| Definition | Alcanivorax borkumensis SK2 chromosome, complete genome. |
|---|---|
| Accession | NC_008260 |
| Length | 3,120,143 |
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The map label for this gene is 110834788
Identifier: 110834788
GI number: 110834788
Start: 2203719
End: 2204447
Strand: Reverse
Name: 110834788
Synonym: ABO_1927
Alternate gene names: NA
Gene position: 2204447-2203719 (Counterclockwise)
Preceding gene: 110834792
Following gene: 110834786
Centisome position: 70.65
GC content: 57.34
Gene sequence:
>729_bases ATGACACCATCTCTGGATTTTTCTTTTGCCCTCCGTACGGGGGATTTGCTGCTTTTTTCCGGCCGGGGCTTTACCAGTGA TGTGATTCGGGTTTTTACGCGCAGTCCCTGGAGCCATATTGGCATGGTGCTTCATCTGCCGGGCCAGCCAGAGCCGTTGG TATTGGAGTCCACTACGCTCAGTGAATGCCCAGACGTTACCCTTGGCTACCCAGTCGCCGGGGTGGCTCTGGTGCCATTG CACAGGAAAATCCAGGATTACTCGGGAGCGGTGGCGGTGCGCCGCCGGCATGGCCCAGACCTGACGGAACGTCAGCAACG AATGGTGGTCCGTATGGCTCGCCGACTTCTACATCGCCCTTACAAAAACTATGTGTTTTGCAATGCGCTGGATGTGCTCA CCGGCTATACCCGGCGTTCAGATCAGCGGGGTTGGTTTTGTTCCGAGCTGGTGGCAGAGCTTTACCGTCGCCTTGGTTGG TTGCCTCTGGACACCCGGCCCAGCACTTTGGTGCCCGGCCATTTCGGGTCCCGTCACATGCGTTTACAGCATGGCAAGTT GGGGCCGGTGGAATGGATTAAATCTGAGACTCCAGGAGCCGCCATGCTCGATGGGGGAGATGCGGCATTTACAGCCAGCG CCGCACTTTATGGCGATATGCCTGCCACTGCTCACCAAACTGTTGGGCATGGAACGCTTCTTCCGCCGCAATCACATGCT GCTGGATAA
Upstream 100 bases:
>100_bases TTTCTCCCTTTCACCAAACCGTGATGCCACTGTCAGAAGGCTGTCATTTGATCTGTTTAATTTCTCGTTCACGGTAGCCA GAAAACCGGGAGCGTCTGTA
Downstream 100 bases:
>100_bases CCCAGATGACAGGCGCCCACATTATCAGCATGCCGGTGCTGTGTTGAGCCAGCGCCATGGCCAGGTGAAGACAGGCAAAG CCCAGATAAATCGGATTACG
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 242; Mature: 241
Protein sequence:
>242_residues MTPSLDFSFALRTGDLLLFSGRGFTSDVIRVFTRSPWSHIGMVLHLPGQPEPLVLESTTLSECPDVTLGYPVAGVALVPL HRKIQDYSGAVAVRRRHGPDLTERQQRMVVRMARRLLHRPYKNYVFCNALDVLTGYTRRSDQRGWFCSELVAELYRRLGW LPLDTRPSTLVPGHFGSRHMRLQHGKLGPVEWIKSETPGAAMLDGGDAAFTASAALYGDMPATAHQTVGHGTLLPPQSHA AG
Sequences:
>Translated_242_residues MTPSLDFSFALRTGDLLLFSGRGFTSDVIRVFTRSPWSHIGMVLHLPGQPEPLVLESTTLSECPDVTLGYPVAGVALVPL HRKIQDYSGAVAVRRRHGPDLTERQQRMVVRMARRLLHRPYKNYVFCNALDVLTGYTRRSDQRGWFCSELVAELYRRLGW LPLDTRPSTLVPGHFGSRHMRLQHGKLGPVEWIKSETPGAAMLDGGDAAFTASAALYGDMPATAHQTVGHGTLLPPQSHA AG >Mature_241_residues TPSLDFSFALRTGDLLLFSGRGFTSDVIRVFTRSPWSHIGMVLHLPGQPEPLVLESTTLSECPDVTLGYPVAGVALVPLH RKIQDYSGAVAVRRRHGPDLTERQQRMVVRMARRLLHRPYKNYVFCNALDVLTGYTRRSDQRGWFCSELVAELYRRLGWL PLDTRPSTLVPGHFGSRHMRLQHGKLGPVEWIKSETPGAAMLDGGDAAFTASAALYGDMPATAHQTVGHGTLLPPQSHAA G
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 26737; Mature: 26606
Theoretical pI: Translated: 9.69; Mature: 9.69
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.2 %Cys (Translated Protein) 2.9 %Met (Translated Protein) 4.1 %Cys+Met (Translated Protein) 1.2 %Cys (Mature Protein) 2.5 %Met (Mature Protein) 3.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTPSLDFSFALRTGDLLLFSGRGFTSDVIRVFTRSPWSHIGMVLHLPGQPEPLVLESTTL CCCCCCEEEEEEECCEEEEECCCCHHHHHHHHHCCCHHHCCEEEECCCCCCCEEEECCCC SECPDVTLGYPVAGVALVPLHRKIQDYSGAVAVRRRHGPDLTERQQRMVVRMARRLLHRP CCCCCCEECCCCHHEEEHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHCC YKNYVFCNALDVLTGYTRRSDQRGWFCSELVAELYRRLGWLPLDTRPSTLVPGHFGSRHM HHCEEEEHHHHHHHCHHCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCEECCCCCCCCCE RLQHGKLGPVEWIKSETPGAAMLDGGDAAFTASAALYGDMPATAHQTVGHGTLLPPQSHA EEECCCCCHHHHHHCCCCCCEEECCCCCCEEEHHHHCCCCCCHHHHHCCCCCCCCCCCCC AG CC >Mature Secondary Structure TPSLDFSFALRTGDLLLFSGRGFTSDVIRVFTRSPWSHIGMVLHLPGQPEPLVLESTTL CCCCCEEEEEEECCEEEEECCCCHHHHHHHHHCCCHHHCCEEEECCCCCCCEEEECCCC SECPDVTLGYPVAGVALVPLHRKIQDYSGAVAVRRRHGPDLTERQQRMVVRMARRLLHRP CCCCCCEECCCCHHEEEHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHCC YKNYVFCNALDVLTGYTRRSDQRGWFCSELVAELYRRLGWLPLDTRPSTLVPGHFGSRHM HHCEEEEHHHHHHHCHHCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCEECCCCCCCCCE RLQHGKLGPVEWIKSETPGAAMLDGGDAAFTASAALYGDMPATAHQTVGHGTLLPPQSHA EEECCCCCHHHHHHCCCCCCEEECCCCCCEEEHHHHCCCCCCHHHHHCCCCCCCCCCCCC AG CC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA