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The map label for this gene is rnfD

Identifier: 110834473

GI number: 110834473

Start: 1846223

End: 1847251

Strand: Direct

Name: rnfD

Synonym: ABO_1612

Alternate gene names: 110834473

Gene position: 1846223-1847251 (Clockwise)

Preceding gene: 110834472

Following gene: 110834474

Centisome position: 59.17

GC content: 59.86

Gene sequence:

>1029_bases
ATGAGCCTGATTACCTCAACGTCACCCCATGCCACGGTGAAAAACAACACCGGCGCGTTTATGCGCCAGGTGATCTACGC
CACCCTGCCCGGCCTTGCCGTGCTGACTTGGCAGTTTGGCTGGGGGTCGGTGATCAACGTGCTTTGGGCGGTGATTGTTG
CGCTGGTCAGTGAAGCGTTATTCCTAAAAGCCCGTGGCCGCAATATCGCCTTCTACCTGAAAGACTACAGTGCGGTGGTG
ACTGCGGTACTGCTTGGTTTAGCGTTGCCGCCCACCGCCCCCTGGTGGCTCACCCTGGTGGGTGTCAGCTTTGCCATCAT
CGTAGCCAAGCAGCTATACGGCGGCCTGGGCATGAACCCCTTCAACCCGGCCATGGTCGGCTATGTGCTGCTGCTCATTT
CCTTCCCGGTGGCCATGACTCAATGGCTGGCGCCCGGCGAACCGTTATCGTTGCTACAAAGCTGGCAGCTGTTTACCGGG
CAACTGCCGGTAGACGGGCTCAGCGGTGCCACCCCACTAGACACCTTCCGCACCGTCCACAGTGCCGGGGCAAGCAGCGA
GATAGAGCTGGCCAGCCACAGTATTCTGCATGGCCAGTTTGCCGGGCTGGGTTGGGAATGGGTCAACCTGGCATTCCTGC
TCGGCGGCCTGTATCTCATTAGCCGCAAAATCATCACCTGGCACATTCCTGCGGGCTTTCTCGCAGGCCTAGGCTTACCG
GCTCTGCTTGCCTGGTTGATTGATCCGGTCCGCTTTGCCGACCCGCTCTTTCAGCTGTTTTCTGGTGGCGCCATGCTGGG
GGCATTCTTTATCGCCACCGACCCGGTCAGTGCCGCCACCAGCCGCATGGGCCGGCTGGTTTATGCCTTGCTGATCGGCG
TGCTGATCTGGGTGATTCGCACCTTTGGCGGCTACCCGGACGCGGTGGCATTTTCGGTATTGCTGCTCAACCTGTCCGCC
CCCTTCATTGATTACTACACCCAGCCACGGACCTACGGGCATAAGTCATCCAACCGAGGGACCAACTGA

Upstream 100 bases:

>100_bases
ATGCAGGCTCCCAGGCGCTGACCTTCTGCAGAAGCGTCGCTGGCAGCGCGATTCTCGCGCCCTCAATATCGGCGCGTTCG
GCCACACATGGGATATATCA

Downstream 100 bases:

>100_bases
TGATGCGCTATGCCATCACCAAGAACGCGGTGATCCTCGGGCTGTTTGCCATTGGCACAGCCGCCACCCTGGCCATTACC
AATGAAGCCACGTTAGATCA

Product: electron transport complex protein RnfD

Products: NA

Alternate protein names: Nitrogen fixation protein rnfD

Number of amino acids: Translated: 342; Mature: 341

Protein sequence:

>342_residues
MSLITSTSPHATVKNNTGAFMRQVIYATLPGLAVLTWQFGWGSVINVLWAVIVALVSEALFLKARGRNIAFYLKDYSAVV
TAVLLGLALPPTAPWWLTLVGVSFAIIVAKQLYGGLGMNPFNPAMVGYVLLLISFPVAMTQWLAPGEPLSLLQSWQLFTG
QLPVDGLSGATPLDTFRTVHSAGASSEIELASHSILHGQFAGLGWEWVNLAFLLGGLYLISRKIITWHIPAGFLAGLGLP
ALLAWLIDPVRFADPLFQLFSGGAMLGAFFIATDPVSAATSRMGRLVYALLIGVLIWVIRTFGGYPDAVAFSVLLLNLSA
PFIDYYTQPRTYGHKSSNRGTN

Sequences:

>Translated_342_residues
MSLITSTSPHATVKNNTGAFMRQVIYATLPGLAVLTWQFGWGSVINVLWAVIVALVSEALFLKARGRNIAFYLKDYSAVV
TAVLLGLALPPTAPWWLTLVGVSFAIIVAKQLYGGLGMNPFNPAMVGYVLLLISFPVAMTQWLAPGEPLSLLQSWQLFTG
QLPVDGLSGATPLDTFRTVHSAGASSEIELASHSILHGQFAGLGWEWVNLAFLLGGLYLISRKIITWHIPAGFLAGLGLP
ALLAWLIDPVRFADPLFQLFSGGAMLGAFFIATDPVSAATSRMGRLVYALLIGVLIWVIRTFGGYPDAVAFSVLLLNLSA
PFIDYYTQPRTYGHKSSNRGTN
>Mature_341_residues
SLITSTSPHATVKNNTGAFMRQVIYATLPGLAVLTWQFGWGSVINVLWAVIVALVSEALFLKARGRNIAFYLKDYSAVVT
AVLLGLALPPTAPWWLTLVGVSFAIIVAKQLYGGLGMNPFNPAMVGYVLLLISFPVAMTQWLAPGEPLSLLQSWQLFTGQ
LPVDGLSGATPLDTFRTVHSAGASSEIELASHSILHGQFAGLGWEWVNLAFLLGGLYLISRKIITWHIPAGFLAGLGLPA
LLAWLIDPVRFADPLFQLFSGGAMLGAFFIATDPVSAATSRMGRLVYALLIGVLIWVIRTFGGYPDAVAFSVLLLNLSAP
FIDYYTQPRTYGHKSSNRGTN

Specific function: Required for nitrogen fixation. May be part of a membrane complex functioning as an intermediate in the electron transport to nitrogenase

COG id: COG4658

COG function: function code C; Predicted NADH:ubiquinone oxidoreductase, subunit RnfD

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein (Potential)

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the nqrB/rnfD family

Homologues:

Organism=Escherichia coli, GI1787917, Length=352, Percent_Identity=50, Blast_Score=339, Evalue=1e-94,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RNFD_ALCBS (Q0VP38)

Other databases:

- EMBL:   AM286690
- RefSeq:   YP_693332.1
- STRING:   Q0VP38
- GeneID:   4212124
- GenomeReviews:   AM286690_GR
- KEGG:   abo:ABO_1612
- NMPDR:   fig|393595.12.peg.1615
- eggNOG:   COG4658
- HOGENOM:   HBG454412
- OMA:   NPAMVAY
- PhylomeDB:   Q0VP38
- BioCyc:   ABOR393595:ABO_1612-MONOMER
- GO:   GO:0006810
- HAMAP:   MF_00462
- InterPro:   IPR011303
- InterPro:   IPR004338
- TIGRFAMs:   TIGR01946

Pfam domain/function: PF03116 NQR2_RnfD_RnfE

EC number: NA

Molecular weight: Translated: 36885; Mature: 36754

Theoretical pI: Translated: 9.61; Mature: 9.61

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

HASH(0x13105f00)-; HASH(0x12380230)-; HASH(0x1308ac5c)-; HASH(0x1306449c)-; HASH(0x130613f0)-; HASH(0x12fdb9f0)-; HASH(0x1308b300)-; HASH(0x13087378)-;

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
2.0 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
1.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSLITSTSPHATVKNNTGAFMRQVIYATLPGLAVLTWQFGWGSVINVLWAVIVALVSEAL
CCCCCCCCCCCEECCCHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHHHHHHHH
FLKARGRNIAFYLKDYSAVVTAVLLGLALPPTAPWWLTLVGVSFAIIVAKQLYGGLGMNP
HHHCCCCEEEEEEHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCC
FNPAMVGYVLLLISFPVAMTQWLAPGEPLSLLQSWQLFTGQLPVDGLSGATPLDTFRTVH
CCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHH
SAGASSEIELASHSILHGQFAGLGWEWVNLAFLLGGLYLISRKIITWHIPAGFLAGLGLP
HCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHEEECCHHHHHHCCHH
ALLAWLIDPVRFADPLFQLFSGGAMLGAFFIATDPVSAATSRMGRLVYALLIGVLIWVIR
HHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
TFGGYPDAVAFSVLLLNLSAPFIDYYTQPRTYGHKSSNRGTN
HHCCCCHHHHHHHHHHHHCCCHHHHHCCCCCCCCCCCCCCCH
>Mature Secondary Structure 
SLITSTSPHATVKNNTGAFMRQVIYATLPGLAVLTWQFGWGSVINVLWAVIVALVSEAL
CCCCCCCCCCEECCCHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHHHHHHHH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HHCCCCHHHHHHHHHHHHCCCHHHHHCCCCCCCCCCCCCCCH

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA