| Definition | Alcanivorax borkumensis SK2 chromosome, complete genome. |
|---|---|
| Accession | NC_008260 |
| Length | 3,120,143 |
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The map label for this gene is 110834518
Identifier: 110834518
GI number: 110834518
Start: 1895602
End: 1896726
Strand: Direct
Name: 110834518
Synonym: ABO_1657
Alternate gene names: NA
Gene position: 1895602-1896726 (Clockwise)
Preceding gene: 110834515
Following gene: 110834519
Centisome position: 60.75
GC content: 41.33
Gene sequence:
>1125_bases ATGACAGCCGATGCAAAACGCGAGCATATTCCTCTAGAGCTGTTATTGCTCGACGAAAAAAACCCACGGTTTGGCAACCA TGGACAAAAACTAGTTAGTCAAACAGAAGTTCTCGATCATATTGTCAGCACTTTTAGTGTAGAAGATGTTTTAAGCTCTA TTGCTGTAAATGGTTTCTTCGAAGCTGAACCACTAGTTTGTGTTGGCCCTAACAAAAAGGGAGAATTTACCGTTGCCGAG GGCAACCGCAGACTATCGGCTTGCTTAATTTTAGCTGGCGATGAAAGAGCCAAAAACTGGAAACGAAAGACAGAAGAATA CCAGAAAATCCATGAAAAACATGGATCAAAAGCTTTCGATCCTGTGCCAGTAACTGTTTTCTCTGCAAACAATTCAGATA AAACCCTTCTTTCCTATCTGGGTGTGCGCCACATAGCCTCTTCTCAGCAGTGGGATTCCTATGCTAAAGCCGTCTGGATT GCAAACGTTATCCAAGAGGGAGAAATTGATGTAAAAACAGTGGCAGAGATGATCGGCGACAAACATCAAACAGTTTCAAG ATTACTTGAAGGCTACTATTTCATAAGACAGCTAGAAGATGAAAATCAATTTATCCCCTCAAACTCTCAAAGAAAAGGAC GAGGCAGCAACACAACTTATCCATTTTCATGGGTCTACACTCTTCTTGGGTATGCATCTGTTAGAGATTTCCTTGGATTG AATGACTCCAAACCAAGAGAAAACCCCGTTGAGCGTGAGAAAATTAATAATGCATCCTTGCTTGTCTCGGCAATGTTTGG AGACAGATCAAAAGGCAAAGATTCTGCGCTGAACGATTCGAGACAACTCAGTACTCTCGCGAAAGTGGTTTCTGATCCAG AAAAAATTTCCTTGCTTAGAAATGGCAAAAAGATTGATGAAATTATCAAAGCAACCCAGCCTATTGATGAAAGGTTAGGA GATGGGCTGCTGGAAGCGCAGTCATCTTTAAGAGACATATCCTCTAGGCTTATGGAGGAGGATATTTCATCTGAAATTGC AGAAAAACATAAGCCCGCAGCAAGCAAAGTTTCCAAACTAGCATCCTCTGTCTTCAACAAATTACAAGAAATATCCGATG AGTAG
Upstream 100 bases:
>100_bases GGGCTGGGAAACAGGAACCCCAACTACCCAACGGGGTTTTTTATTTGCCATACTTTAATCTATCATCACTCAACGACGTG CTAACTACTGGCAGATTCTT
Downstream 100 bases:
>100_bases AAGATCCACTCATGACGATCGAAATCGTCACTTCACCTTTTCCCAGAATGCTGACGAAACTGAAATCCAGGCTTTCCTTG ATGGTGCCGCCCACATCGAA
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 374; Mature: 373
Protein sequence:
>374_residues MTADAKREHIPLELLLLDEKNPRFGNHGQKLVSQTEVLDHIVSTFSVEDVLSSIAVNGFFEAEPLVCVGPNKKGEFTVAE GNRRLSACLILAGDERAKNWKRKTEEYQKIHEKHGSKAFDPVPVTVFSANNSDKTLLSYLGVRHIASSQQWDSYAKAVWI ANVIQEGEIDVKTVAEMIGDKHQTVSRLLEGYYFIRQLEDENQFIPSNSQRKGRGSNTTYPFSWVYTLLGYASVRDFLGL NDSKPRENPVEREKINNASLLVSAMFGDRSKGKDSALNDSRQLSTLAKVVSDPEKISLLRNGKKIDEIIKATQPIDERLG DGLLEAQSSLRDISSRLMEEDISSEIAEKHKPAASKVSKLASSVFNKLQEISDE
Sequences:
>Translated_374_residues MTADAKREHIPLELLLLDEKNPRFGNHGQKLVSQTEVLDHIVSTFSVEDVLSSIAVNGFFEAEPLVCVGPNKKGEFTVAE GNRRLSACLILAGDERAKNWKRKTEEYQKIHEKHGSKAFDPVPVTVFSANNSDKTLLSYLGVRHIASSQQWDSYAKAVWI ANVIQEGEIDVKTVAEMIGDKHQTVSRLLEGYYFIRQLEDENQFIPSNSQRKGRGSNTTYPFSWVYTLLGYASVRDFLGL NDSKPRENPVEREKINNASLLVSAMFGDRSKGKDSALNDSRQLSTLAKVVSDPEKISLLRNGKKIDEIIKATQPIDERLG DGLLEAQSSLRDISSRLMEEDISSEIAEKHKPAASKVSKLASSVFNKLQEISDE >Mature_373_residues TADAKREHIPLELLLLDEKNPRFGNHGQKLVSQTEVLDHIVSTFSVEDVLSSIAVNGFFEAEPLVCVGPNKKGEFTVAEG NRRLSACLILAGDERAKNWKRKTEEYQKIHEKHGSKAFDPVPVTVFSANNSDKTLLSYLGVRHIASSQQWDSYAKAVWIA NVIQEGEIDVKTVAEMIGDKHQTVSRLLEGYYFIRQLEDENQFIPSNSQRKGRGSNTTYPFSWVYTLLGYASVRDFLGLN DSKPRENPVEREKINNASLLVSAMFGDRSKGKDSALNDSRQLSTLAKVVSDPEKISLLRNGKKIDEIIKATQPIDERLGD GLLEAQSSLRDISSRLMEEDISSEIAEKHKPAASKVSKLASSVFNKLQEISDE
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 41781; Mature: 41649
Theoretical pI: Translated: 6.33; Mature: 6.33
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 1.1 %Met (Translated Protein) 1.6 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 0.8 %Met (Mature Protein) 1.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTADAKREHIPLELLLLDEKNPRFGNHGQKLVSQTEVLDHIVSTFSVEDVLSSIAVNGFF CCCCCCCCCCCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC EAEPLVCVGPNKKGEFTVAEGNRRLSACLILAGDERAKNWKRKTEEYQKIHEKHGSKAFD CCCCEEEECCCCCCCEEEECCCCEEEEEEEEECCHHHHHHHHHHHHHHHHHHHCCCCCCC PVPVTVFSANNSDKTLLSYLGVRHIASSQQWDSYAKAVWIANVIQEGEIDVKTVAEMIGD CCCEEEEECCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCC KHQTVSRLLEGYYFIRQLEDENQFIPSNSQRKGRGSNTTYPFSWVYTLLGYASVRDFLGL HHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCC NDSKPRENPVEREKINNASLLVSAMFGDRSKGKDSALNDSRQLSTLAKVVSDPEKISLLR CCCCCCCCCCHHHHCCCHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHCCHHHHHHHH NGKKIDEIIKATQPIDERLGDGLLEAQSSLRDISSRLMEEDISSEIAEKHKPAASKVSKL CCHHHHHHHHHCCCHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHH ASSVFNKLQEISDE HHHHHHHHHHHCCC >Mature Secondary Structure TADAKREHIPLELLLLDEKNPRFGNHGQKLVSQTEVLDHIVSTFSVEDVLSSIAVNGFF CCCCCCCCCCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC EAEPLVCVGPNKKGEFTVAEGNRRLSACLILAGDERAKNWKRKTEEYQKIHEKHGSKAFD CCCCEEEECCCCCCCEEEECCCCEEEEEEEEECCHHHHHHHHHHHHHHHHHHHCCCCCCC PVPVTVFSANNSDKTLLSYLGVRHIASSQQWDSYAKAVWIANVIQEGEIDVKTVAEMIGD CCCEEEEECCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCC KHQTVSRLLEGYYFIRQLEDENQFIPSNSQRKGRGSNTTYPFSWVYTLLGYASVRDFLGL HHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCC NDSKPRENPVEREKINNASLLVSAMFGDRSKGKDSALNDSRQLSTLAKVVSDPEKISLLR CCCCCCCCCCHHHHCCCHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHCCHHHHHHHH NGKKIDEIIKATQPIDERLGDGLLEAQSSLRDISSRLMEEDISSEIAEKHKPAASKVSKL CCHHHHHHHHHCCCHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHH ASSVFNKLQEISDE HHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA