| Definition | Alcanivorax borkumensis SK2 chromosome, complete genome. |
|---|---|
| Accession | NC_008260 |
| Length | 3,120,143 |
Click here to switch to the map view.
The map label for this gene is 110834519
Identifier: 110834519
GI number: 110834519
Start: 1896719
End: 1897672
Strand: Direct
Name: 110834519
Synonym: ABO_1658
Alternate gene names: NA
Gene position: 1896719-1897672 (Clockwise)
Preceding gene: 110834518
Following gene: 110834525
Centisome position: 60.79
GC content: 44.65
Gene sequence:
>954_bases ATGAGTAGAAGATCCACTCATGACGATCGAAATCGTCACTTCACCTTTTCCCAGAATGCTGACGAAACTGAAATCCAGGC TTTCCTTGATGGTGCCGCCCACATCGAAGCAGGAGTTCGTGATGAACTTATTGCTGATGCTCTTGACGATTTTGGCCCAA GTGACATTGGCGGGCCAGAAGAGCAGAGGATGGAAAGATTTGAAGCTGAAGATTTAGCATTAGACGAAGCAGCGGGGTCT ACCCTCGAAGAGATTCAGGATCGCAACGAAATACTTGGCGAGCTGTATCCTTTCAAACTGAACGGCAACACCCTAGAGTA TACGCCCTCACAAAATGGCGTTTACGAACTTCTATTGTCGATTTCTAACCTTCAAAATTCTGGAGAACAGGGTTCACTTT TTGAAAGAACAGCAACACAAGTCGCATGTAGAGTTTTAGGCCGCAACTCAAAAGCTTGGCATACTGGATGGCCGCGGTCC AACGGTCAGCCCAAAAGAATTAAGGAGCTTTATTCAAACATCAATAGCGAGACAGGTGAGTTTCACTGGGGACCAGAGGC TGGGTTTCCAGAAGACCCGCCTCCAAGAGACGAAAAGGACTGTGGAATTGATATTATTGTCCAAAGAAAACTGGATGAAT CAAGAATTGGCAATCTATTTTTGTTTGGACAATGTGCATGCGGCAATAACTGGGACTCTAAACTGGAAGAAGCAAACCCA TCGACAAAACTCGCCCGATACTTCAGAACAGTTACTTATGCCCCTCCAATTATCGCGATTTTCGTGCCTTTTTGCTTGTC ACAGTTTTGGATAAATGAAACTGCCAGACAAAAAGTTTTGGCATTCGATCGTCTTCGCATGGTTCAAATCTCTAACGACC TTGATGATGAAATTCCGGAGTGGCTGCATAGAGATAGAATTTTGGAGAAAGCCAAAGAAATAGCTTCGCAATAG
Upstream 100 bases:
>100_bases GAGGATATTTCATCTGAAATTGCAGAAAAACATAAGCCCGCAGCAAGCAAAGTTTCCAAACTAGCATCCTCTGTCTTCAA CAAATTACAAGAAATATCCG
Downstream 100 bases:
>100_bases ACACTAGAGGTAATTTAGCAACTCTTTACCGATAACATTAAATAAAGGTGGAGGAACAGCGTTGCCTACCACAGTGTATT TCATCCTCAAACTCGAATTC
Product: none
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 317; Mature: 316
Protein sequence:
>317_residues MSRRSTHDDRNRHFTFSQNADETEIQAFLDGAAHIEAGVRDELIADALDDFGPSDIGGPEEQRMERFEAEDLALDEAAGS TLEEIQDRNEILGELYPFKLNGNTLEYTPSQNGVYELLLSISNLQNSGEQGSLFERTATQVACRVLGRNSKAWHTGWPRS NGQPKRIKELYSNINSETGEFHWGPEAGFPEDPPPRDEKDCGIDIIVQRKLDESRIGNLFLFGQCACGNNWDSKLEEANP STKLARYFRTVTYAPPIIAIFVPFCLSQFWINETARQKVLAFDRLRMVQISNDLDDEIPEWLHRDRILEKAKEIASQ
Sequences:
>Translated_317_residues MSRRSTHDDRNRHFTFSQNADETEIQAFLDGAAHIEAGVRDELIADALDDFGPSDIGGPEEQRMERFEAEDLALDEAAGS TLEEIQDRNEILGELYPFKLNGNTLEYTPSQNGVYELLLSISNLQNSGEQGSLFERTATQVACRVLGRNSKAWHTGWPRS NGQPKRIKELYSNINSETGEFHWGPEAGFPEDPPPRDEKDCGIDIIVQRKLDESRIGNLFLFGQCACGNNWDSKLEEANP STKLARYFRTVTYAPPIIAIFVPFCLSQFWINETARQKVLAFDRLRMVQISNDLDDEIPEWLHRDRILEKAKEIASQ >Mature_316_residues SRRSTHDDRNRHFTFSQNADETEIQAFLDGAAHIEAGVRDELIADALDDFGPSDIGGPEEQRMERFEAEDLALDEAAGST LEEIQDRNEILGELYPFKLNGNTLEYTPSQNGVYELLLSISNLQNSGEQGSLFERTATQVACRVLGRNSKAWHTGWPRSN GQPKRIKELYSNINSETGEFHWGPEAGFPEDPPPRDEKDCGIDIIVQRKLDESRIGNLFLFGQCACGNNWDSKLEEANPS TKLARYFRTVTYAPPIIAIFVPFCLSQFWINETARQKVLAFDRLRMVQISNDLDDEIPEWLHRDRILEKAKEIASQ
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 36010; Mature: 35879
Theoretical pI: Translated: 4.45; Mature: 4.45
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.6 %Cys (Translated Protein) 0.9 %Met (Translated Protein) 2.5 %Cys+Met (Translated Protein) 1.6 %Cys (Mature Protein) 0.6 %Met (Mature Protein) 2.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSRRSTHDDRNRHFTFSQNADETEIQAFLDGAAHIEAGVRDELIADALDDFGPSDIGGPE CCCCCCCCCCCCEEEECCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCCH EQRMERFEAEDLALDEAAGSTLEEIQDRNEILGELYPFKLNGNTLEYTPSQNGVYELLLS HHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCEEECCCEEEECCCCCCHHHHHHH ISNLQNSGEQGSLFERTATQVACRVLGRNSKAWHTGWPRSNGQPKRIKELYSNINSETGE HHHHHCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCC FHWGPEAGFPEDPPPRDEKDCGIDIIVQRKLDESRIGNLFLFGQCACGNNWDSKLEEANP EECCCCCCCCCCCCCCCCCCCCEEEEEECCCCHHHCCCEEEEEEECCCCCHHHHHHHCCC STKLARYFRTVTYAPPIIAIFVPFCLSQFWINETARQKVLAFDRLRMVQISNDLDDEIPE HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHH WLHRDRILEKAKEIASQ HHHHHHHHHHHHHHHCC >Mature Secondary Structure SRRSTHDDRNRHFTFSQNADETEIQAFLDGAAHIEAGVRDELIADALDDFGPSDIGGPE CCCCCCCCCCCEEEECCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCCH EQRMERFEAEDLALDEAAGSTLEEIQDRNEILGELYPFKLNGNTLEYTPSQNGVYELLLS HHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCEEECCCEEEECCCCCCHHHHHHH ISNLQNSGEQGSLFERTATQVACRVLGRNSKAWHTGWPRSNGQPKRIKELYSNINSETGE HHHHHCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCC FHWGPEAGFPEDPPPRDEKDCGIDIIVQRKLDESRIGNLFLFGQCACGNNWDSKLEEANP EECCCCCCCCCCCCCCCCCCCCEEEEEECCCCHHHCCCEEEEEEECCCCCHHHHHHHCCC STKLARYFRTVTYAPPIIAIFVPFCLSQFWINETARQKVLAFDRLRMVQISNDLDDEIPE HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHH WLHRDRILEKAKEIASQ HHHHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA