| Definition | Alcanivorax borkumensis SK2 chromosome, complete genome. |
|---|---|
| Accession | NC_008260 |
| Length | 3,120,143 |
Click here to switch to the map view.
The map label for this gene is dhbE [H]
Identifier: 110834667
GI number: 110834667
Start: 2056271
End: 2057890
Strand: Direct
Name: dhbE [H]
Synonym: ABO_1806
Alternate gene names: 110834667
Gene position: 2056271-2057890 (Clockwise)
Preceding gene: 110834651
Following gene: 110834669
Centisome position: 65.9
GC content: 56.85
Gene sequence:
>1620_bases ATGATTTTGCACAAACCTGAACTGGTTGAGAAATATACGAACATGGGGCACTGGGGGGACAAGACCCTGCTCCAGCGCGC GGCCGCCAATTGTATCGCCCACCCAGAGCGAGAAGCGGTGGTGGATCCCCCCAACCGGAACGAGCTGGTGGGCACCCCCG CCCAGCGCCTCACCTGGGCAGAGTTCGGCCAGGCAGTGGATGCTACGGCAGCAGAATTGTCGCGCCGCGGCTTTGGTAAG GACGACGTATTAGTGGCCCAGTTACCCAACGTGTGGGAGCTGGCCATGTTGTACCTAGCCGCAGCAAAGGCCGGCGGCTT GCTTTCTGCACTGCCTATGCAATGGCGAAGCAAGGATGTGGGTTATGTGAAAAAAATGACCGAGGCCCGCTTCTACGCGT CGGCTGAGAGCTTTCACGGCTTTGATTACCAAGCTCTAGGCCAGGAGTTGGGTTTCGAGCACTACATCGGCCTGAAAGAA CTGACCGATATTGCCCGCAGCAAACCCAGCCAGGGACCTGAGGTGCCAGTAGAAGCCAATGATATTTTTACGCTGTGCTG GACATCTGGCACTGAGGCAGACCCTAAAGGCTGCCCCATGAGCCACAACAACTGGGAGTACATGATTAACCTCGTGTTCA CCACCTGTGGCTTGCAGCAGGGCGACCGGATTCTATGCGTGGCGCCCCTGGTAAACATGACAGCGGTGGGGGTGAACTAC GTACCTTGGCTAGCGACAGCAGGGACCCTAGTGCTGCACCATCCCATCACGCCGGAGATCTTGCTGCGCCAGCTTACCGA AGAGCGCATTCAATATACCATCCTAGTACCGGCGATGCTGAACATGATCGCCAAACTGCCCAACGTGGACCAGCTCGATC TGTCCAGCGTGCGGACCATCACCACCGGGTCAGCACCGCCTTCTGCCTGGTCCATGCAGGAGTTCAAGCGCCGCTGGGAT ATCGACATCGTCAATATCTGGGGCCAGAACGAAGGCTCCTGCCTAGTGGCCGGCCCCGCCGACGTACCGGACCTGGCTAT GCGGGTGGATCATCTACCCTGGTGGGGCAGAGAAAGCGTCGAATGGCCCTCCGGCATCAATGGCATTGAAGTGAAGATTC TCGGCGACCAAGATGAAGAGATCACCGAGCCCGGAGGCATCGGAGAGCTTTGCTACCGAAGCCCGGGGGTCTTTGCCGGT TACTTCCAACGCCCGGACATCACCGAGCAGTCTTTCACCGCTGACGGTTTCTTCCGCACCGGAGACCTGTTCATTGTGCA AAATGCCAACCACGTAGGCTTTTACGATCGCAAGAAAGACATGGTGATCCGCGGAGGCTTCAACATCTCCAGTGTCGAGG TGGAAAACGCCGTGCTTGGCTTTGATAAGGTGCAAGACGTTGCCGTCATACCCCACCCGGACGAAATCATGGGGGAGCGT GTCTGCATTTGCGTGGTGCCTGCGGATGAGAGCCATCCGCCAGCGTTAGAGGAAATCAATGACTACCTGAAGAGTCAGGG TATGAGTGTTTACAAGCTTCCCGAAAAGATGAGGCTAGTAGATGTCATTCCCCGCAATCCGATAGGTAAGATCATGAAGA AAGAATTGCGGGCTCAGTAA
Upstream 100 bases:
>100_bases CGAAGCACTACTGGCAGGAAGTGGTCCCGAGTGTCGACGTCAACCATCATCGCTTCCAATTGGATGGCAACAACAATAAC CGTCACAGGAGAATTAATTC
Downstream 100 bases:
>100_bases CGCAAAAGGGCCGGAATCTTGTCTTCCGGCCCTTTTTATTGCACTTCTATATCCATTTTTACAGGCTGTACTCATCGGGG ACACGCACAAAATCAAGACA
Product: AMP-binding family protein
Products: NA
Alternate protein names: Dihydroxybenzoic acid-activating enzyme [H]
Number of amino acids: Translated: 539; Mature: 539
Protein sequence:
>539_residues MILHKPELVEKYTNMGHWGDKTLLQRAAANCIAHPEREAVVDPPNRNELVGTPAQRLTWAEFGQAVDATAAELSRRGFGK DDVLVAQLPNVWELAMLYLAAAKAGGLLSALPMQWRSKDVGYVKKMTEARFYASAESFHGFDYQALGQELGFEHYIGLKE LTDIARSKPSQGPEVPVEANDIFTLCWTSGTEADPKGCPMSHNNWEYMINLVFTTCGLQQGDRILCVAPLVNMTAVGVNY VPWLATAGTLVLHHPITPEILLRQLTEERIQYTILVPAMLNMIAKLPNVDQLDLSSVRTITTGSAPPSAWSMQEFKRRWD IDIVNIWGQNEGSCLVAGPADVPDLAMRVDHLPWWGRESVEWPSGINGIEVKILGDQDEEITEPGGIGELCYRSPGVFAG YFQRPDITEQSFTADGFFRTGDLFIVQNANHVGFYDRKKDMVIRGGFNISSVEVENAVLGFDKVQDVAVIPHPDEIMGER VCICVVPADESHPPALEEINDYLKSQGMSVYKLPEKMRLVDVIPRNPIGKIMKKELRAQ
Sequences:
>Translated_539_residues MILHKPELVEKYTNMGHWGDKTLLQRAAANCIAHPEREAVVDPPNRNELVGTPAQRLTWAEFGQAVDATAAELSRRGFGK DDVLVAQLPNVWELAMLYLAAAKAGGLLSALPMQWRSKDVGYVKKMTEARFYASAESFHGFDYQALGQELGFEHYIGLKE LTDIARSKPSQGPEVPVEANDIFTLCWTSGTEADPKGCPMSHNNWEYMINLVFTTCGLQQGDRILCVAPLVNMTAVGVNY VPWLATAGTLVLHHPITPEILLRQLTEERIQYTILVPAMLNMIAKLPNVDQLDLSSVRTITTGSAPPSAWSMQEFKRRWD IDIVNIWGQNEGSCLVAGPADVPDLAMRVDHLPWWGRESVEWPSGINGIEVKILGDQDEEITEPGGIGELCYRSPGVFAG YFQRPDITEQSFTADGFFRTGDLFIVQNANHVGFYDRKKDMVIRGGFNISSVEVENAVLGFDKVQDVAVIPHPDEIMGER VCICVVPADESHPPALEEINDYLKSQGMSVYKLPEKMRLVDVIPRNPIGKIMKKELRAQ >Mature_539_residues MILHKPELVEKYTNMGHWGDKTLLQRAAANCIAHPEREAVVDPPNRNELVGTPAQRLTWAEFGQAVDATAAELSRRGFGK DDVLVAQLPNVWELAMLYLAAAKAGGLLSALPMQWRSKDVGYVKKMTEARFYASAESFHGFDYQALGQELGFEHYIGLKE LTDIARSKPSQGPEVPVEANDIFTLCWTSGTEADPKGCPMSHNNWEYMINLVFTTCGLQQGDRILCVAPLVNMTAVGVNY VPWLATAGTLVLHHPITPEILLRQLTEERIQYTILVPAMLNMIAKLPNVDQLDLSSVRTITTGSAPPSAWSMQEFKRRWD IDIVNIWGQNEGSCLVAGPADVPDLAMRVDHLPWWGRESVEWPSGINGIEVKILGDQDEEITEPGGIGELCYRSPGVFAG YFQRPDITEQSFTADGFFRTGDLFIVQNANHVGFYDRKKDMVIRGGFNISSVEVENAVLGFDKVQDVAVIPHPDEIMGER VCICVVPADESHPPALEEINDYLKSQGMSVYKLPEKMRLVDVIPRNPIGKIMKKELRAQ
Specific function: Activation of the carboxylate group of 2,3-dihydroxy- benzoate (DHB), via ATP-dependent PPi exchange reactions, to the acyladenylate [H]
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasm (Potential) [H]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the ATP-dependent AMP-binding enzyme family [H]
Homologues:
Organism=Homo sapiens, GI156151445, Length=566, Percent_Identity=25.4416961130742, Blast_Score=134, Evalue=3e-31, Organism=Homo sapiens, GI187761345, Length=400, Percent_Identity=27, Blast_Score=111, Evalue=1e-24, Organism=Homo sapiens, GI187761343, Length=400, Percent_Identity=27, Blast_Score=111, Evalue=1e-24, Organism=Homo sapiens, GI58082049, Length=493, Percent_Identity=25.5578093306288, Blast_Score=105, Evalue=1e-22, Organism=Homo sapiens, GI157311624, Length=493, Percent_Identity=24.7464503042596, Blast_Score=105, Evalue=1e-22, Organism=Homo sapiens, GI157311622, Length=493, Percent_Identity=24.7464503042596, Blast_Score=105, Evalue=1e-22, Organism=Homo sapiens, GI122937307, Length=513, Percent_Identity=22.4171539961014, Blast_Score=99, Evalue=7e-21, Organism=Homo sapiens, GI42544132, Length=514, Percent_Identity=23.3463035019455, Blast_Score=96, Evalue=1e-19, Organism=Homo sapiens, GI38505220, Length=487, Percent_Identity=21.5605749486653, Blast_Score=86, Evalue=6e-17, Organism=Homo sapiens, GI115511026, Length=499, Percent_Identity=22.6452905811623, Blast_Score=80, Evalue=5e-15, Organism=Homo sapiens, GI28416953, Length=405, Percent_Identity=24.9382716049383, Blast_Score=80, Evalue=5e-15, Organism=Escherichia coli, GI145693145, Length=546, Percent_Identity=27.2893772893773, Blast_Score=179, Evalue=5e-46, Organism=Escherichia coli, GI1786810, Length=548, Percent_Identity=24.6350364963504, Blast_Score=159, Evalue=4e-40, Organism=Escherichia coli, GI221142682, Length=512, Percent_Identity=25, Blast_Score=134, Evalue=1e-32, Organism=Escherichia coli, GI1788107, Length=375, Percent_Identity=28.5333333333333, Blast_Score=132, Evalue=5e-32, Organism=Caenorhabditis elegans, GI17559526, Length=534, Percent_Identity=25.6554307116105, Blast_Score=150, Evalue=2e-36, Organism=Caenorhabditis elegans, GI17558820, Length=495, Percent_Identity=24.6464646464646, Blast_Score=143, Evalue=2e-34, Organism=Caenorhabditis elegans, GI32563687, Length=488, Percent_Identity=24.7950819672131, Blast_Score=135, Evalue=6e-32, Organism=Caenorhabditis elegans, GI17557194, Length=521, Percent_Identity=24.9520153550864, Blast_Score=131, Evalue=1e-30, Organism=Caenorhabditis elegans, GI17538037, Length=526, Percent_Identity=23.9543726235741, Blast_Score=125, Evalue=8e-29, Organism=Caenorhabditis elegans, GI17531443, Length=570, Percent_Identity=22.8070175438596, Blast_Score=114, Evalue=1e-25, Organism=Caenorhabditis elegans, GI71994703, Length=547, Percent_Identity=22.6691042047532, Blast_Score=103, Evalue=3e-22, Organism=Caenorhabditis elegans, GI71994694, Length=547, Percent_Identity=22.6691042047532, Blast_Score=102, Evalue=4e-22, Organism=Caenorhabditis elegans, GI71994690, Length=547, Percent_Identity=22.6691042047532, Blast_Score=102, Evalue=5e-22, Organism=Caenorhabditis elegans, GI17560308, Length=529, Percent_Identity=24.3856332703214, Blast_Score=100, Evalue=2e-21, Organism=Caenorhabditis elegans, GI71985884, Length=384, Percent_Identity=24.21875, Blast_Score=93, Evalue=4e-19, Organism=Saccharomyces cerevisiae, GI6319699, Length=360, Percent_Identity=23.8888888888889, Blast_Score=108, Evalue=2e-24, Organism=Drosophila melanogaster, GI24581924, Length=534, Percent_Identity=23.0337078651685, Blast_Score=116, Evalue=4e-26, Organism=Drosophila melanogaster, GI18859661, Length=511, Percent_Identity=23.8747553816047, Blast_Score=112, Evalue=8e-25, Organism=Drosophila melanogaster, GI21355181, Length=495, Percent_Identity=24.040404040404, Blast_Score=111, Evalue=1e-24, Organism=Drosophila melanogaster, GI21356441, Length=358, Percent_Identity=24.8603351955307, Blast_Score=84, Evalue=3e-16, Organism=Drosophila melanogaster, GI24653035, Length=385, Percent_Identity=21.8181818181818, Blast_Score=80, Evalue=5e-15, Organism=Drosophila melanogaster, GI281365686, Length=344, Percent_Identity=22.9651162790698, Blast_Score=79, Evalue=1e-14, Organism=Drosophila melanogaster, GI161076582, Length=393, Percent_Identity=22.1374045801527, Blast_Score=77, Evalue=2e-14, Organism=Drosophila melanogaster, GI24648253, Length=357, Percent_Identity=22.4089635854342, Blast_Score=76, Evalue=7e-14, Organism=Drosophila melanogaster, GI24648255, Length=358, Percent_Identity=22.3463687150838, Blast_Score=73, Evalue=4e-13, Organism=Drosophila melanogaster, GI21358303, Length=483, Percent_Identity=20.2898550724638, Blast_Score=67, Evalue=3e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR020845 - InterPro: IPR000873 - InterPro: IPR011963 [H]
Pfam domain/function: PF00501 AMP-binding [H]
EC number: NA
Molecular weight: Translated: 59960; Mature: 59960
Theoretical pI: Translated: 4.84; Mature: 4.84
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.7 %Cys (Translated Protein) 3.2 %Met (Translated Protein) 4.8 %Cys+Met (Translated Protein) 1.7 %Cys (Mature Protein) 3.2 %Met (Mature Protein) 4.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MILHKPELVEKYTNMGHWGDKTLLQRAAANCIAHPEREAVVDPPNRNELVGTPAQRLTWA CCCCCHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHH EFGQAVDATAAELSRRGFGKDDVLVAQLPNVWELAMLYLAAAKAGGLLSALPMQWRSKDV HHHHHHHHHHHHHHHCCCCCCCEEEECCCCHHHHHHHHHHHHHCCCHHHHCCCCCCCCCH GYVKKMTEARFYASAESFHGFDYQALGQELGFEHYIGLKELTDIARSKPSQGPEVPVEAN HHHHHHHHHHHHCCHHHCCCCCHHHHHHHCCHHHHCCHHHHHHHHHCCCCCCCCCCCCCC DIFTLCWTSGTEADPKGCPMSHNNWEYMINLVFTTCGLQQGDRILCVAPLVNMTAVGVNY CEEEEEECCCCCCCCCCCCCCCCCHHHEEEEHHHHCCCCCCCEEEEEECCHHHHHCCCCH VPWLATAGTLVLHHPITPEILLRQLTEERIQYTILVPAMLNMIAKLPNVDQLDLSSVRTI HHHHHCCCEEEEECCCCHHHHHHHHHHHHHEEEEEHHHHHHHHHHCCCCCCCCCCCCEEE TTGSAPPSAWSMQEFKRRWDIDIVNIWGQNEGSCLVAGPADVPDLAMRVDHLPWWGRESV ECCCCCCCCCCHHHHHHHCCCEEEEEECCCCCCEEEECCCCCHHHHHHHHCCCCCCCCCC EWPSGINGIEVKILGDQDEEITEPGGIGELCYRSPGVFAGYFQRPDITEQSFTADGFFRT CCCCCCCCEEEEEECCCCHHHCCCCCCCHHHHCCCCCEEEECCCCCCCCCCCCCCCEEEE GDLFIVQNANHVGFYDRKKDMVIRGGFNISSVEVENAVLGFDKVQDVAVIPHPDEIMGER CCEEEEECCCCCCEECCCCCEEEECCCCCCEEEHHHHHCCCCCCCCEEECCCCHHHCCCE VCICVVPADESHPPALEEINDYLKSQGMSVYKLPEKMRLVDVIPRNPIGKIMKKELRAQ EEEEEEECCCCCCCHHHHHHHHHHHCCCEEEECCCHHEEEEECCCCHHHHHHHHHHCCC >Mature Secondary Structure MILHKPELVEKYTNMGHWGDKTLLQRAAANCIAHPEREAVVDPPNRNELVGTPAQRLTWA CCCCCHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHH EFGQAVDATAAELSRRGFGKDDVLVAQLPNVWELAMLYLAAAKAGGLLSALPMQWRSKDV HHHHHHHHHHHHHHHCCCCCCCEEEECCCCHHHHHHHHHHHHHCCCHHHHCCCCCCCCCH GYVKKMTEARFYASAESFHGFDYQALGQELGFEHYIGLKELTDIARSKPSQGPEVPVEAN HHHHHHHHHHHHCCHHHCCCCCHHHHHHHCCHHHHCCHHHHHHHHHCCCCCCCCCCCCCC DIFTLCWTSGTEADPKGCPMSHNNWEYMINLVFTTCGLQQGDRILCVAPLVNMTAVGVNY CEEEEEECCCCCCCCCCCCCCCCCHHHEEEEHHHHCCCCCCCEEEEEECCHHHHHCCCCH VPWLATAGTLVLHHPITPEILLRQLTEERIQYTILVPAMLNMIAKLPNVDQLDLSSVRTI HHHHHCCCEEEEECCCCHHHHHHHHHHHHHEEEEEHHHHHHHHHHCCCCCCCCCCCCEEE TTGSAPPSAWSMQEFKRRWDIDIVNIWGQNEGSCLVAGPADVPDLAMRVDHLPWWGRESV ECCCCCCCCCCHHHHHHHCCCEEEEEECCCCCCEEEECCCCCHHHHHHHHCCCCCCCCCC EWPSGINGIEVKILGDQDEEITEPGGIGELCYRSPGVFAGYFQRPDITEQSFTADGFFRT CCCCCCCCEEEEEECCCCHHHCCCCCCCHHHHCCCCCEEEECCCCCCCCCCCCCCCEEEE GDLFIVQNANHVGFYDRKKDMVIRGGFNISSVEVENAVLGFDKVQDVAVIPHPDEIMGER CCEEEEECCCCCCEECCCCCEEEECCCCCCEEEHHHHHCCCCCCCCEEECCCCHHHCCCE VCICVVPADESHPPALEEINDYLKSQGMSVYKLPEKMRLVDVIPRNPIGKIMKKELRAQ EEEEEEECCCCCCCHHHHHHHHHHHCCCEEEECCCHHEEEEECCCCHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 8921902; 9384377; 8224884; 12221282 [H]