The gene/protein map for NC_008260 is currently unavailable.
Definition Alcanivorax borkumensis SK2 chromosome, complete genome.
Accession NC_008260
Length 3,120,143

Click here to switch to the map view.

The map label for this gene is tonB2

Identifier: 110834831

GI number: 110834831

Start: 2248776

End: 2249504

Strand: Direct

Name: tonB2

Synonym: ABO_1970

Alternate gene names: NA

Gene position: 2248776-2249504 (Clockwise)

Preceding gene: 110834830

Following gene: 110834832

Centisome position: 72.07

GC content: 56.1

Gene sequence:

>729_bases
ATGAAACCCCGTAATCTCACCGCTTGGATCGTCTCCATTCTAATTCACGTCAGCGTGCTGGTTACCGTTGGCGCCATGAC
GCTTGCCGGTGGCCGCCCCGCAAAACCGGGCGTTAGTGAAATTGCCATTAACCTGTCTGCTCCACCAGCCCCAAAGGCTG
CGCCGAAAGCGATACCGCCAAAGGCCCAGCCCGCCCCGCAACCGAGAGTCAAACCAAAACCAAAACCCAAGCCTACGCCC
AAACCGGTCGCAAAACCGAAACCGGAACCCAAGCCAGAGCCAGCCCCACAACCTCAGGTAGCAGAAACTGCGGCCACGAA
AACCGAGAATGAAGACACCCACGAAGAAGCCTCGGCACAGCCCCTGACTCAAGGCGCCAAAGGCATGGCGGGCGCCCCAG
GAAAAGGAGTGCATCAATCCGGTGATACAGAAAATGCGCTCAACAAATACCTAGCAAAAGTGCGCGACACCATCGATTAC
AACAAGCAGTATCCGCACCGGGCTAAAATGCGCCGCCAACAAGGGACCGTTAAGGTGTCTTTTGTAATCAATGCGTCTGG
GCGCGCCGAACAGGTAAAGATCACGAAAAGTTCCGGCAGTCGTATTCTGGACCGCGCCACCCAGGAGCTCGTTTCAAGGT
TACGCTTCGACGCCCCCCCCAAAGAGCTGGATAGCAGCCTACCTGTACACGTTATTGCACCGGTGAATTACGATCTGAGC
AATGGCTAA

Upstream 100 bases:

>100_bases
TGCGCAGGCGTTTGGAAACCCTGCAAGGCATGGGTGTGGAACAGGTTCGGCTGGTGACGCAGAGTGACGCAGCAGCAGAA
AGCGCCAGCAAGGTGGCACC

Downstream 100 bases:

>100_bases
CGCCATTACCTCGGCGGCGATCTCTTCCTCCGTCCCGAGTTGATCCCCTGCGCACCTGTCTTTACTGTTGAATGCTTGAT
TAAACAATCACGCTGTCTGG

Product: ferric siderophore transport system periplasmic binding protein

Products: NA

Alternate protein names: NB Protein; NB Family Protein

Number of amino acids: Translated: 242; Mature: 242

Protein sequence:

>242_residues
MKPRNLTAWIVSILIHVSVLVTVGAMTLAGGRPAKPGVSEIAINLSAPPAPKAAPKAIPPKAQPAPQPRVKPKPKPKPTP
KPVAKPKPEPKPEPAPQPQVAETAATKTENEDTHEEASAQPLTQGAKGMAGAPGKGVHQSGDTENALNKYLAKVRDTIDY
NKQYPHRAKMRRQQGTVKVSFVINASGRAEQVKITKSSGSRILDRATQELVSRLRFDAPPKELDSSLPVHVIAPVNYDLS
NG

Sequences:

>Translated_242_residues
MKPRNLTAWIVSILIHVSVLVTVGAMTLAGGRPAKPGVSEIAINLSAPPAPKAAPKAIPPKAQPAPQPRVKPKPKPKPTP
KPVAKPKPEPKPEPAPQPQVAETAATKTENEDTHEEASAQPLTQGAKGMAGAPGKGVHQSGDTENALNKYLAKVRDTIDY
NKQYPHRAKMRRQQGTVKVSFVINASGRAEQVKITKSSGSRILDRATQELVSRLRFDAPPKELDSSLPVHVIAPVNYDLS
NG
>Mature_242_residues
MKPRNLTAWIVSILIHVSVLVTVGAMTLAGGRPAKPGVSEIAINLSAPPAPKAAPKAIPPKAQPAPQPRVKPKPKPKPTP
KPVAKPKPEPKPEPAPQPQVAETAATKTENEDTHEEASAQPLTQGAKGMAGAPGKGVHQSGDTENALNKYLAKVRDTIDY
NKQYPHRAKMRRQQGTVKVSFVINASGRAEQVKITKSSGSRILDRATQELVSRLRFDAPPKELDSSLPVHVIAPVNYDLS
NG

Specific function: Unknown

COG id: COG0810

COG function: function code M; Periplasmic protein TonB, links inner and outer membranes

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 25820; Mature: 25820

Theoretical pI: Translated: 10.76; Mature: 10.76

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
1.7 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
1.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKPRNLTAWIVSILIHVSVLVTVGAMTLAGGRPAKPGVSEIAINLSAPPAPKAAPKAIPP
CCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHEEEECCCCCCCCCCCCCCCC
KAQPAPQPRVKPKPKPKPTPKPVAKPKPEPKPEPAPQPQVAETAATKTENEDTHEEASAQ
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCHHHHHHCC
PLTQGAKGMAGAPGKGVHQSGDTENALNKYLAKVRDTIDYNKQYPHRAKMRRQQGTVKVS
HHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCEEEE
FVINASGRAEQVKITKSSGSRILDRATQELVSRLRFDAPPKELDSSLPVHVIAPVNYDLS
EEEECCCCCEEEEEECCCCHHHHHHHHHHHHHHHCCCCCHHHHHCCCCEEEEECCCCCCC
NG
CC
>Mature Secondary Structure
MKPRNLTAWIVSILIHVSVLVTVGAMTLAGGRPAKPGVSEIAINLSAPPAPKAAPKAIPP
CCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHEEEECCCCCCCCCCCCCCCC
KAQPAPQPRVKPKPKPKPTPKPVAKPKPEPKPEPAPQPQVAETAATKTENEDTHEEASAQ
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCHHHHHHCC
PLTQGAKGMAGAPGKGVHQSGDTENALNKYLAKVRDTIDYNKQYPHRAKMRRQQGTVKVS
HHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCEEEE
FVINASGRAEQVKITKSSGSRILDRATQELVSRLRFDAPPKELDSSLPVHVIAPVNYDLS
EEEECCCCCEEEEEECCCCHHHHHHHHHHHHHHHCCCCCHHHHHCCCCEEEEECCCCCCC
NG
CC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA