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The map label for this gene is yhjC [H]

Identifier: 110834214

GI number: 110834214

Start: 1533968

End: 1534873

Strand: Direct

Name: yhjC [H]

Synonym: ABO_1353

Alternate gene names: 110834214

Gene position: 1533968-1534873 (Clockwise)

Preceding gene: 110834199

Following gene: 110834215

Centisome position: 49.16

GC content: 52.43

Gene sequence:

>906_bases
ATGGACACAGAAGGCATTAAGCTCTTTGTTCTCGCCGCAGAAAAGCTCAATATCAGTGCCGCAGGCCGCGAGCTGGGCAT
GCCTGCGGCGGTGGCCAGCGCCAAGCTGGCAAAGCTCGAAAAGACCGTTGGTGCCGATTTATTAAAGCGCACCACACGCA
AAGTGGCACTGTCCGTAGAGGGCGCAGACTTCCTGCCCTATGCCCGCGAAATTCTGGCTCAAGAGAACGCAGCACTGGCG
GCGCTGGGATACGGTAACGAAACGGTTTCCGGCAACCTGCGATTCACCGCACCCAGCACCTTCGCACAGCAGTTCATTGT
GCCGCTAATCCCTGATTTTCTGGCACTGTACCCGGGAATTAGCCTGGATTTGCGGCTGTCCGACATGGAGCTGGACCTGA
TACAGGGCAGCTTTGATTTGGCATTACGCAATGCGGTTTTGCCAGAAAGTAATCTACACGCACGTAAGCTCGCAGAAGAT
CAAAGAATACTTTGCGCTTCATCAGATTACCTCGATAGCCATGGCATACCCGTTAGGCCAGATGATCTGCTGAATCACCA
ATTGATAGCGTTCAAATCTGCATCCACCATCAAATTGATCGAAGCCGGTGGGAAGAGTGGTGAGTTTAATACACGCGGCC
CTGGACACCGACTAACTATAGATGATGGTCTCAGCTATAAAATCGCCACGCACTGCGGTGCCGGTATTGCGATACATTCG
TTGTGGAGTGTTCATAAGGAGCTGGCCGACGGCAGCCTGGTGCAGGTGCTACCAGAATATCGAATGGATGCAGAACCCGC
ATTGTGGTTGGTATATCCCAAATCCAACGTGCTAACGGCTAAGGTGAGGGTGTTTATCGATTTCTTGATAGAACGCATTG
GCCTGAATCCGCCGTGGCTGAATTAA

Upstream 100 bases:

>100_bases
TGGGGATGTTTGCTGTTACGTTGGAGCCACTTTATTATTTCATTTTCTGGCAAAAAATGGGCGATATTAGGTTTCAGTAT
TCGGATTATGGATATAAACA

Downstream 100 bases:

>100_bases
AGTAAGCGCATAAACAACTACGCATAATGTATATTATGTTAATATGGACACCATGCATGTCTATGTCCACTATGTACAAT
ATGGGGGTGTGGTTGAGGTT

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 301; Mature: 301

Protein sequence:

>301_residues
MDTEGIKLFVLAAEKLNISAAGRELGMPAAVASAKLAKLEKTVGADLLKRTTRKVALSVEGADFLPYAREILAQENAALA
ALGYGNETVSGNLRFTAPSTFAQQFIVPLIPDFLALYPGISLDLRLSDMELDLIQGSFDLALRNAVLPESNLHARKLAED
QRILCASSDYLDSHGIPVRPDDLLNHQLIAFKSASTIKLIEAGGKSGEFNTRGPGHRLTIDDGLSYKIATHCGAGIAIHS
LWSVHKELADGSLVQVLPEYRMDAEPALWLVYPKSNVLTAKVRVFIDFLIERIGLNPPWLN

Sequences:

>Translated_301_residues
MDTEGIKLFVLAAEKLNISAAGRELGMPAAVASAKLAKLEKTVGADLLKRTTRKVALSVEGADFLPYAREILAQENAALA
ALGYGNETVSGNLRFTAPSTFAQQFIVPLIPDFLALYPGISLDLRLSDMELDLIQGSFDLALRNAVLPESNLHARKLAED
QRILCASSDYLDSHGIPVRPDDLLNHQLIAFKSASTIKLIEAGGKSGEFNTRGPGHRLTIDDGLSYKIATHCGAGIAIHS
LWSVHKELADGSLVQVLPEYRMDAEPALWLVYPKSNVLTAKVRVFIDFLIERIGLNPPWLN
>Mature_301_residues
MDTEGIKLFVLAAEKLNISAAGRELGMPAAVASAKLAKLEKTVGADLLKRTTRKVALSVEGADFLPYAREILAQENAALA
ALGYGNETVSGNLRFTAPSTFAQQFIVPLIPDFLALYPGISLDLRLSDMELDLIQGSFDLALRNAVLPESNLHARKLAED
QRILCASSDYLDSHGIPVRPDDLLNHQLIAFKSASTIKLIEAGGKSGEFNTRGPGHRLTIDDGLSYKIATHCGAGIAIHS
LWSVHKELADGSLVQVLPEYRMDAEPALWLVYPKSNVLTAKVRVFIDFLIERIGLNPPWLN

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI145693193, Length=298, Percent_Identity=30.8724832214765, Blast_Score=144, Evalue=9e-36,
Organism=Escherichia coli, GI1786401, Length=295, Percent_Identity=30.8474576271186, Blast_Score=141, Evalue=6e-35,
Organism=Escherichia coli, GI87081978, Length=299, Percent_Identity=32.1070234113712, Blast_Score=134, Evalue=7e-33,
Organism=Escherichia coli, GI1789639, Length=288, Percent_Identity=30.2083333333333, Blast_Score=121, Evalue=6e-29,
Organism=Escherichia coli, GI1789440, Length=275, Percent_Identity=30.5454545454545, Blast_Score=115, Evalue=4e-27,
Organism=Escherichia coli, GI1787128, Length=290, Percent_Identity=25.8620689655172, Blast_Score=104, Evalue=6e-24,
Organism=Escherichia coli, GI1787589, Length=289, Percent_Identity=26.2975778546713, Blast_Score=80, Evalue=2e-16,
Organism=Escherichia coli, GI1788706, Length=171, Percent_Identity=26.9005847953216, Blast_Score=67, Evalue=1e-12,
Organism=Escherichia coli, GI1787879, Length=164, Percent_Identity=31.7073170731707, Blast_Score=67, Evalue=1e-12,
Organism=Escherichia coli, GI1789173, Length=297, Percent_Identity=23.9057239057239, Blast_Score=62, Evalue=4e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 32710; Mature: 32710

Theoretical pI: Translated: 6.17; Mature: 6.17

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
2.0 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
2.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDTEGIKLFVLAAEKLNISAAGRELGMPAAVASAKLAKLEKTVGADLLKRTTRKVALSVE
CCCCCEEEEEEEEECCCEECCCHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEC
GADFLPYAREILAQENAALAALGYGNETVSGNLRFTAPSTFAQQFIVPLIPDFLALYPGI
CCCCCHHHHHHHHCCCCEEEEEECCCCEECCCEEEECCHHHHHHHHHHHHHHHHHHCCCC
SLDLRLSDMELDLIQGSFDLALRNAVLPESNLHARKLAEDQRILCASSDYLDSHGIPVRP
EEEEEEECCEEEEECCCHHHHHHHHCCCCCCCHHHHHCCCCEEEEECCCCCCCCCCCCCC
DDLLNHQLIAFKSASTIKLIEAGGKSGEFNTRGPGHRLTIDDGLSYKIATHCGAGIAIHS
HHHHCCEEEEEECCCEEEEEECCCCCCCCCCCCCCCEEEEECCCCEEEEHHCCCCHHHHH
LWSVHKELADGSLVQVLPEYRMDAEPALWLVYPKSNVLTAKVRVFIDFLIERIGLNPPWL
HHHHHHHHCCCHHHHHHHHHCCCCCCEEEEEECCCCEEHHHHHHHHHHHHHHHCCCCCCC
N
C
>Mature Secondary Structure
MDTEGIKLFVLAAEKLNISAAGRELGMPAAVASAKLAKLEKTVGADLLKRTTRKVALSVE
CCCCCEEEEEEEEECCCEECCCHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEC
GADFLPYAREILAQENAALAALGYGNETVSGNLRFTAPSTFAQQFIVPLIPDFLALYPGI
CCCCCHHHHHHHHCCCCEEEEEECCCCEECCCEEEECCHHHHHHHHHHHHHHHHHHCCCC
SLDLRLSDMELDLIQGSFDLALRNAVLPESNLHARKLAEDQRILCASSDYLDSHGIPVRP
EEEEEEECCEEEEECCCHHHHHHHHCCCCCCCHHHHHCCCCEEEEECCCCCCCCCCCCCC
DDLLNHQLIAFKSASTIKLIEAGGKSGEFNTRGPGHRLTIDDGLSYKIATHCGAGIAIHS
HHHHCCEEEEEECCCEEEEEECCCCCCCCCCCCCCCEEEEECCCCEEEEHHCCCCHHHHH
LWSVHKELADGSLVQVLPEYRMDAEPALWLVYPKSNVLTAKVRVFIDFLIERIGLNPPWL
HHHHHHHHCCCHHHHHHHHHCCCCCCEEEEEECCCCEEHHHHHHHHHHHHHHHCCCCCCC
N
C

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8041620; 9278503 [H]