| Definition | Alcanivorax borkumensis SK2 chromosome, complete genome. |
|---|---|
| Accession | NC_008260 |
| Length | 3,120,143 |
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The map label for this gene is yceA [C]
Identifier: 110834114
GI number: 110834114
Start: 1428153
End: 1429106
Strand: Direct
Name: yceA [C]
Synonym: ABO_1253
Alternate gene names: 110834114
Gene position: 1428153-1429106 (Clockwise)
Preceding gene: 110834113
Following gene: 110834115
Centisome position: 45.77
GC content: 53.88
Gene sequence:
>954_bases GTGAGTACCCAGCATCGGGTGGAAACCCCACATAGTATTGTGGTGGCGGCGTTGTACAAATTTGTTCGGCTGTCTGGGTT CGAGCAATTGCAACAGCCGCTGCTGGATCTGATGCACGCTAACGATGTGCGCGGCACTTTGCTTCTGGCCAATGAGGGCA TTAACGGCACAGTTTCCGGCCCCCGTGCCGGGGTGGATGCGGTGTTGAACTGGCTCAAGAGCGACGAACGCCTGGCGACG CTGGAGCATAAGGAGTCTTTCCACGACGAGCATCCATTTTTGCGTACCAAGGTGAAGCTAAAGAAAGAGATCGTCACCAT GGGGGTGGAAGGTATTGACCCTACCCGCACCGTGGGCACCTACCTGTCACCGCAGGAATGGAATGAAATTATTGCTGATC CGGACACGGTGTTGATCGACACCCGCAATGATTATGAAGTGGAAGTCGGTACCTTCAAAGGCGCCATTAACCCCGAGACG CGCACCTTCCGGGAGTTCCCAGAATACGTTAAGCAAACCTTGGATCCGCAAAAGCACAAAAAAGTGGCCATGTTTTGTAC CGGCGGCATACGTTGTGAGAAGTCCACGGCTTATCTGAAAGAGCAAGGCTTTGATGAGGTGTACCACCTGAAAGGTGGCA TTCTCAAATATCTGGAAGAGATGCCTAAGGAAGACTCTCTATGGGAAGGAGAGTGTTTTGTCTTTGATGAGCGAGTGACG GTGGATCATGACCTGAATCCTGGCGAATTTGATCAATGTCACGCCTGTCGTCGACCTATTAGCGATGAGGACAAGCGCTC AGCGCAGTTCCAGCTGGGGGTTTCCTGCCCGAAATGTTTTGATGAATCCTCACCGGAGCAAAAACAGCGCTTTGCGGAGC GGCAGAAGCAGATTGAGCTAGCCCGCGCTCGTGGCCGCCAGCACCGCGGCCAGAACCCCCGCAAATCCTCCTGA
Upstream 100 bases:
>100_bases AGGCCAAGGGGGGCGAGATTTTGGCGTCACCGGACTGCCTGGGTGGCAGTAAACATGACCCGCAATTCAGCAAGGGAGAA TCAACGTTGGGAGAGAAGTC
Downstream 100 bases:
>100_bases CAGGGCCATCGTGCTGACTTAGACTGGACGATTCCCGGTGTATCGTTCCAGCGTAGCCTCAATATAGTCGCGGTGTAGCC CATGCGGATTTTGGTTGTTG
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 317; Mature: 316
Protein sequence:
>317_residues MSTQHRVETPHSIVVAALYKFVRLSGFEQLQQPLLDLMHANDVRGTLLLANEGINGTVSGPRAGVDAVLNWLKSDERLAT LEHKESFHDEHPFLRTKVKLKKEIVTMGVEGIDPTRTVGTYLSPQEWNEIIADPDTVLIDTRNDYEVEVGTFKGAINPET RTFREFPEYVKQTLDPQKHKKVAMFCTGGIRCEKSTAYLKEQGFDEVYHLKGGILKYLEEMPKEDSLWEGECFVFDERVT VDHDLNPGEFDQCHACRRPISDEDKRSAQFQLGVSCPKCFDESSPEQKQRFAERQKQIELARARGRQHRGQNPRKSS
Sequences:
>Translated_317_residues MSTQHRVETPHSIVVAALYKFVRLSGFEQLQQPLLDLMHANDVRGTLLLANEGINGTVSGPRAGVDAVLNWLKSDERLAT LEHKESFHDEHPFLRTKVKLKKEIVTMGVEGIDPTRTVGTYLSPQEWNEIIADPDTVLIDTRNDYEVEVGTFKGAINPET RTFREFPEYVKQTLDPQKHKKVAMFCTGGIRCEKSTAYLKEQGFDEVYHLKGGILKYLEEMPKEDSLWEGECFVFDERVT VDHDLNPGEFDQCHACRRPISDEDKRSAQFQLGVSCPKCFDESSPEQKQRFAERQKQIELARARGRQHRGQNPRKSS >Mature_316_residues STQHRVETPHSIVVAALYKFVRLSGFEQLQQPLLDLMHANDVRGTLLLANEGINGTVSGPRAGVDAVLNWLKSDERLATL EHKESFHDEHPFLRTKVKLKKEIVTMGVEGIDPTRTVGTYLSPQEWNEIIADPDTVLIDTRNDYEVEVGTFKGAINPETR TFREFPEYVKQTLDPQKHKKVAMFCTGGIRCEKSTAYLKEQGFDEVYHLKGGILKYLEEMPKEDSLWEGECFVFDERVTV DHDLNPGEFDQCHACRRPISDEDKRSAQFQLGVSCPKCFDESSPEQKQRFAERQKQIELARARGRQHRGQNPRKSS
Specific function: Unknown. [C]
COG id: COG1054
COG function: function code R; Predicted sulfurtransferase
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 rhodanese domain [H]
Homologues:
Organism=Homo sapiens, GI111038120, Length=260, Percent_Identity=36.1538461538462, Blast_Score=147, Evalue=1e-35, Organism=Escherichia coli, GI1787294, Length=273, Percent_Identity=34.0659340659341, Blast_Score=146, Evalue=2e-36,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR001763 - InterPro: IPR020936 [H]
Pfam domain/function: PF00581 Rhodanese [H]
EC number: NA
Molecular weight: Translated: 36263; Mature: 36132
Theoretical pI: Translated: 6.30; Mature: 6.30
Prosite motif: PS50206 RHODANESE_3
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.2 %Cys (Translated Protein) 1.6 %Met (Translated Protein) 3.8 %Cys+Met (Translated Protein) 2.2 %Cys (Mature Protein) 1.3 %Met (Mature Protein) 3.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSTQHRVETPHSIVVAALYKFVRLSGFEQLQQPLLDLMHANDVRGTLLLANEGINGTVSG CCCCCCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCCC PRAGVDAVLNWLKSDERLATLEHKESFHDEHPFLRTKVKLKKEIVTMGVEGIDPTRTVGT CCCCHHHHHHHHCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCCCCHHHHHC YLSPQEWNEIIADPDTVLIDTRNDYEVEVGTFKGAINPETRTFREFPEYVKQTLDPQKHK CCCHHHHHHHHCCCCEEEEECCCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHCCHHHHC KVAMFCTGGIRCEKSTAYLKEQGFDEVYHLKGGILKYLEEMPKEDSLWEGECFVFDERVT EEEEEECCCEEECCHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEECEEE VDHDLNPGEFDQCHACRRPISDEDKRSAQFQLGVSCPKCFDESSPEQKQRFAERQKQIEL ECCCCCCCCCHHHHHHHCCCCCCCCCCCEEEECCCCHHHCCCCCHHHHHHHHHHHHHHHH ARARGRQHRGQNPRKSS HHHHHHHHCCCCCCCCC >Mature Secondary Structure STQHRVETPHSIVVAALYKFVRLSGFEQLQQPLLDLMHANDVRGTLLLANEGINGTVSG CCCCCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCCC PRAGVDAVLNWLKSDERLATLEHKESFHDEHPFLRTKVKLKKEIVTMGVEGIDPTRTVGT CCCCHHHHHHHHCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCCCCHHHHHC YLSPQEWNEIIADPDTVLIDTRNDYEVEVGTFKGAINPETRTFREFPEYVKQTLDPQKHK CCCHHHHHHHHCCCCEEEEECCCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHCCHHHHC KVAMFCTGGIRCEKSTAYLKEQGFDEVYHLKGGILKYLEEMPKEDSLWEGECFVFDERVT EEEEEECCCEEECCHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEECEEE VDHDLNPGEFDQCHACRRPISDEDKRSAQFQLGVSCPKCFDESSPEQKQRFAERQKQIEL ECCCCCCCCCHHHHHHHCCCCCCCCCCCEEEECCCCHHHCCCCCHHHHHHHHHHHHHHHH ARARGRQHRGQNPRKSS HHHHHHHHCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA