGCGCATATTCCTGCGGAGCCGGTGCATACCTTGC GGCTGGCGGAGAGCCAAGGGCAGCAACCTGAGCTTTGGTTGCGTAGTTTTAACGGCAAGGAATGGCTCTATTTCAACCCG CTCAATGGTCAGCAGGGGCTGCCGGATGATCGTCTGGTTTGGTGGAGCGGGCCTGGGCCGCTGTTGAATATCGAAGGCGG CAAGTCTGCGGATGTGAGCTTCAGCGTGCACGAAAACGAAATGAGCGCGCTGCAGTTGGCTCAGTCTCTACGTCTGAAAG ACGTGAGTAGCTTTATTGATTTCTCCTTGTATGAACTACCGCTTCCTGCTCAGCAGCTGTACCGCATTCTGGTGATGATC CCGGTGGGGGTACTGCTGGTGCTGTTTATCCGTTCTCTTATCGGTATGGAAACCCTGGGTACCTTTACACCCGTGTTGAT CGCCTTGGCCTTCCGCGAGACGCAAGTGGTCTGGGGGGGGTTGTTGTTTACGTCCATCACCGCCATCGGGCTGTCTGTGC GCTCCTATCTCGAACATCTTAAATTACAGTTATTGCCCCGGCTTTCCGTGGTGCTTACCTTTGTGGTGATCGCTATGGCA CTGATTAGCCTGCTGGGCTACAAGCTGGGCATCGGTTCAGGTTTGTCGGTGGCGCTGTTCCCTATGGTGATTCTGACCAT GGTGATCGAGCGGACGTCCATCGTTTGGGAAGAGCGTGGCGGGACCCAGTCCTTGAAAGTGGCACTGGGAACGCTGGTGG CGGCGATTTTCTGCCACTTGCTGATGGTGTGGCAGCCGCTGGTGTATTTCGTGTTCACCTTCCCAGGCGTGCTGCTTTGC CTGGCGGCCATTATGGTATTGATGGGCCATTACCGTGGCTATCGCCTCACGGAGCTGTTGCGTTTTCGTGCCATGGTGGA CGGGGATAAGCACTAA
Upstream 100 bases:
>100_bases CGTCGTTATCAATGGCGGCTGGAGAGCCTGATTGTCAGGACAGTAAGGATAATGTTGTCGAAAGCGACGACCAAACGATG GAGGCTGCCGAGGCGCTATA
Downstream 100 bases:
>100_bases TGTTCTGGTCTAAAACCCGAAAAGCCCTGCGTGCCCGTGGTGTGATGGGCATTAACCAACGGAACGGCGATTACATTCTT CGCTACAATAAGCGCAGCTT
Product: hypothetical protein
Products: NA
Alternate protein names: Membrane-Associated HD Superfamily Hydrolase; GoNADoliberin III-Like Protein; Transglutaminase-Like; Transglutaminase Domain-Containing Protein
Number of amino acids: Translated: 511; Mature: 510
Protein sequence:
>511_residues MGSVKLQARLLAVFLLLLGGGSIAYQLLVQNVPLSQDEKDPVWVVDSQVSFVAKANKPVKVRMFVPPLGAGYTTLNESFI SNNYGVNVNVDKGNRQVTWSSRRAEGNQYLYYRLMLTPRYADVPEKDPGPQFRPAPTLDGPEKLAADALLEPIRQHSADV ETFISETIKRVNELENDNVQLLLGSDVSPENRAKVIDLLLAVAHIPAEPVHTLRLAESQGQQPELWLRSFNGKEWLYFNP LNGQQGLPDDRLVWWSGPGPLLNIEGGKSADVSFSVHENEMSALQLAQSLRLKDVSSFIDFSLYELPLPAQQLYRILVMI PVGVLLVLFIRSLIGMETLGTFTPVLIALAFRETQVVWGGLLFTSITAIGLSVRSYLEHLKLQLLPRLSVVLTFVVIAMA LISLLGYKLGIGSGLSVALFPMVILTMVIERTSIVWEERGGTQSLKVALGTLVAAIFCHLLMVWQPLVYFVFTFPGVLLC LAAIMVLMGHYRGYRLTELLRFRAMVDGDKH
Sequences:
>Translated_511_residues MGSVKLQARLLAVFLLLLGGGSIAYQLLVQNVPLSQDEKDPVWVVDSQVSFVAKANKPVKVRMFVPPLGAGYTTLNESFI SNNYGVNVNVDKGNRQVTWSSRRAEGNQYLYYRLMLTPRYADVPEKDPGPQFRPAPTLDGPEKLAADALLEPIRQHSADV ETFISETIKRVNELENDNVQLLLGSDVSPENRAKVIDLLLAVAHIPAEPVHTLRLAESQGQQPELWLRSFNGKEWLYFNP LNGQQGLPDDRLVWWSGPGPLLNIEGGKSADVSFSVHENEMSALQLAQSLRLKDVSSFIDFSLYELPLPAQQLYRILVMI PVGVLLVLFIRSLIGMETLGTFTPVLIALAFRETQVVWGGLLFTSITAIGLSVRSYLEHLKLQLLPRLSVVLTFVVIAMA LISLLGYKLGIGSGLSVALFPMVILTMVIERTSIVWEERGGTQSLKVALGTLVAAIFCHLLMVWQPLVYFVFTFPGVLLC LAAIMVLMGHYRGYRLTELLRFRAMVDGDKH >Mature_510_residues GSVKLQARLLAVFLLLLGGGSIAYQLLVQNVPLSQDEKDPVWVVDSQVSFVAKANKPVKVRMFVPPLGAGYTTLNESFIS NNYGVNVNVDKGNRQVTWSSRRAEGNQYLYYRLMLTPRYADVPEKDPGPQFRPAPTLDGPEKLAADALLEPIRQHSADVE TFISETIKRVNELENDNVQLLLGSDVSPENRAKVIDLLLAVAHIPAEPVHTLRLAESQGQQPELWLRSFNGKEWLYFNPL NGQQGLPDDRLVWWSGPGPLLNIEGGKSADVSFSVHENEMSALQLAQSLRLKDVSSFIDFSLYELPLPAQQLYRILVMIP VGVLLVLFIRSLIGMETLGTFTPVLIALAFRETQVVWGGLLFTSITAIGLSVRSYLEHLKLQLLPRLSVVLTFVVIAMAL ISLLGYKLGIGSGLSVALFPMVILTMVIERTSIVWEERGGTQSLKVALGTLVAAIFCHLLMVWQPLVYFVFTFPGVLLCL AAIMVLMGHYRGYRLTELLRFRAMVDGDKH
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 56751; Mature: 56620
Theoretical pI: Translated: 6.96; Mature: 6.96
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.4 %Cys (Translated Protein) 2.5 %Met (Translated Protein) 2.9 %Cys+Met (Translated Protein) 0.4 %Cys (Mature Protein) 2.4 %Met (Mature Protein) 2.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MGSVKLQARLLAVFLLLLGGGSIAYQLLVQNVPLSQDEKDPVWVVDSQVSFVAKANKPVK CCCHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCEEEEECCCHHHEECCCCEE VRMFVPPLGAGYTTLNESFISNNYGVNVNVDKGNRQVTWSSRRAEGNQYLYYRLMLTPRY EEEEECCCCCCHHHHHHHHHCCCCCEEEEECCCCEEEEECCCCCCCCEEEEEEEEECCCC ADVPEKDPGPQFRPAPTLDGPEKLAADALLEPIRQHSADVETFISETIKRVNELENDNVQ CCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCCEE LLLGSDVSPENRAKVIDLLLAVAHIPAEPVHTLRLAESQGQQPELWLRSFNGKEWLYFNP EEECCCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCHHHHHCCCCCEEEEEEC LNGQQGLPDDRLVWWSGPGPLLNIEGGKSADVSFSVHENEMSALQLAQSLRLKDVSSFID CCCCCCCCCCCEEEECCCCCEEEECCCCCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHC FSLYELPLPAQQLYRILVMIPVGVLLVLFIRSLIGMETLGTFTPVLIALAFRETQVVWGG CHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH LLFTSITAIGLSVRSYLEHLKLQLLPRLSVVLTFVVIAMALISLLGYKLGIGSGLSVALF HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHH PMVILTMVIERTSIVWEERGGTQSLKVALGTLVAAIFCHLLMVWQPLVYFVFTFPGVLLC HHHHHHHHHHHHHHEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH LAAIMVLMGHYRGYRLTELLRFRAMVDGDKH HHHHHHHHHCCCCHHHHHHHHHHHHHCCCCC >Mature Secondary Structure GSVKLQARLLAVFLLLLGGGSIAYQLLVQNVPLSQDEKDPVWVVDSQVSFVAKANKPVK CCHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCEEEEECCCHHHEECCCCEE VRMFVPPLGAGYTTLNESFISNNYGVNVNVDKGNRQVTWSSRRAEGNQYLYYRLMLTPRY EEEEECCCCCCHHHHHHHHHCCCCCEEEEECCCCEEEEECCCCCCCCEEEEEEEEECCCC ADVPEKDPGPQFRPAPTLDGPEKLAADALLEPIRQHSADVETFISETIKRVNELENDNVQ CCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCCEE LLLGSDVSPENRAKVIDLLLAVAHIPAEPVHTLRLAESQGQQPELWLRSFNGKEWLYFNP EEECCCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCHHHHHCCCCCEEEEEEC LNGQQGLPDDRLVWWSGPGPLLNIEGGKSADVSFSVHENEMSALQLAQSLRLKDVSSFID CCCCCCCCCCCEEEECCCCCEEEECCCCCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHC FSLYELPLPAQQLYRILVMIPVGVLLVLFIRSLIGMETLGTFTPVLIALAFRETQVVWGG CHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH LLFTSITAIGLSVRSYLEHLKLQLLPRLSVVLTFVVIAMALISLLGYKLGIGSGLSVALF HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHH PMVILTMVIERTSIVWEERGGTQSLKVALGTLVAAIFCHLLMVWQPLVYFVFTFPGVLLC HHHHHHHHHHHHHHEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH LAAIMVLMGHYRGYRLTELLRFRAMVDGDKH HHHHHHHHHCCCCHHHHHHHHHHHHHCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA