| Definition | Alcanivorax borkumensis SK2 chromosome, complete genome. |
|---|---|
| Accession | NC_008260 |
| Length | 3,120,143 |
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The map label for this gene is 110834618
Identifier: 110834618
GI number: 110834618
Start: 2003591
End: 2004661
Strand: Direct
Name: 110834618
Synonym: ABO_1757
Alternate gene names: NA
Gene position: 2003591-2004661 (Clockwise)
Preceding gene: 110834617
Following gene: 110834619
Centisome position: 64.21
GC content: 50.33
Gene sequence:
>1071_bases ATGGGGACGTTTAGGTATCTATGCTCAGCACTGCTGTTGGTTGCTGCAACCCATAGCAGTGCTCTGGCACTGACCGATAA ACAAAAAACACAACTCAAGCAGGCCCGACAATCCATGGGGCTTGCCGACGGTGAAATGCTGAAAAGGCACATATGCCTTT GGGATTTATCCGGGCGTTCCGGGCCGATATATAATGGCGCCACCAATTTACGCATAGATTTGTTGCGCTATAATATTGAT ATCAGTCTAGAAGCCTTCACTAATGAAGGTGTGTTGGTTGCCTCTTTGAAAAACGGTCACTGTGATGCCGCGCTAATGAG CGGGTTCCGGGCTCGTCATTTTAACCGTTTCACCGGCAGCATTGATGCACTGGGCGCCCTGCCTACACTGGAGCATGTAA ACGTTTTACTGCGCACCCTTGCTCACCCACAACTGGCCGAAAAAATGGCCAGCAATAAGTATCAGACCCTAGCCATTACG CCTGCTGGAGCGGCCTACCTTTTCGTCAATGATCGGGCGCTCAACTCCCTTTCAAAAGTAGCAGGAAAAAAAGTTGCGGT GCTAGATTTCGATCCTGGTCAATCCAAATTGGTTACCCATATCGGTGCCACCCCCGTCGCCAGCACTCTCGCTACTGCTC CCAGTCAATTCAATAATGGCAGTGTTGATGTGTTACCCGCCCCGTTGATTGCCTATCAAGCCCTAGAACTTTACAAAGGC ATGGAGCCCAATGGCGGCATCGTGGACTACCCCATCGTACAATTGACCGCGCAACTGATCGCTCATGCAGATCGCTTCCC CCCCGCCTTTTCGGCATTGATTCGTGAAATTGCAACAGACAGTTTCCAAGCGGTACAAAGCACGCTGAAAAAAGAAGCGG ATCGCATTCCCTCTCACTGGTGGATTTCACTTCCCGAAGACGAAAAGCAGAACTACAACAGCTTGATGCGCGATGCACGT ATCAAGCTACGCGATAGCGAATATTATGACCCCACCATGTTGAACATCATGAAACGTATTCGTTGCAGCCTAGAAGCGGG TCGCCCCGAATGCAGCCAAAGCATTGAGTAA
Upstream 100 bases:
>100_bases TGACTTTCGGAAAGCTTTGTACAATTGTCATACAACAGGTAAAACTTCGCCACACGGCGAAATGCTATAAACGCCCCCAT TGAATGACACAGGAATCGTC
Downstream 100 bases:
>100_bases TAAACAACATATCTTTTGCTCATCTCTCCCCCGAGCCGGCCAAGCTAATGAGCGACACTGCCAGTATAGCTGTAGACCAC AGCACCTTATGGCAACAACA
Product: hypothetical protein
Products: NA
Alternate protein names: RND Type Efflux Pump Involved In Aminoglycoside Resistance
Number of amino acids: Translated: 356; Mature: 355
Protein sequence:
>356_residues MGTFRYLCSALLLVAATHSSALALTDKQKTQLKQARQSMGLADGEMLKRHICLWDLSGRSGPIYNGATNLRIDLLRYNID ISLEAFTNEGVLVASLKNGHCDAALMSGFRARHFNRFTGSIDALGALPTLEHVNVLLRTLAHPQLAEKMASNKYQTLAIT PAGAAYLFVNDRALNSLSKVAGKKVAVLDFDPGQSKLVTHIGATPVASTLATAPSQFNNGSVDVLPAPLIAYQALELYKG MEPNGGIVDYPIVQLTAQLIAHADRFPPAFSALIREIATDSFQAVQSTLKKEADRIPSHWWISLPEDEKQNYNSLMRDAR IKLRDSEYYDPTMLNIMKRIRCSLEAGRPECSQSIE
Sequences:
>Translated_356_residues MGTFRYLCSALLLVAATHSSALALTDKQKTQLKQARQSMGLADGEMLKRHICLWDLSGRSGPIYNGATNLRIDLLRYNID ISLEAFTNEGVLVASLKNGHCDAALMSGFRARHFNRFTGSIDALGALPTLEHVNVLLRTLAHPQLAEKMASNKYQTLAIT PAGAAYLFVNDRALNSLSKVAGKKVAVLDFDPGQSKLVTHIGATPVASTLATAPSQFNNGSVDVLPAPLIAYQALELYKG MEPNGGIVDYPIVQLTAQLIAHADRFPPAFSALIREIATDSFQAVQSTLKKEADRIPSHWWISLPEDEKQNYNSLMRDAR IKLRDSEYYDPTMLNIMKRIRCSLEAGRPECSQSIE >Mature_355_residues GTFRYLCSALLLVAATHSSALALTDKQKTQLKQARQSMGLADGEMLKRHICLWDLSGRSGPIYNGATNLRIDLLRYNIDI SLEAFTNEGVLVASLKNGHCDAALMSGFRARHFNRFTGSIDALGALPTLEHVNVLLRTLAHPQLAEKMASNKYQTLAITP AGAAYLFVNDRALNSLSKVAGKKVAVLDFDPGQSKLVTHIGATPVASTLATAPSQFNNGSVDVLPAPLIAYQALELYKGM EPNGGIVDYPIVQLTAQLIAHADRFPPAFSALIREIATDSFQAVQSTLKKEADRIPSHWWISLPEDEKQNYNSLMRDARI KLRDSEYYDPTMLNIMKRIRCSLEAGRPECSQSIE
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 39086; Mature: 38955
Theoretical pI: Translated: 8.45; Mature: 8.45
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.4 %Cys (Translated Protein) 2.5 %Met (Translated Protein) 3.9 %Cys+Met (Translated Protein) 1.4 %Cys (Mature Protein) 2.3 %Met (Mature Protein) 3.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MGTFRYLCSALLLVAATHSSALALTDKQKTQLKQARQSMGLADGEMLKRHICLWDLSGRS CCHHHHHHHHHHHHHHCCCCEEEECCHHHHHHHHHHHHCCCCCHHHHHHHHEEEECCCCC GPIYNGATNLRIDLLRYNIDISLEAFTNEGVLVASLKNGHCDAALMSGFRARHFNRFTGS CCCCCCCCCEEEEEEEEEEEEEEEEECCCCEEEEECCCCCCCHHHHHHHHHHHHHHHCCC IDALGALPTLEHVNVLLRTLAHPQLAEKMASNKYQTLAITPAGAAYLFVNDRALNSLSKV HHHHCCCCHHHHHHHHHHHHCCHHHHHHHHCCCEEEEEEECCCEEEEEEECHHHHHHHHH AGKKVAVLDFDPGQSKLVTHIGATPVASTLATAPSQFNNGSVDVLPAPLIAYQALELYKG CCCEEEEEECCCCCHHHHHHCCCCHHHHHHHCCCCCCCCCCEEECCHHHHHHHHHHHHCC MEPNGGIVDYPIVQLTAQLIAHADRFPPAFSALIREIATDSFQAVQSTLKKEADRIPSHW CCCCCCEECCHHHHHHHHHHHHHCCCCHHHHHHHHHHHCHHHHHHHHHHHHHHHCCCCCE WISLPEDEKQNYNSLMRDARIKLRDSEYYDPTMLNIMKRIRCSLEAGRPECSQSIE EEECCCHHHHHHHHHHHHHHEEECCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCC >Mature Secondary Structure GTFRYLCSALLLVAATHSSALALTDKQKTQLKQARQSMGLADGEMLKRHICLWDLSGRS CHHHHHHHHHHHHHHCCCCEEEECCHHHHHHHHHHHHCCCCCHHHHHHHHEEEECCCCC GPIYNGATNLRIDLLRYNIDISLEAFTNEGVLVASLKNGHCDAALMSGFRARHFNRFTGS CCCCCCCCCEEEEEEEEEEEEEEEEECCCCEEEEECCCCCCCHHHHHHHHHHHHHHHCCC IDALGALPTLEHVNVLLRTLAHPQLAEKMASNKYQTLAITPAGAAYLFVNDRALNSLSKV HHHHCCCCHHHHHHHHHHHHCCHHHHHHHHCCCEEEEEEECCCEEEEEEECHHHHHHHHH AGKKVAVLDFDPGQSKLVTHIGATPVASTLATAPSQFNNGSVDVLPAPLIAYQALELYKG CCCEEEEEECCCCCHHHHHHCCCCHHHHHHHCCCCCCCCCCEEECCHHHHHHHHHHHHCC MEPNGGIVDYPIVQLTAQLIAHADRFPPAFSALIREIATDSFQAVQSTLKKEADRIPSHW CCCCCCEECCHHHHHHHHHHHHHCCCCHHHHHHHHHHHCHHHHHHHHHHHHHHHCCCCCE WISLPEDEKQNYNSLMRDARIKLRDSEYYDPTMLNIMKRIRCSLEAGRPECSQSIE EEECCCHHHHHHHHHHHHHHEEECCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA