| Definition | Alcanivorax borkumensis SK2 chromosome, complete genome. |
|---|---|
| Accession | NC_008260 |
| Length | 3,120,143 |
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The map label for this gene is 110834420
Identifier: 110834420
GI number: 110834420
Start: 1780839
End: 1781525
Strand: Direct
Name: 110834420
Synonym: ABO_1559
Alternate gene names: NA
Gene position: 1780839-1781525 (Clockwise)
Preceding gene: 110834418
Following gene: 110834426
Centisome position: 57.08
GC content: 55.02
Gene sequence:
>687_bases ATGACTCAGGCGAACCGGCAACACCCAGGCGGAAACAATGTTGTTTCCTTCCCTCCACGCCGCAAAGCGGCCAAGCCCCC TATTTTGCGTTTATCTCCGGAATACGATGGCATCGAGCTGCTATATGCCAACGACCACCACCCCGACAAATTATTCTCTT TAAAAGTGCTCGCTTGGGCGCGACTGGCCAATGGTGACACCGTAGCCATGGTTCCCTGGCTCAAGGAGCCGGTCACCGCC ATGGCGCTGGCTGATCCACTGAATGGACGCTGGGAAGGTTACCGACTACCTGGCAGCGATTATTTGTTTGTCAATGCGCC TGAACATAAGGTTAAAGAGATGGATGCCGCCCTGTCGTTTTTCGGCAAGCCCCAGCCCGGCGAGCAAGCTATTCAGGAAA TCCCTGACACCATCGGCACCCATGCGGTGTTTTCCGACGATGATTTCCACACCATTAGTCTCATGGAGGTGGTCAGCTGG AAGCTGTTTGCTGATGGCACCCTGTCAGCCATGGTGGCACAAGAAAACGACCCGGTTGAGACACCGATTTTGCCCGGTGC AGAATGCCTGACCACAGCACAGTCGCTACCGGCCTTTCGCTATTTCTTCCAGCACGGCATAGCCAATAAATTGAAGGAGA GAGACCCGGAAGCGCTGGCGGCAGTGGCTATTCTGGCGAAAAGCTGA
Upstream 100 bases:
>100_bases GCATGGCACCGCATGACAGGCTAACGTGAATTAACGGGCCGTGCCGAGCGATTTACTGAGATCGCGCTCACGCCCTAAGG TAACGTACCGGGAGAAGCCC
Downstream 100 bases:
>100_bases ACACTGCCGCGCGGTATTCGATGAAATGATGAGCGCTAATTGAACGCGTTGCAGCTAGCGTAGCCGTGTTCAATTAGCCC TCTTTCTTCTTGATCCAATA
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 228; Mature: 227
Protein sequence:
>228_residues MTQANRQHPGGNNVVSFPPRRKAAKPPILRLSPEYDGIELLYANDHHPDKLFSLKVLAWARLANGDTVAMVPWLKEPVTA MALADPLNGRWEGYRLPGSDYLFVNAPEHKVKEMDAALSFFGKPQPGEQAIQEIPDTIGTHAVFSDDDFHTISLMEVVSW KLFADGTLSAMVAQENDPVETPILPGAECLTTAQSLPAFRYFFQHGIANKLKERDPEALAAVAILAKS
Sequences:
>Translated_228_residues MTQANRQHPGGNNVVSFPPRRKAAKPPILRLSPEYDGIELLYANDHHPDKLFSLKVLAWARLANGDTVAMVPWLKEPVTA MALADPLNGRWEGYRLPGSDYLFVNAPEHKVKEMDAALSFFGKPQPGEQAIQEIPDTIGTHAVFSDDDFHTISLMEVVSW KLFADGTLSAMVAQENDPVETPILPGAECLTTAQSLPAFRYFFQHGIANKLKERDPEALAAVAILAKS >Mature_227_residues TQANRQHPGGNNVVSFPPRRKAAKPPILRLSPEYDGIELLYANDHHPDKLFSLKVLAWARLANGDTVAMVPWLKEPVTAM ALADPLNGRWEGYRLPGSDYLFVNAPEHKVKEMDAALSFFGKPQPGEQAIQEIPDTIGTHAVFSDDDFHTISLMEVVSWK LFADGTLSAMVAQENDPVETPILPGAECLTTAQSLPAFRYFFQHGIANKLKERDPEALAAVAILAKS
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 25115; Mature: 24984
Theoretical pI: Translated: 5.58; Mature: 5.58
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.4 %Cys (Translated Protein) 2.6 %Met (Translated Protein) 3.1 %Cys+Met (Translated Protein) 0.4 %Cys (Mature Protein) 2.2 %Met (Mature Protein) 2.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTQANRQHPGGNNVVSFPPRRKAAKPPILRLSPEYDGIELLYANDHHPDKLFSLKVLAWA CCCCCCCCCCCCCEEECCCCCCCCCCCEEEECCCCCCEEEEEECCCCCCHHHHHHHHHHH RLANGDTVAMVPWLKEPVTAMALADPLNGRWEGYRLPGSDYLFVNAPEHKVKEMDAALSF HHCCCCEEEECCCCCCCHHHHHHHCCCCCCCCCEECCCCCEEEEECCHHHHHHHHHHHHH FGKPQPGEQAIQEIPDTIGTHAVFSDDDFHTISLMEVVSWKLFADGTLSAMVAQENDPVE CCCCCCHHHHHHHHHHHHCCCEEECCCCCCHHHHHHHHHHHEECCCCEEEEEECCCCCCC TPILPGAECLTTAQSLPAFRYFFQHGIANKLKERDPEALAAVAILAKS CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCC >Mature Secondary Structure TQANRQHPGGNNVVSFPPRRKAAKPPILRLSPEYDGIELLYANDHHPDKLFSLKVLAWA CCCCCCCCCCCCEEECCCCCCCCCCCEEEECCCCCCEEEEEECCCCCCHHHHHHHHHHH RLANGDTVAMVPWLKEPVTAMALADPLNGRWEGYRLPGSDYLFVNAPEHKVKEMDAALSF HHCCCCEEEECCCCCCCHHHHHHHCCCCCCCCCEECCCCCEEEEECCHHHHHHHHHHHHH FGKPQPGEQAIQEIPDTIGTHAVFSDDDFHTISLMEVVSWKLFADGTLSAMVAQENDPVE CCCCCCHHHHHHHHHHHHCCCEEECCCCCCHHHHHHHHHHHEECCCCEEEEEECCCCCCC TPILPGAECLTTAQSLPAFRYFFQHGIANKLKERDPEALAAVAILAKS CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA