| Definition | Alcanivorax borkumensis SK2 chromosome, complete genome. |
|---|---|
| Accession | NC_008260 |
| Length | 3,120,143 |
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The map label for this gene is 110834764
Identifier: 110834764
GI number: 110834764
Start: 2180657
End: 2181409
Strand: Direct
Name: 110834764
Synonym: ABO_1903
Alternate gene names: NA
Gene position: 2180657-2181409 (Clockwise)
Preceding gene: 110834762
Following gene: 110834765
Centisome position: 69.89
GC content: 56.97
Gene sequence:
>753_bases ATGCCTCATTCTTACCGCCGCGCACCTTGGGTCGCACTCATAGCGACCCTTATTGTGGCCGCAAGCTGCTTGCGACTGGC CTTTTGGCAGCTGGAACGCGCTGAAGAAAAACGCCTGTGGCTAACAGAACAGAACGAACGGGCCACCCTACCACCCGCCG ACCTGCCCACCCTGCTAGCTGATACTGACCCTATGCACCGTCGCATCACTATCACCGGTCACTTCGACAACGCCCACAAC GTGCTCCTAGATAACCGTACCCTCAACGGCGTGGCCGGTTATCACCTGTTGACTCCTTTTGAAACCCGAGAGGGCCGCTG GGTATTAATTAACCGGGGTTGGCTAGCGAGAGGAAACGACCGCGCCACACTACCAACGATCGTCCCCATTGAGGGAAACC AAACCGTCCACGGAACGGCTTATCGCCCCTCCCGGGACGTTTTTGTGCTCAAGGACATGCCATTGCCCAACAATCAGTGG CCATTGCGCGTACAAAAAGTGGATTTTGACGCTATTGGAGAACGACTTGGGGTAGAATTACCGCCCTTTGAAATCCGGGT TACTCCGGAACTGGCGCTGGGCAACAATGTACCACTGCCCCGGCACTGGCAGGACGTGACCGTAATGGGCCCGGAACGAC ACAAGGCCTATGCGCTGCAATGGTTCGCACTGGCGCTGGCCGCTCTGCTGATATATGTTGCCGCCGCACTCCGAAACAGG CGTAAAGCACGCAAGACGCGAGAGGAATTGTAA
Upstream 100 bases:
>100_bases CCTAGCCTGACTGTGCACACACTATCGACAAAGCAAGGCGACAACATAAAACAGCAATCCCCGTTTCGCCGCGCTACTGC TGTCACGAGGGCAGACAACC
Downstream 100 bases:
>100_bases TGTCTCCACGGACCAAGAACATTGCCACCCTAGCGGCAATCATTGCTCCTTTTATCCTGTTTTTTTTGGCCGGACGCTTT CTGATAAACCCCGCGGAGCT
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 250; Mature: 249
Protein sequence:
>250_residues MPHSYRRAPWVALIATLIVAASCLRLAFWQLERAEEKRLWLTEQNERATLPPADLPTLLADTDPMHRRITITGHFDNAHN VLLDNRTLNGVAGYHLLTPFETREGRWVLINRGWLARGNDRATLPTIVPIEGNQTVHGTAYRPSRDVFVLKDMPLPNNQW PLRVQKVDFDAIGERLGVELPPFEIRVTPELALGNNVPLPRHWQDVTVMGPERHKAYALQWFALALAALLIYVAAALRNR RKARKTREEL
Sequences:
>Translated_250_residues MPHSYRRAPWVALIATLIVAASCLRLAFWQLERAEEKRLWLTEQNERATLPPADLPTLLADTDPMHRRITITGHFDNAHN VLLDNRTLNGVAGYHLLTPFETREGRWVLINRGWLARGNDRATLPTIVPIEGNQTVHGTAYRPSRDVFVLKDMPLPNNQW PLRVQKVDFDAIGERLGVELPPFEIRVTPELALGNNVPLPRHWQDVTVMGPERHKAYALQWFALALAALLIYVAAALRNR RKARKTREEL >Mature_249_residues PHSYRRAPWVALIATLIVAASCLRLAFWQLERAEEKRLWLTEQNERATLPPADLPTLLADTDPMHRRITITGHFDNAHNV LLDNRTLNGVAGYHLLTPFETREGRWVLINRGWLARGNDRATLPTIVPIEGNQTVHGTAYRPSRDVFVLKDMPLPNNQWP LRVQKVDFDAIGERLGVELPPFEIRVTPELALGNNVPLPRHWQDVTVMGPERHKAYALQWFALALAALLIYVAAALRNRR KARKTREEL
Specific function: Unknown
COG id: COG3346
COG function: function code S; Uncharacterized conserved protein
Gene ontology:
Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the SURF1 family [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR002994 [H]
Pfam domain/function: PF02104 SURF1 [H]
EC number: NA
Molecular weight: Translated: 28585; Mature: 28454
Theoretical pI: Translated: 10.19; Mature: 10.19
Prosite motif: PS00013 PROKAR_LIPOPROTEIN ; PS00014 ER_TARGET ; PS50895 SURF1
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.4 %Cys (Translated Protein) 1.6 %Met (Translated Protein) 2.0 %Cys+Met (Translated Protein) 0.4 %Cys (Mature Protein) 1.2 %Met (Mature Protein) 1.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPHSYRRAPWVALIATLIVAASCLRLAFWQLERAEEKRLWLTEQNERATLPPADLPTLLA CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEECCCCCCCCCCCCCHHHC DTDPMHRRITITGHFDNAHNVLLDNRTLNGVAGYHLLTPFETREGRWVLINRGWLARGND CCCCCCEEEEEEEECCCCCEEEEECCCCCCCCCEEEECCEECCCCCEEEEECCEEECCCC RATLPTIVPIEGNQTVHGTAYRPSRDVFVLKDMPLPNNQWPLRVQKVDFDAIGERLGVEL CCCCCEEEEECCCCEEEECEECCCCCEEEEECCCCCCCCCCEEEEEECHHHHHHHHCCCC PPFEIRVTPELALGNNVPLPRHWQDVTVMGPERHKAYALQWFALALAALLIYVAAALRNR CCEEEEECCCEECCCCCCCCCCCCCEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH RKARKTREEL HHHHHHHHCC >Mature Secondary Structure PHSYRRAPWVALIATLIVAASCLRLAFWQLERAEEKRLWLTEQNERATLPPADLPTLLA CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEECCCCCCCCCCCCCHHHC DTDPMHRRITITGHFDNAHNVLLDNRTLNGVAGYHLLTPFETREGRWVLINRGWLARGND CCCCCCEEEEEEEECCCCCEEEEECCCCCCCCCEEEECCEECCCCCEEEEECCEEECCCC RATLPTIVPIEGNQTVHGTAYRPSRDVFVLKDMPLPNNQWPLRVQKVDFDAIGERLGVEL CCCCCEEEEECCCCEEEECEECCCCCEEEEECCCCCCCCCCEEEEEECHHHHHHHHCCCC PPFEIRVTPELALGNNVPLPRHWQDVTVMGPERHKAYALQWFALALAALLIYVAAALRNR CCEEEEECCCEECCCCCCCCCCCCCEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH RKARKTREEL HHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 7.0
TargetDB status: NA
Availability: NA
References: NA