| Definition | Alcanivorax borkumensis SK2 chromosome, complete genome. |
|---|---|
| Accession | NC_008260 |
| Length | 3,120,143 |
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The map label for this gene is 110834594
Identifier: 110834594
GI number: 110834594
Start: 1975308
End: 1976810
Strand: Direct
Name: 110834594
Synonym: ABO_1733
Alternate gene names: NA
Gene position: 1975308-1976810 (Clockwise)
Preceding gene: 110834593
Following gene: 110834595
Centisome position: 63.31
GC content: 53.76
Gene sequence:
>1503_bases GTGGCCTTATGCCGGAATAATTTCAGCGATTTTTTTGAAAAAAAAGGAATAAAACGGATGTTTAAGAGAAAAGCGTTGCT TACCTCGCTGTTGGCCACTTCCGTGCTCGTCGGCTGCGGTGGCGATAATGACAGTGACGATGAAACAGGCAGTGTAAAAA CTGCAGCGGTCTTGGAAAGCTATCCGGCGGCAGGGGTATTCTTATCCTATGATGTGCTGCGCAGCGACCTGATCGATGCC AAAACCCAACAAACATTTGAAGTACGTAACGGGGGTTTCGGCTCCGCAATGACAGCCCATCCCAGCAAGCCCACCCACTT CTACGCCCTTACCGACCGAGGTCCCAACGCCGTTTTCACCGGCGACTACGGCAAGGGAAAGAAGTTTCCAAGCCCGGACT ACACCCCGCGTATTGGTTTATTCGAGGTTATGCAGAACGGCCAGATAAACCACGTCAGCACCCTTTTGCTCAAAGACCGC GACGGGAATAACATCAGCGGCCTGCCCAATAGCGCCGCCCTGGGCGGCACTGGTGAGACCCCCTACGACGATAACGGCGA TCCCATCGTGATCGACAACACCAAGCCCTACAACGAGACCACCAACCCATTCAAACTGGATAATTACGGGCTCGATGGCG AGGGTCTCGTCGCGCTAAGCGATGGAACCTTCTGGGTAAGCGACGAGTATGGACCGCACATTGTCCACTACAATGCCAAC GGCGTAGAGATCGACCGTATCAACGCCTTTGCCGACGACACACGCACCAGCATCAACCTGCCAGCGGAGTTCGCTAACCG CCGCGCCAACCGCGGGATGGAAGGATTGGCGATCACTCCGGACGAAAAGACCCTCGTCGGCATTATGCAATCGACTCTGT ACAACCCGGACAGTAGCGTCAAAGATCTAAACATCACCCGTATCGTCACGGTTAACCTGGAGACAAAAGAGGTAGGGCAG TACCTGTACAAACAAGAAAAAACTCAAAATTCCAACTCAGAAATTGTCGCCCTAAGCGACACCGAATTTCTGGTCATCGA GCGTGACGGCAGCTTCCTTTATGGTGGCCCCGAGGGTGCAAGTGCTGTCACCCCCAGCGCCCAGAAGCATGTCTACCGCA TCGACCTGTCCAACGCCACCAACCTTGAGAAGGTAGCCGCCACCACAGACATAGCACAGGACGACCAGCTAGGCCTGACC ATCGACAGCAAGACCCTGGAGCAGGTGGTTCTTGCAGACGGCGACTGGAGTACGTTGACCAGCGCAGGCATTGTAGCGGC GGAAAAGAGCCTGGTCGTCGATATGGTCGCTGCAGTGAATTTTCCCCACGACAAGATGGAAGGTCTGTGGGTCATTGACG ACAACCACCTTGGTGTTCTGAATGATGACGATTTTGCCACTTGGTCCACTGACGGTGAGTTAGAGCAGAAAATGCTCGAC ACCAACACCATCGACGGAAACCGGCTGTACATCATTGGTGGATTAGATCTGACCAGTAATTAA
Upstream 100 bases:
>100_bases CCTCAGCGGGTGGGTTGATTCCGACTCCAAAACCAAGACCACCTTTGTTTACGAATATATCCCAACATTTTGTCAGTAGC GCGAGCACTGCTCGTGCCCC
Downstream 100 bases:
>100_bases GCCGGTATAAAGAGGCGGCGGGGACATCTGGCTTGATCTTGCGGTCTCGATATTCCTTGCGCCACTACACCACCTCGAAA GCATTATCTGGAGGATATCC
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 500; Mature: 499
Protein sequence:
>500_residues MALCRNNFSDFFEKKGIKRMFKRKALLTSLLATSVLVGCGGDNDSDDETGSVKTAAVLESYPAAGVFLSYDVLRSDLIDA KTQQTFEVRNGGFGSAMTAHPSKPTHFYALTDRGPNAVFTGDYGKGKKFPSPDYTPRIGLFEVMQNGQINHVSTLLLKDR DGNNISGLPNSAALGGTGETPYDDNGDPIVIDNTKPYNETTNPFKLDNYGLDGEGLVALSDGTFWVSDEYGPHIVHYNAN GVEIDRINAFADDTRTSINLPAEFANRRANRGMEGLAITPDEKTLVGIMQSTLYNPDSSVKDLNITRIVTVNLETKEVGQ YLYKQEKTQNSNSEIVALSDTEFLVIERDGSFLYGGPEGASAVTPSAQKHVYRIDLSNATNLEKVAATTDIAQDDQLGLT IDSKTLEQVVLADGDWSTLTSAGIVAAEKSLVVDMVAAVNFPHDKMEGLWVIDDNHLGVLNDDDFATWSTDGELEQKMLD TNTIDGNRLYIIGGLDLTSN
Sequences:
>Translated_500_residues MALCRNNFSDFFEKKGIKRMFKRKALLTSLLATSVLVGCGGDNDSDDETGSVKTAAVLESYPAAGVFLSYDVLRSDLIDA KTQQTFEVRNGGFGSAMTAHPSKPTHFYALTDRGPNAVFTGDYGKGKKFPSPDYTPRIGLFEVMQNGQINHVSTLLLKDR DGNNISGLPNSAALGGTGETPYDDNGDPIVIDNTKPYNETTNPFKLDNYGLDGEGLVALSDGTFWVSDEYGPHIVHYNAN GVEIDRINAFADDTRTSINLPAEFANRRANRGMEGLAITPDEKTLVGIMQSTLYNPDSSVKDLNITRIVTVNLETKEVGQ YLYKQEKTQNSNSEIVALSDTEFLVIERDGSFLYGGPEGASAVTPSAQKHVYRIDLSNATNLEKVAATTDIAQDDQLGLT IDSKTLEQVVLADGDWSTLTSAGIVAAEKSLVVDMVAAVNFPHDKMEGLWVIDDNHLGVLNDDDFATWSTDGELEQKMLD TNTIDGNRLYIIGGLDLTSN >Mature_499_residues ALCRNNFSDFFEKKGIKRMFKRKALLTSLLATSVLVGCGGDNDSDDETGSVKTAAVLESYPAAGVFLSYDVLRSDLIDAK TQQTFEVRNGGFGSAMTAHPSKPTHFYALTDRGPNAVFTGDYGKGKKFPSPDYTPRIGLFEVMQNGQINHVSTLLLKDRD GNNISGLPNSAALGGTGETPYDDNGDPIVIDNTKPYNETTNPFKLDNYGLDGEGLVALSDGTFWVSDEYGPHIVHYNANG VEIDRINAFADDTRTSINLPAEFANRRANRGMEGLAITPDEKTLVGIMQSTLYNPDSSVKDLNITRIVTVNLETKEVGQY LYKQEKTQNSNSEIVALSDTEFLVIERDGSFLYGGPEGASAVTPSAQKHVYRIDLSNATNLEKVAATTDIAQDDQLGLTI DSKTLEQVVLADGDWSTLTSAGIVAAEKSLVVDMVAAVNFPHDKMEGLWVIDDNHLGVLNDDDFATWSTDGELEQKMLDT NTIDGNRLYIIGGLDLTSN
Specific function: Unknown
COG id: COG4222
COG function: function code S; Uncharacterized protein conserved in bacteria
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 54348; Mature: 54217
Theoretical pI: Translated: 4.32; Mature: 4.32
