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The map label for this gene is ligT [C]

Identifier: 110834060

GI number: 110834060

Start: 1361558

End: 1362073

Strand: Direct

Name: ligT [C]

Synonym: ABO_1199

Alternate gene names: 110834060

Gene position: 1361558-1362073 (Clockwise)

Preceding gene: 110834054

Following gene: 110834061

Centisome position: 43.64

GC content: 55.62

Gene sequence:

>516_bases
ATGCGTTGTTTTATCGGGATTCCGGTTGTCCGACCGCTTGCAGATCAATGCAGGATGTTGTCCCAGGGCATGGGGCTTGC
TACCCCCGCGGCAAATCTACACCTTACCCTCGCGTTTTTGGGTGAACAGAGCGCATCGGATCTGAATGGCTTAAAAGGAT
CGGTGTCAGCACTGGCCGATAAGCATGCGTCGTTTGCACAGCTCTTCGATCGCTGTGAGCCGTTTCCCCGTGATCAAGGG
CCGTTTATTGCGTTAACAGGGAAGGCCAGTTCGCCGCTTCAGCAGCTCCACGCTGGCCTGGAGGAGTGTCTTGAATTTCA
CGGCTTGCCGTTGGAGAGCAGGTCGTTTCGGCCACATATTACTCTGGCTAGGCCTGGGGCTGCGGTGACGTCTTTTCAGA
CTATGGGTGAGTGGGTGTTGCCGGTTAACGCGCTGTGGCTATATCGTAGTGAGTGGGCTGAGCCGTTGCCGACGTATGAG
TGTCTGGCACGATTTGCCTTGAAAACTGCGCTGTAG

Upstream 100 bases:

>100_bases
CGCAGTTATCGGGCGGCATTCTATCGTTGTCCCTGTCTGGACGCTATGCCAGTAGCGTGAAGGGCAAAAGGGCAAAAGGG
TAAAAGGAGTAAAATGATAT

Downstream 100 bases:

>100_bases
TTATTCGCTGGGCGGCCAAGGGCGAGCAATGTCTGTTTCAGCCACACGCCTTGTTATTTTATCTTGGCTGCAGATGAGGC
GCTTGGCTCCAGCAACTTGA

Product: hypothetical protein

Products: NA

Alternate protein names: 2 5' RNA Ligase

Number of amino acids: Translated: 171; Mature: 171

Protein sequence:

>171_residues
MRCFIGIPVVRPLADQCRMLSQGMGLATPAANLHLTLAFLGEQSASDLNGLKGSVSALADKHASFAQLFDRCEPFPRDQG
PFIALTGKASSPLQQLHAGLEECLEFHGLPLESRSFRPHITLARPGAAVTSFQTMGEWVLPVNALWLYRSEWAEPLPTYE
CLARFALKTAL

Sequences:

>Translated_171_residues
MRCFIGIPVVRPLADQCRMLSQGMGLATPAANLHLTLAFLGEQSASDLNGLKGSVSALADKHASFAQLFDRCEPFPRDQG
PFIALTGKASSPLQQLHAGLEECLEFHGLPLESRSFRPHITLARPGAAVTSFQTMGEWVLPVNALWLYRSEWAEPLPTYE
CLARFALKTAL
>Mature_171_residues
MRCFIGIPVVRPLADQCRMLSQGMGLATPAANLHLTLAFLGEQSASDLNGLKGSVSALADKHASFAQLFDRCEPFPRDQG
PFIALTGKASSPLQQLHAGLEECLEFHGLPLESRSFRPHITLARPGAAVTSFQTMGEWVLPVNALWLYRSEWAEPLPTYE
CLARFALKTAL

Specific function: Specifically Ligates tRNA Half-Molecules Containing Nucleoside Base Modifications And Shows A Preference Among Different tRNA Species. Acts In The Absence Of ATP To Form A 2'-5' Phosphodiester Linkage. [C]

COG id: COG1514

COG function: function code J; 2'-5' RNA ligase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: 6.5.1.- [C]

Molecular weight: Translated: 18693; Mature: 18693

Theoretical pI: Translated: 7.02; Mature: 7.02

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.9 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
5.3 %Cys+Met (Translated Protein)
2.9 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
5.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRCFIGIPVVRPLADQCRMLSQGMGLATPAANLHLTLAFLGEQSASDLNGLKGSVSALAD
CEEEECCCCHHHHHHHHHHHHCCCCCCCCCCCCEEEEEEECCCCCHHHHCCCHHHHHHHH
KHASFAQLFDRCEPFPRDQGPFIALTGKASSPLQQLHAGLEECLEFHGLPLESRSFRPHI
CCHHHHHHHHHCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCEE
TLARPGAAVTSFQTMGEWVLPVNALWLYRSEWAEPLPTYECLARFALKTAL
EEECCCCHHHHHHHHCCHHCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHCC
>Mature Secondary Structure
MRCFIGIPVVRPLADQCRMLSQGMGLATPAANLHLTLAFLGEQSASDLNGLKGSVSALAD
CEEEECCCCHHHHHHHHHHHHCCCCCCCCCCCCEEEEEEECCCCCHHHHCCCHHHHHHHH
KHASFAQLFDRCEPFPRDQGPFIALTGKASSPLQQLHAGLEECLEFHGLPLESRSFRPHI
CCHHHHHHHHHCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCEE
TLARPGAAVTSFQTMGEWVLPVNALWLYRSEWAEPLPTYECLARFALKTAL
EEECCCCHHHHHHHHCCHHCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA