| Definition | Alcanivorax borkumensis SK2 chromosome, complete genome. |
|---|---|
| Accession | NC_008260 |
| Length | 3,120,143 |
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The map label for this gene is purN [H]
Identifier: 110834435
GI number: 110834435
Start: 1797895
End: 1798536
Strand: Direct
Name: purN [H]
Synonym: ABO_1574
Alternate gene names: 110834435
Gene position: 1797895-1798536 (Clockwise)
Preceding gene: 110834434
Following gene: 110834436
Centisome position: 57.62
GC content: 55.3
Gene sequence:
>642_bases GTGACTCACCGGCTAGCGGTATTGATTAGCGGCTCAGGCACCAACCTGCAAGCAATCATGGATGCCCGTGAACACGGCAG TCTCGATGTCGAGATTGCCGTGGTATTCTCCAATCGAGCCAACGCGGCAGGCTTGGAGCGAGCGTCCCAGGCGGGAATTC CCACCGCCACTCTGGATCACCGTGACTACCCGAGCAGGGAAGAGTTCGACCAGGCCATGATCGACCTGCTCACCCCGTAT GCTCCAGACACCGTAGTGCTGGCCGGCTTTATGCGTATTCTCTCTAGTGTTTTTGTACGCCATTACGCCGGGCGCTTAAT CAACATCCATCCCTCGCTGCTGCCCAAGTATCGGGGGTTAAATACGCATGCTCGTGCCCTGGAAGCCGGCGATAGCGAAC ATGGCTGCTCCATTCATTTTGTCACCGAAGAACTGGATGGCGGCCCTCTGATTGCACAGGCCCCCATTTCGGTACAAACG AACGATACCGTTGATTCCCTGTCCAAACGTGTACAACAACGCGAACACCGGCTCTATCCTCAGGTGTTGCAATGGCGTGC ACAAAATAGACTGGAACTGACCTACAACGGAGTGTTACTGGATGGCAAGCCCCTCCCTACACAGGGTTATATCCTCACTT AA
Upstream 100 bases:
>100_bases CTCTCGCCCTGCTGGAAGCAGAAGGTGAAAGCGCCTTCTTGATCGGTGAAATTCAGGCAGGCGACGGCCAGCCCGACGTC GTTCTGGACGGGCTGTCAGC
Downstream 100 bases:
>100_bases CCCACTTATTCTCGCCAGTATTATGCTGGTGAGCCTGACGTTCTCTTCCGTCGCCAGCGCAGAGCAAACGCCGTCCCCCT TTAATTTGGATTACCGCCTG
Product: phosphoribosylglycinamide formyltransferase
Products: NA
Alternate protein names: 5'-phosphoribosylglycinamide transformylase; GAR transformylase; GART [H]
Number of amino acids: Translated: 213; Mature: 212
Protein sequence:
>213_residues MTHRLAVLISGSGTNLQAIMDAREHGSLDVEIAVVFSNRANAAGLERASQAGIPTATLDHRDYPSREEFDQAMIDLLTPY APDTVVLAGFMRILSSVFVRHYAGRLINIHPSLLPKYRGLNTHARALEAGDSEHGCSIHFVTEELDGGPLIAQAPISVQT NDTVDSLSKRVQQREHRLYPQVLQWRAQNRLELTYNGVLLDGKPLPTQGYILT
Sequences:
>Translated_213_residues MTHRLAVLISGSGTNLQAIMDAREHGSLDVEIAVVFSNRANAAGLERASQAGIPTATLDHRDYPSREEFDQAMIDLLTPY APDTVVLAGFMRILSSVFVRHYAGRLINIHPSLLPKYRGLNTHARALEAGDSEHGCSIHFVTEELDGGPLIAQAPISVQT NDTVDSLSKRVQQREHRLYPQVLQWRAQNRLELTYNGVLLDGKPLPTQGYILT >Mature_212_residues THRLAVLISGSGTNLQAIMDAREHGSLDVEIAVVFSNRANAAGLERASQAGIPTATLDHRDYPSREEFDQAMIDLLTPYA PDTVVLAGFMRILSSVFVRHYAGRLINIHPSLLPKYRGLNTHARALEAGDSEHGCSIHFVTEELDGGPLIAQAPISVQTN DTVDSLSKRVQQREHRLYPQVLQWRAQNRLELTYNGVLLDGKPLPTQGYILT
Specific function: De novo purine biosynthesis; third step. [C]
COG id: COG0299
COG function: function code F; Folate-dependent phosphoribosylglycinamide formyltransferase PurN
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the GART family [H]
Homologues:
Organism=Homo sapiens, GI4503915, Length=194, Percent_Identity=46.9072164948454, Blast_Score=195, Evalue=3e-50, Organism=Homo sapiens, GI209869995, Length=194, Percent_Identity=46.9072164948454, Blast_Score=195, Evalue=3e-50, Organism=Homo sapiens, GI209869993, Length=194, Percent_Identity=46.9072164948454, Blast_Score=195, Evalue=3e-50, Organism=Escherichia coli, GI1788846, Length=206, Percent_Identity=57.7669902912621, Blast_Score=241, Evalue=2e-65, Organism=Escherichia coli, GI1787483, Length=166, Percent_Identity=34.3373493975904, Blast_Score=97, Evalue=1e-21, Organism=Caenorhabditis elegans, GI17567511, Length=189, Percent_Identity=37.037037037037, Blast_Score=142, Evalue=9e-35, Organism=Saccharomyces cerevisiae, GI6320616, Length=197, Percent_Identity=32.994923857868, Blast_Score=97, Evalue=2e-21, Organism=Drosophila melanogaster, GI24582400, Length=182, Percent_Identity=47.2527472527472, Blast_Score=183, Evalue=8e-47,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR002376 - InterPro: IPR001555 - InterPro: IPR004607 [H]
Pfam domain/function: PF00551 Formyl_trans_N [H]
EC number: =2.1.2.2 [H]
Molecular weight: Translated: 23519; Mature: 23388
Theoretical pI: Translated: 6.60; Mature: 6.60
Prosite motif: PS00373 GART
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 1.9 %Met (Translated Protein) 2.3 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 1.4 %Met (Mature Protein) 1.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTHRLAVLISGSGTNLQAIMDAREHGSLDVEIAVVFSNRANAAGLERASQAGIPTATLDH CCCEEEEEEECCCCCHHHHHHHHHCCCEEEEEEEEECCCCCCHHHHHHHHCCCCEEECCC RDYPSREEFDQAMIDLLTPYAPDTVVLAGFMRILSSVFVRHYAGRLINIHPSLLPKYRGL CCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEECHHHHHHHCCC NTHARALEAGDSEHGCSIHFVTEELDGGPLIAQAPISVQTNDTVDSLSKRVQQREHRLYP CHHHHHHHCCCCCCCCEEEEEEEECCCCCEEEECCCEEECCCCHHHHHHHHHHHHHHHHH QVLQWRAQNRLELTYNGVLLDGKPLPTQGYILT HHHHHHCCCCEEEEECCEEECCCCCCCCCEEEC >Mature Secondary Structure THRLAVLISGSGTNLQAIMDAREHGSLDVEIAVVFSNRANAAGLERASQAGIPTATLDH CCEEEEEEECCCCCHHHHHHHHHCCCEEEEEEEEECCCCCCHHHHHHHHCCCCEEECCC RDYPSREEFDQAMIDLLTPYAPDTVVLAGFMRILSSVFVRHYAGRLINIHPSLLPKYRGL CCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEECHHHHHHHCCC NTHARALEAGDSEHGCSIHFVTEELDGGPLIAQAPISVQTNDTVDSLSKRVQQREHRLYP CHHHHHHHCCCCCCCCEEEEEEEECCCCCEEEECCCEEECCCCHHHHHHHHHHHHHHHHH QVLQWRAQNRLELTYNGVLLDGKPLPTQGYILT HHHHHHCCCCEEEEECCEEECCCCCCCCCEEEC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 3301838; 9205837; 9278503; 10954745; 2204419; 1522592; 1631098; 9698564; 10606510 [H]