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.4 %Cys (Translated Protein) 1.8 %Met (Translated Protein) 2.2 %Cys+Met (Translated Protein) 0.4 %Cys (Mature Protein) 1.6 %Met (Mature Protein) 2.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MALCRNNFSDFFEKKGIKRMFKRKALLTSLLATSVLVGCGGDNDSDDETGSVKTAAVLES CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEECCCCCCCCCCCCCEEHHHHHHC YPAAGVFLSYDVLRSDLIDAKTQQTFEVRNGGFGSAMTAHPSKPTHFYALTDRGPNAVFT CCCCCEEEEHHHHHHHHHCCCCCCEEEECCCCCCCCEECCCCCCEEEEEEECCCCCEEEE GDYGKGKKFPSPDYTPRIGLFEVMQNGQINHVSTLLLKDRDGNNISGLPNSAALGGTGET CCCCCCCCCCCCCCCCCCCHHHHHCCCCCCEEEEEEEECCCCCCCCCCCCCCCCCCCCCC PYDDNGDPIVIDNTKPYNETTNPFKLDNYGLDGEGLVALSDGTFWVSDEYGPHIVHYNAN CCCCCCCEEEECCCCCCCCCCCCEEECCCCCCCCCEEEEECCEEEEECCCCCEEEEECCC GVEIDRINAFADDTRTSINLPAEFANRRANRGMEGLAITPDEKTLVGIMQSTLYNPDSSV CEEEEEEECCCCCCCCEEECCHHHHHHHHHCCCCCEEECCCCHHHHHHHHHHHCCCCCCC KDLNITRIVTVNLETKEVGQYLYKQEKTQNSNSEIVALSDTEFLVIERDGSFLYGGPEGA CCEEEEEEEEEECCHHHHHHHHHHHHHCCCCCCCEEEEECCEEEEEECCCCEEECCCCCC SAVTPSAQKHVYRIDLSNATNLEKVAATTDIAQDDQLGLTIDSKTLEQVVLADGDWSTLT CCCCCCHHCEEEEEECCCCCCHHHHHHHHCCCCCCCEEEEECHHHHEEEEEECCCCHHHH SAGIVAAEKSLVVDMVAAVNFPHDKMEGLWVIDDNHLGVLNDDDFATWSTDGELEQKMLD HCCEEEHHHHHHHHHHHHCCCCHHHHCEEEEECCCCEEEECCCCCEEECCCCHHHHHHHC TNTIDGNRLYIIGGLDLTSN CCCCCCCEEEEEECCEECCC >Mature Secondary Structure ALCRNNFSDFFEKKGIKRMFKRKALLTSLLATSVLVGCGGDNDSDDETGSVKTAAVLES CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEECCCCCCCCCCCCCEEHHHHHHC YPAAGVFLSYDVLRSDLIDAKTQQTFEVRNGGFGSAMTAHPSKPTHFYALTDRGPNAVFT CCCCCEEEEHHHHHHHHHCCCCCCEEEECCCCCCCCEECCCCCCEEEEEEECCCCCEEEE GDYGKGKKFPSPDYTPRIGLFEVMQNGQINHVSTLLLKDRDGNNISGLPNSAALGGTGET CCCCCCCCCCCCCCCCCCCHHHHHCCCCCCEEEEEEEECCCCCCCCCCCCCCCCCCCCCC PYDDNGDPIVIDNTKPYNETTNPFKLDNYGLDGEGLVALSDGTFWVSDEYGPHIVHYNAN CCCCCCCEEEECCCCCCCCCCCCEEECCCCCCCCCEEEEECCEEEEECCCCCEEEEECCC GVEIDRINAFADDTRTSINLPAEFANRRANRGMEGLAITPDEKTLVGIMQSTLYNPDSSV CEEEEEEECCCCCCCCEEECCHHHHHHHHHCCCCCEEECCCCHHHHHHHHHHHCCCCCCC KDLNITRIVTVNLETKEVGQYLYKQEKTQNSNSEIVALSDTEFLVIERDGSFLYGGPEGA CCEEEEEEEEEECCHHHHHHHHHHHHHCCCCCCCEEEEECCEEEEEECCCCEEECCCCCC SAVTPSAQKHVYRIDLSNATNLEKVAATTDIAQDDQLGLTIDSKTLEQVVLADGDWSTLT CCCCCCHHCEEEEEECCCCCCHHHHHHHHCCCCCCCEEEEECHHHHEEEEEECCCCHHHH SAGIVAAEKSLVVDMVAAVNFPHDKMEGLWVIDDNHLGVLNDDDFATWSTDGELEQKMLD HCCEEEHHHHHHHHHHHHCCCCHHHHCEEEEECCCCEEEECCCCCEEECCCCHHHHHHHC TNTIDGNRLYIIGGLDLTSN CCCCCCCEEEEEECCEECCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA