| Definition | Alcanivorax borkumensis SK2 chromosome, complete genome. |
|---|---|
| Accession | NC_008260 |
| Length | 3,120,143 |
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The map label for this gene is foxA [H]
Identifier: 110834952
GI number: 110834952
Start: 2381130
End: 2383367
Strand: Reverse
Name: foxA [H]
Synonym: ABO_2091
Alternate gene names: 110834952
Gene position: 2383367-2381130 (Counterclockwise)
Preceding gene: 110834953
Following gene: 110834951
Centisome position: 76.39
GC content: 51.97
Gene sequence:
>2238_bases ATGGGGAATCGGACCGAGAGCGGGCTGATCCGGGGGCTGAAGTGGGGCCGCAATCCACTGGCGCTGGCAATAGCGGTGGC AATGGCGGCATCACCTGTCTGGGCAGAAGAACAGCAGGACGCTGATGAATTGCAGACCATCAAGGTGAATGCCGAGCAGT CGGACGATGTATACGGTGGTGATGATTTTGGTTATGTAGGGCAGCGCAGCCTGACGGCCACTAAAACGGATACACCGGTA AAAGAAGCACCTCGTGCGGTTTCTATTGTTACCCGTGAACAGATGGATGATCGTGCTTCCGTCAGCATCGCAGATGCGCT GCAGTACACGCCGAGTATCCAGGCCAACTTCTATGGCGAAGATAACAAACAAGACTGGTTTGTTATTCGTGGTTTCAAAC AGGCGAACAATGGTTTGTACCGTGATGGCACACGAGTTTATTCCTATGGCTTTTACAGCTGGCAGCTTGATCCTTTTGCC CAGGAGCGTGTAGAAATTATGCGTGGTCCGGCGTCTGTGTTGTACGGGCAGACCCCTCCCGGCGGTGTGATCAATGTAAT CAGTAAGCGTCCTCAGGATTATTCTTTTGGTTCCGTAACCGCGGAATACGGCAGTTATGACCGCAAGCAAATATCTGTTG ATGTAGGTGGGGCGCCCTCTGAAGATGTGTCTTGGCGTGTTATTGCTTTGGGCCGGGAAAACGGCACCCAAGTGGACGAC CTGGAAGCTGAGCGCACCATGCTGGCACCGTCTCTAAAACTGGGGCTAGGTGATCGAACTGAGCTGACGCTGTTGGCCTC CTATCAGAAAGATGACTCTGATCCGTACCTGCAGTTTCTGCCATCCAGCGGTACGATTTCTCCAAACCCCAATGGCAAGA TTGACGATGATGTTGCCATTGGCAACCTGGATTACGAGAAGTTTGAGCGTACCCAGGTCTCGTTCGGTTATCAGCTGGAT CATGCGTTTAATGATTCGACTAGTTTCCAGCAGAGTGCCCGCTACCAGCATATTGATGTAGATCTGAAGCAAATGTACAC ACTGGGGTATATGCCGGGCAGTGGCGACTCGCAAGCAATTCGTGGCCTTACTGATGAAGACGGTGACGCCTACGGCGTTA ACCTGGATAACCGTTTGATTCATACGTGGTCGATTAATAACGTCGAGCATACCTTGCTGGCAGGGCTTGATTATCAAAGC CTGCACATTGATGGCAAAAGCTTTGGTGATCCGTTGATGGGGTACGAGGCTGCGCCGGGGGTGTTTGCGCCTGCGACGTT GAACCCCTTTGACCCACAGTATCGCGATGCCAGTGAGCTGACCCCGGTTTCCTGTAATTTCAGCACTCTTGTGTGTACCG AAGTAACGGAGCGGCAGCGCACCACTATCGATGCGTATCAGGTGGGTGGTTACCTACAGGATCAGATGAAATTTGATAAC CAACTGGTGCTGACCGTTGGGGCTCGTTTTGACCGCGCCAGTAGTGAGATCGAGAATAAATCCACGGGTGTTGAGCAGAA AATCGACAACGATAAATGGACCGCCAACACGGGCCTCGCTTGGTTGATAAATGATAACGTGACCGCGTACACCAGCTATT CGCAGTTTTTCCAGCCAATTCTACAGCTGGATCAGAATGGCGAAGCAGCTAAGCCTCAGGAAGGCGATCAGATCGAAGTG GGAATCAAGTTCCAGCCGGAAGGCATGGACGGCTACTTCAACGCGGCGGCGTTTAAGATTACCCAAGAAAACTTGGCTTC CGGTGCAGCGGGTACACCTGCCTTTAAGCAGATTGGTGAAGTGGAAAGTGAAGGGATTGAATTGGAAGCCGTTACCAATA TCACCCCGAGCTTGAGCTTGTTAGCGAATGCGACCTGGATGAACCCGGAAATTGTTTCCGACAGCACCCCTGCTGAAGAA GGCAATCGCCCGGTGAATATTGCGGATACTCTGTACTCTGCCTGGGCTAAGTACACCTTCTTGGATGGTCCGCTGAATGG CTTCGCCATTGGTTCCGGCGTGCGTTACGTCAGCGACACCTATGGCGATAATCTTGAAACGTTGAAAGTGCCGTCCTATA CCCTTTGGGATGCCACGGTGAGCTATCGCTACAAAGACTTCAAGTTCCAAGTGGCGGCGAAAAATCTGGAAGACAAAGAG TATGTCGCTACCTGTGATTATTACTGCTGGTATGGCGACCGTCGCAGTGTGATCGGTAGCGTGACTTATGCGTGGTAA
Upstream 100 bases:
>100_bases TCATTGTTGCTGTGCACTAGTCGTGAGCTTCTCAATATGTATAATGCGGTTGCGAATCATTACTATTACTATGTGTCTTA CGATTGCTAGGAGAACGACC
Downstream 100 bases:
>100_bases TGCCCGCCACACCATTATGCTGCTGCCCAACGGGCAGCAGTTGGATGTGTTCGATCAGGAGCTGGCGCCGCAATGGCGGT GCCAGTGTAATGATCAAGAT
Product: ferrioxamine receptor
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 745; Mature: 744
Protein sequence:
>745_residues MGNRTESGLIRGLKWGRNPLALAIAVAMAASPVWAEEQQDADELQTIKVNAEQSDDVYGGDDFGYVGQRSLTATKTDTPV KEAPRAVSIVTREQMDDRASVSIADALQYTPSIQANFYGEDNKQDWFVIRGFKQANNGLYRDGTRVYSYGFYSWQLDPFA QERVEIMRGPASVLYGQTPPGGVINVISKRPQDYSFGSVTAEYGSYDRKQISVDVGGAPSEDVSWRVIALGRENGTQVDD LEAERTMLAPSLKLGLGDRTELTLLASYQKDDSDPYLQFLPSSGTISPNPNGKIDDDVAIGNLDYEKFERTQVSFGYQLD HAFNDSTSFQQSARYQHIDVDLKQMYTLGYMPGSGDSQAIRGLTDEDGDAYGVNLDNRLIHTWSINNVEHTLLAGLDYQS LHIDGKSFGDPLMGYEAAPGVFAPATLNPFDPQYRDASELTPVSCNFSTLVCTEVTERQRTTIDAYQVGGYLQDQMKFDN QLVLTVGARFDRASSEIENKSTGVEQKIDNDKWTANTGLAWLINDNVTAYTSYSQFFQPILQLDQNGEAAKPQEGDQIEV GIKFQPEGMDGYFNAAAFKITQENLASGAAGTPAFKQIGEVESEGIELEAVTNITPSLSLLANATWMNPEIVSDSTPAEE GNRPVNIADTLYSAWAKYTFLDGPLNGFAIGSGVRYVSDTYGDNLETLKVPSYTLWDATVSYRYKDFKFQVAAKNLEDKE YVATCDYYCWYGDRRSVIGSVTYAW
Sequences:
>Translated_745_residues MGNRTESGLIRGLKWGRNPLALAIAVAMAASPVWAEEQQDADELQTIKVNAEQSDDVYGGDDFGYVGQRSLTATKTDTPV KEAPRAVSIVTREQMDDRASVSIADALQYTPSIQANFYGEDNKQDWFVIRGFKQANNGLYRDGTRVYSYGFYSWQLDPFA QERVEIMRGPASVLYGQTPPGGVINVISKRPQDYSFGSVTAEYGSYDRKQISVDVGGAPSEDVSWRVIALGRENGTQVDD LEAERTMLAPSLKLGLGDRTELTLLASYQKDDSDPYLQFLPSSGTISPNPNGKIDDDVAIGNLDYEKFERTQVSFGYQLD HAFNDSTSFQQSARYQHIDVDLKQMYTLGYMPGSGDSQAIRGLTDEDGDAYGVNLDNRLIHTWSINNVEHTLLAGLDYQS LHIDGKSFGDPLMGYEAAPGVFAPATLNPFDPQYRDASELTPVSCNFSTLVCTEVTERQRTTIDAYQVGGYLQDQMKFDN QLVLTVGARFDRASSEIENKSTGVEQKIDNDKWTANTGLAWLINDNVTAYTSYSQFFQPILQLDQNGEAAKPQEGDQIEV GIKFQPEGMDGYFNAAAFKITQENLASGAAGTPAFKQIGEVESEGIELEAVTNITPSLSLLANATWMNPEIVSDSTPAEE GNRPVNIADTLYSAWAKYTFLDGPLNGFAIGSGVRYVSDTYGDNLETLKVPSYTLWDATVSYRYKDFKFQVAAKNLEDKE YVATCDYYCWYGDRRSVIGSVTYAW >Mature_744_residues GNRTESGLIRGLKWGRNPLALAIAVAMAASPVWAEEQQDADELQTIKVNAEQSDDVYGGDDFGYVGQRSLTATKTDTPVK EAPRAVSIVTREQMDDRASVSIADALQYTPSIQANFYGEDNKQDWFVIRGFKQANNGLYRDGTRVYSYGFYSWQLDPFAQ ERVEIMRGPASVLYGQTPPGGVINVISKRPQDYSFGSVTAEYGSYDRKQISVDVGGAPSEDVSWRVIALGRENGTQVDDL EAERTMLAPSLKLGLGDRTELTLLASYQKDDSDPYLQFLPSSGTISPNPNGKIDDDVAIGNLDYEKFERTQVSFGYQLDH AFNDSTSFQQSARYQHIDVDLKQMYTLGYMPGSGDSQAIRGLTDEDGDAYGVNLDNRLIHTWSINNVEHTLLAGLDYQSL HIDGKSFGDPLMGYEAAPGVFAPATLNPFDPQYRDASELTPVSCNFSTLVCTEVTERQRTTIDAYQVGGYLQDQMKFDNQ LVLTVGARFDRASSEIENKSTGVEQKIDNDKWTANTGLAWLINDNVTAYTSYSQFFQPILQLDQNGEAAKPQEGDQIEVG IKFQPEGMDGYFNAAAFKITQENLASGAAGTPAFKQIGEVESEGIELEAVTNITPSLSLLANATWMNPEIVSDSTPAEEG NRPVNIADTLYSAWAKYTFLDGPLNGFAIGSGVRYVSDTYGDNLETLKVPSYTLWDATVSYRYKDFKFQVAAKNLEDKEY VATCDYYCWYGDRRSVIGSVTYAW
Specific function: Involved in the initial step of iron uptake by binding chrysobactin, an iron chelatin siderophore that allows the bacteria to extract iron from the environment [H]
COG id: COG1629
COG function: function code P; Outer membrane receptor proteins, mostly Fe transport
Gene ontology:
Cell location: Cell outer membrane; Multi-pass membrane protein [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the tonB-dependent receptor family [H]
Homologues:
Organism=Escherichia coli, GI1786344, Length=758, Percent_Identity=30.2110817941952, Blast_Score=335, Evalue=5e-93, Organism=Escherichia coli, GI1787024, Length=768, Percent_Identity=23.5677083333333, Blast_Score=140, Evalue=3e-34, Organism=Escherichia coli, GI1787723, Length=688, Percent_Identity=22.2383720930233, Blast_Score=87, Evalue=5e-18, Organism=Escherichia coli, GI1787344, Length=343, Percent_Identity=25.6559766763848, Blast_Score=81, Evalue=3e-16, Organism=Escherichia coli, GI1788478, Length=139, Percent_Identity=29.4964028776978, Blast_Score=69, Evalue=1e-12,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR012910 - InterPro: IPR000531 - InterPro: IPR010916 - InterPro: IPR010105 [H]
Pfam domain/function: PF07715 Plug; PF00593 TonB_dep_Rec [H]
EC number: NA
Molecular weight: Translated: 82411; Mature: 82279
Theoretical pI: Translated: 4.20; Mature: 4.20
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 1.5 %Met (Translated Protein) 2.0 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 1.3 %Met (Mature Protein) 1.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MGNRTESGLIRGLKWGRNPLALAIAVAMAASPVWAEEQQDADELQTIKVNAEQSDDVYGG CCCCCCHHHHHHHHCCCCHHHHHHHHHHHCCCCCCCCCCCCCCEEEEEEECCCCCCCCCC DDFGYVGQRSLTATKTDTPVKEAPRAVSIVTREQMDDRASVSIADALQYTPSIQANFYGE CCCCCCCCCCEEECCCCCCHHHCCCEEEEEEHHHCCCCCCEEHHHHHHCCCCCEEEECCC DNKQDWFVIRGFKQANNGLYRDGTRVYSYGFYSWQLDPFAQERVEIMRGPASVLYGQTPP CCCCCEEEEEEEHHHCCCCCCCCCEEEEEEEEEEEECHHHHHHHHHHCCCHHHEECCCCC GGVINVISKRPQDYSFGSVTAEYGSYDRKQISVDVGGAPSEDVSWRVIALGRENGTQVDD CCHHHHHHCCCCCCCCCCEEECCCCCCCEEEEEEECCCCCCCCCEEEEEEECCCCCCCCC LEAERTMLAPSLKLGLGDRTELTLLASYQKDDSDPYLQFLPSSGTISPNPNGKIDDDVAI CCHHHHHCCCCCEECCCCCCEEEEEEECCCCCCCCEEEEECCCCCCCCCCCCCCCCCEEE GNLDYEKFERTQVSFGYQLDHAFNDSTSFQQSARYQHIDVDLKQMYTLGYMPGSGDSQAI CCCCHHHHHHEEEECCEEEECCCCCCCCHHHHCCEEEECCCHHHHEEEECCCCCCCHHHH RGLTDEDGDAYGVNLDNRLIHTWSINNVEHTLLAGLDYQSLHIDGKSFGDPLMGYEAAPG CCCCCCCCCEEEECCCCCEEEEEECCCCCEEEEECCCCEEEEECCCCCCCCCCCCCCCCC VFAPATLNPFDPQYRDASELTPVSCNFSTLVCTEVTERQRTTIDAYQVGGYLQDQMKFDN EECCCCCCCCCCCCCCCCCCCEEECCCEEEEEEHHHHHHHCEEEHHHHCCCHHHHHCCCC QLVLTVGARFDRASSEIENKSTGVEQKIDNDKWTANTGLAWLINDNVTAYTSYSQFFQPI EEEEEECCCCCHHHHHHHHCCCCCHHHCCCCCEEECCCEEEEEECCEEEEECHHHHHHHH LQLDQNGEAAKPQEGDQIEVGIKFQPEGMDGYFNAAAFKITQENLASGAAGTPAFKQIGE HHHCCCCCCCCCCCCCEEEEEEEECCCCCCCCCCEEEEEEEHHHHCCCCCCCHHHHHHHC VESEGIELEAVTNITPSLSLLANATWMNPEIVSDSTPAEEGNRPVNIADTLYSAWAKYTF HHHCCEEEEEECCCCCCHHHHCCCEECCCEEECCCCCHHCCCCCEEHHHHHHHHHHHEEE LDGPLNGFAIGSGVRYVSDTYGDNLETLKVPSYTLWDATVSYRYKDFKFQVAAKNLEDKE ECCCCCCEEECCCCEEEHHCCCCCCEEEECCCEEEECCEEEEEEECEEEEEEECCCCCCC YVATCDYYCWYGDRRSVIGSVTYAW EEEEECEEEEECCCCCEEEEEEECC >Mature Secondary Structure GNRTESGLIRGLKWGRNPLALAIAVAMAASPVWAEEQQDADELQTIKVNAEQSDDVYGG CCCCCHHHHHHHHCCCCHHHHHHHHHHHCCCCCCCCCCCCCCEEEEEEECCCCCCCCCC DDFGYVGQRSLTATKTDTPVKEAPRAVSIVTREQMDDRASVSIADALQYTPSIQANFYGE CCCCCCCCCCEEECCCCCCHHHCCCEEEEEEHHHCCCCCCEEHHHHHHCCCCCEEEECCC DNKQDWFVIRGFKQANNGLYRDGTRVYSYGFYSWQLDPFAQERVEIMRGPASVLYGQTPP CCCCCEEEEEEEHHHCCCCCCCCCEEEEEEEEEEEECHHHHHHHHHHCCCHHHEECCCCC GGVINVISKRPQDYSFGSVTAEYGSYDRKQISVDVGGAPSEDVSWRVIALGRENGTQVDD CCHHHHHHCCCCCCCCCCEEECCCCCCCEEEEEEECCCCCCCCCEEEEEEECCCCCCCCC LEAERTMLAPSLKLGLGDRTELTLLASYQKDDSDPYLQFLPSSGTISPNPNGKIDDDVAI CCHHHHHCCCCCEECCCCCCEEEEEEECCCCCCCCEEEEECCCCCCCCCCCCCCCCCEEE GNLDYEKFERTQVSFGYQLDHAFNDSTSFQQSARYQHIDVDLKQMYTLGYMPGSGDSQAI CCCCHHHHHHEEEECCEEEECCCCCCCCHHHHCCEEEECCCHHHHEEEECCCCCCCHHHH RGLTDEDGDAYGVNLDNRLIHTWSINNVEHTLLAGLDYQSLHIDGKSFGDPLMGYEAAPG CCCCCCCCCEEEECCCCCEEEEEECCCCCEEEEECCCCEEEEECCCCCCCCCCCCCCCCC VFAPATLNPFDPQYRDASELTPVSCNFSTLVCTEVTERQRTTIDAYQVGGYLQDQMKFDN EECCCCCCCCCCCCCCCCCCCEEECCCEEEEEEHHHHHHHCEEEHHHHCCCHHHHHCCCC QLVLTVGARFDRASSEIENKSTGVEQKIDNDKWTANTGLAWLINDNVTAYTSYSQFFQPI EEEEEECCCCCHHHHHHHHCCCCCHHHCCCCCEEECCCEEEEEECCEEEEECHHHHHHHH LQLDQNGEAAKPQEGDQIEVGIKFQPEGMDGYFNAAAFKITQENLASGAAGTPAFKQIGE HHHCCCCCCCCCCCCCEEEEEEEECCCCCCCCCCEEEEEEEHHHHCCCCCCCHHHHHHHC VESEGIELEAVTNITPSLSLLANATWMNPEIVSDSTPAEEGNRPVNIADTLYSAWAKYTF HHHCCEEEEEECCCCCCHHHHCCCEECCCEEECCCCCHHCCCCCEEHHHHHHHHHHHEEE LDGPLNGFAIGSGVRYVSDTYGDNLETLKVPSYTLWDATVSYRYKDFKFQVAAKNLEDKE ECCCCCCEEECCCCEEEHHCCCCCCEEEECCCEEEECCEEEEEEECEEEEEEECCCCCCC YVATCDYYCWYGDRRSVIGSVTYAW EEEEECEEEEECCCCCEEEEEEECC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 8576065 [H]