| Definition | Alcanivorax borkumensis SK2 chromosome, complete genome. |
|---|---|
| Accession | NC_008260 |
| Length | 3,120,143 |
Click here to switch to the map view.
The map label for this gene is priB
Identifier: 110835051
GI number: 110835051
Start: 2499529
End: 2499837
Strand: Reverse
Name: priB
Synonym: ABO_2190
Alternate gene names: NA
Gene position: 2499837-2499529 (Counterclockwise)
Preceding gene: 110835052
Following gene: 110835050
Centisome position: 80.12
GC content: 57.93
Gene sequence:
>309_bases TTGGAAAGCAACCACTGCGAACTCACTGGTGTGATCGTCACCTTAGAAAAGGTGGCCCTGACTCCAGCCGGAGTGCCCCG CCAGAGAATCTGGTTGGAGCATCGCTCTCGGCAACTGGAAGACGGACATCCCCGTGAAGTCCAGGCCCGCATTGCCGTTA TTCTGGCAGGTGGGATGACCCAGCAGGCCGCAGGCCTGAAAGAGGGTCAGCGAATCAAGGTAATCGGATGCCTCAGCCGT GCCGGTTACAAGGGAGACGCCCGGGACCGTTTGCAATTGCTTGCCCAAACGCTGCAAAGCCTTAACTAA
Upstream 100 bases:
>100_bases ATGCCGTAATCCGTCACCTCGTAATTCGTCGCGACAACGCTATTACTGAGCCGTCGCCGCTGGCGAAGCATGACGAGAAG GAAGGGGCTGCCAGCTAACT
Downstream 100 bases:
>100_bases GGATTCGACAGGAGATTATCCAATGGCCCGTTTTTATCGCCGCCGCAAGTTCTGCCGCTTTACTGCGGAAGGTGTTGAGT ACATCGATTACAAAGATCTC
Product: primosomal replication protein N
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 102; Mature: 102
Protein sequence:
>102_residues MESNHCELTGVIVTLEKVALTPAGVPRQRIWLEHRSRQLEDGHPREVQARIAVILAGGMTQQAAGLKEGQRIKVIGCLSR AGYKGDARDRLQLLAQTLQSLN
Sequences:
>Translated_102_residues MESNHCELTGVIVTLEKVALTPAGVPRQRIWLEHRSRQLEDGHPREVQARIAVILAGGMTQQAAGLKEGQRIKVIGCLSR AGYKGDARDRLQLLAQTLQSLN >Mature_102_residues MESNHCELTGVIVTLEKVALTPAGVPRQRIWLEHRSRQLEDGHPREVQARIAVILAGGMTQQAAGLKEGQRIKVIGCLSR AGYKGDARDRLQLLAQTLQSLN
Specific function: Unknown
COG id: COG2965
COG function: function code L; Primosomal replication protein N
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 11223; Mature: 11223
Theoretical pI: Translated: 10.04; Mature: 10.04
Prosite motif: PS50935 SSB
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.0 %Cys (Translated Protein) 2.0 %Met (Translated Protein) 3.9 %Cys+Met (Translated Protein) 2.0 %Cys (Mature Protein) 2.0 %Met (Mature Protein) 3.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MESNHCELTGVIVTLEKVALTPAGVPRQRIWLEHRSRQLEDGHPREVQARIAVILAGGMT CCCCCCEEEEHEEEHHHHHCCCCCCCHHHHHHHHHHCCCCCCCCHHHHHEEEEEEECCCC QQAAGLKEGQRIKVIGCLSRAGYKGDARDRLQLLAQTLQSLN HHHCCCCCCCEEEEEEECCCCCCCCCHHHHHHHHHHHHHHCC >Mature Secondary Structure MESNHCELTGVIVTLEKVALTPAGVPRQRIWLEHRSRQLEDGHPREVQARIAVILAGGMT CCCCCCEEEEHEEEHHHHHCCCCCCCHHHHHHHHHHCCCCCCCCHHHHHEEEEEEECCCC QQAAGLKEGQRIKVIGCLSRAGYKGDARDRLQLLAQTLQSLN HHHCCCCCCCEEEEEEECCCCCCCCCHHHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA