| Definition | Alcanivorax borkumensis SK2 chromosome, complete genome. |
|---|---|
| Accession | NC_008260 |
| Length | 3,120,143 |
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The map label for this gene is mlp [H]
Identifier: 110834835
GI number: 110834835
Start: 2251683
End: 2253035
Strand: Reverse
Name: mlp [H]
Synonym: ABO_1974
Alternate gene names: 110834835
Gene position: 2253035-2251683 (Counterclockwise)
Preceding gene: 110834838
Following gene: 110834834
Centisome position: 72.21
GC content: 56.61
Gene sequence:
>1353_bases ATGCATATTCATATTCTCGGTATTTGCGGCACCTTTATGGGGTCGCTGGCGCAGCTGGCTAAAGCTCAGGGGCATCAGGT TACTGGCAGTGACCAAAACGTTTACCCGCCCATGAGCGATCAATTGGAAGCGGCGGGTATTGCCTTGACCCAAGGGTATG ATCCGTCGCAACTGGAACCGGCGCCGGATCTAGTGGTTATCGGCAATGCGTTAAGCCGTGGCAACCCGGCAGTGGAAGCA GTACTGGATCGCGGCTTACCCTATACCTCAGGGGCGCAACTGCTCCAAGAGGTGGTGCTTCCCGGTCGCTGGGTGCTAGC TGTTGCCGGAACCCATGGTAAAACCACCACCAGTTCCATGCTGGCCTGGATCTTGGAATATGCGGGTTTAAAGCCTGGTT ATTTGATTGGCGGTGTACCCGGCAATTTCGGAGTATCGGCCCGGTTGGGTGAGACGCCTTTCTTTGTGGTGGAAGCAGAC GAATACGATACGGCGTTTTTTGACAAGCGCAGCAAGTTTGTCCACTACCGTCCGCGCACGGTAATTCTTAATAATTTGGA ATTTGATCACGCGGATATTTTTGCGGATCTGGCCGCTATTCAAACCCAGTTCCATCACCTGATTCGTACTGTGCCGTCCA CCGGTCGCTTGATTCTGCCCCATGGAGAAGCTGCGCTGGAGGAGACCCTGGAAAAAGGCTGCTGGAGTAACGTGGAGCGC TTTGGTAAAGAGGAAGCGCTGGGCTACCGCCTGGATCAGGCCGATGGCTCGAGCTTTACGGTGCTTGAAAGCGGTGAACC GGTGGCGCAGGTGCGTTGGGAGCAAACTGGCCGTCACAGTGTGAACAACGGAATGGCTGCGTTGCTGGCCGCCCGCCATG TGGGTGTGACTTTGGCGGATGGCGCGGCAGCGTTATCGGAGTTTGTGGGTGTGAAGCGGCGCATGGAATTGCGTGGTGAA GTGGGCGGGGTGCGGGTTTACGACGATTTTGCCCATCACCCCACGGCCATTGCCACCACGCTAGATGGACTGCGGCGCAA GGTGGGTAACGGCAAAATACTTGCCATTATTGAGCCTCGCTCTAATACCATGCGCCTAGGGAGCCACAAGGCCGCTTTGG CGGGCAGCACCGGATGCGCTGATGAGGTAATCTGGTATCAGCCGCCGGGCTTGAACTGGTCGCTGGATTCGGTGCTCAGT GAAGCTCCGGTGCCGGCAACGGTGACCGAATCGCTGGATGATATTATTGCCAAGGTAGCAAGTCACAAAGGCGAGCCACT GAGCGTGGTGGTGATGAGCAACGGCGGCTTTGGTGGCATTCACCAGAAGCTGCTGGATGCGTTGGCTGAGTAA
Upstream 100 bases:
>100_bases TAGACAATAGGTTCAACAGGGATTAGACCGTGCTGGCACTTCACCTTGGGAGCCCTTGCCGTTATGGTGCAAGGAATCTA AATGTTGGCAGTTCCTTCTC
Downstream 100 bases:
>100_bases CAGCGACAGACAAGCCTCACGTTGCTGCAAATGATAGTAGTAAGCGTCTTGACGCGTCTGTGCCCGCGCTTTTGTCTTGA GTGCCGGGAGAAAATTGCAA
Product: UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-m eso-diamino
Products: NA
Alternate protein names: Murein peptide ligase [H]
Number of amino acids: Translated: 450; Mature: 450
Protein sequence:
>450_residues MHIHILGICGTFMGSLAQLAKAQGHQVTGSDQNVYPPMSDQLEAAGIALTQGYDPSQLEPAPDLVVIGNALSRGNPAVEA VLDRGLPYTSGAQLLQEVVLPGRWVLAVAGTHGKTTTSSMLAWILEYAGLKPGYLIGGVPGNFGVSARLGETPFFVVEAD EYDTAFFDKRSKFVHYRPRTVILNNLEFDHADIFADLAAIQTQFHHLIRTVPSTGRLILPHGEAALEETLEKGCWSNVER FGKEEALGYRLDQADGSSFTVLESGEPVAQVRWEQTGRHSVNNGMAALLAARHVGVTLADGAAALSEFVGVKRRMELRGE VGGVRVYDDFAHHPTAIATTLDGLRRKVGNGKILAIIEPRSNTMRLGSHKAALAGSTGCADEVIWYQPPGLNWSLDSVLS EAPVPATVTESLDDIIAKVASHKGEPLSVVVMSNGGFGGIHQKLLDALAE
Sequences:
>Translated_450_residues MHIHILGICGTFMGSLAQLAKAQGHQVTGSDQNVYPPMSDQLEAAGIALTQGYDPSQLEPAPDLVVIGNALSRGNPAVEA VLDRGLPYTSGAQLLQEVVLPGRWVLAVAGTHGKTTTSSMLAWILEYAGLKPGYLIGGVPGNFGVSARLGETPFFVVEAD EYDTAFFDKRSKFVHYRPRTVILNNLEFDHADIFADLAAIQTQFHHLIRTVPSTGRLILPHGEAALEETLEKGCWSNVER FGKEEALGYRLDQADGSSFTVLESGEPVAQVRWEQTGRHSVNNGMAALLAARHVGVTLADGAAALSEFVGVKRRMELRGE VGGVRVYDDFAHHPTAIATTLDGLRRKVGNGKILAIIEPRSNTMRLGSHKAALAGSTGCADEVIWYQPPGLNWSLDSVLS EAPVPATVTESLDDIIAKVASHKGEPLSVVVMSNGGFGGIHQKLLDALAE >Mature_450_residues MHIHILGICGTFMGSLAQLAKAQGHQVTGSDQNVYPPMSDQLEAAGIALTQGYDPSQLEPAPDLVVIGNALSRGNPAVEA VLDRGLPYTSGAQLLQEVVLPGRWVLAVAGTHGKTTTSSMLAWILEYAGLKPGYLIGGVPGNFGVSARLGETPFFVVEAD EYDTAFFDKRSKFVHYRPRTVILNNLEFDHADIFADLAAIQTQFHHLIRTVPSTGRLILPHGEAALEETLEKGCWSNVER FGKEEALGYRLDQADGSSFTVLESGEPVAQVRWEQTGRHSVNNGMAALLAARHVGVTLADGAAALSEFVGVKRRMELRGE VGGVRVYDDFAHHPTAIATTLDGLRRKVGNGKILAIIEPRSNTMRLGSHKAALAGSTGCADEVIWYQPPGLNWSLDSVLS EAPVPATVTESLDDIIAKVASHKGEPLSVVVMSNGGFGGIHQKLLDALAE
Specific function: Reutilizes the intact tripeptide L-alanyl-gamma-D- glutamyl-meso-diaminopimelate by linking it to UDP-N-acetylmuramic acid [H]
COG id: COG0773
COG function: function code M; UDP-N-acetylmuramate-alanine ligase
Gene ontology:
Cell location: Secreted [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the MurCDEF family [H]
Homologues:
Organism=Escherichia coli, GI1790680, Length=451, Percent_Identity=59.8669623059867, Blast_Score=542, Evalue=1e-155, Organism=Escherichia coli, GI1786279, Length=376, Percent_Identity=30.0531914893617, Blast_Score=123, Evalue=2e-29,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR004101 - InterPro: IPR013221 - InterPro: IPR000713 - InterPro: IPR005757 - InterPro: IPR016040 [H]
Pfam domain/function: PF01225 Mur_ligase; PF02875 Mur_ligase_C; PF08245 Mur_ligase_M [H]
EC number: 6.3.2.- [C]
Molecular weight: Translated: 48138; Mature: 48138
Theoretical pI: Translated: 5.82; Mature: 5.82
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.7 %Cys (Translated Protein) 1.8 %Met (Translated Protein) 2.4 %Cys+Met (Translated Protein) 0.7 %Cys (Mature Protein) 1.8 %Met (Mature Protein) 2.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MHIHILGICGTFMGSLAQLAKAQGHQVTGSDQNVYPPMSDQLEAAGIALTQGYDPSQLEP CEEEEEEHHHHHHHHHHHHHHHCCCEECCCCCCCCCCCCCCHHHCCEEEECCCCCCCCCC APDLVVIGNALSRGNPAVEAVLDRGLPYTSGAQLLQEVVLPGRWVLAVAGTHGKTTTSSM CCCEEEEECCCCCCCHHHHHHHHCCCCCCHHHHHHHHHHCCCCEEEEEECCCCCCHHHHH LAWILEYAGLKPGYLIGGVPGNFGVSARLGETPFFVVEADEYDTAFFDKRSKFVHYRPRT HHHHHHHHCCCCCEEEECCCCCCCCEEECCCCCEEEEECCCCCHHHHHCCCCEEEECCCE VILNNLEFDHADIFADLAAIQTQFHHLIRTVPSTGRLILPHGEAALEETLEKGCWSNVER EEEECCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCHHHHHHHHHHHHHHHHHH FGKEEALGYRLDQADGSSFTVLESGEPVAQVRWEQTGRHSVNNGMAALLAARHVGVTLAD HCCHHHCCEEEECCCCCEEEEEECCCCCEEEEHHHCCCCCHHCHHHHHHHHHHCCEEEEC GAAALSEFVGVKRRMELRGEVGGVRVYDDFAHHPTAIATTLDGLRRKVGNGKILAIIEPR HHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCEEEEEECCC SNTMRLGSHKAALAGSTGCADEVIWYQPPGLNWSLDSVLSEAPVPATVTESLDDIIAKVA CCCEECCCCCHHHCCCCCCCCCEEEECCCCCCCCHHHHHHCCCCCHHHHHHHHHHHHHHH SHKGEPLSVVVMSNGGFGGIHQKLLDALAE HCCCCCEEEEEEECCCCCHHHHHHHHHHCC >Mature Secondary Structure MHIHILGICGTFMGSLAQLAKAQGHQVTGSDQNVYPPMSDQLEAAGIALTQGYDPSQLEP CEEEEEEHHHHHHHHHHHHHHHCCCEECCCCCCCCCCCCCCHHHCCEEEECCCCCCCCCC APDLVVIGNALSRGNPAVEAVLDRGLPYTSGAQLLQEVVLPGRWVLAVAGTHGKTTTSSM CCCEEEEECCCCCCCHHHHHHHHCCCCCCHHHHHHHHHHCCCCEEEEEECCCCCCHHHHH LAWILEYAGLKPGYLIGGVPGNFGVSARLGETPFFVVEADEYDTAFFDKRSKFVHYRPRT HHHHHHHHCCCCCEEEECCCCCCCCEEECCCCCEEEEECCCCCHHHHHCCCCEEEECCCE VILNNLEFDHADIFADLAAIQTQFHHLIRTVPSTGRLILPHGEAALEETLEKGCWSNVER EEEECCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCHHHHHHHHHHHHHHHHHH FGKEEALGYRLDQADGSSFTVLESGEPVAQVRWEQTGRHSVNNGMAALLAARHVGVTLAD HCCHHHCCEEEECCCCCEEEEEECCCCCEEEEHHHCCCCCHHCHHHHHHHHHHCCEEEEC GAAALSEFVGVKRRMELRGEVGGVRVYDDFAHHPTAIATTLDGLRRKVGNGKILAIIEPR HHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCEEEEEECCC SNTMRLGSHKAALAGSTGCADEVIWYQPPGLNWSLDSVLSEAPVPATVTESLDDIIAKVA CCCEECCCCCHHHCCCCCCCCCEEEECCCCCCCCHHHHHHCCCCCHHHHHHHHHHHHHHH SHKGEPLSVVVMSNGGFGGIHQKLLDALAE HCCCCCEEEEEEECCCCCHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 7610040; 9278503; 2843822; 7984428; 8808921 [H]