Definition Alcanivorax borkumensis SK2 chromosome, complete genome.
Accession NC_008260
Length 3,120,143

Click here to switch to the map view.

The map label for this gene is yhiQ [C]

Identifier: 110833992

GI number: 110833992

Start: 1282880

End: 1283623

Strand: Direct

Name: yhiQ [C]

Synonym: ABO_1131

Alternate gene names: 110833992

Gene position: 1282880-1283623 (Clockwise)

Preceding gene: 110833991

Following gene: 110833994

Centisome position: 41.12

GC content: 57.8

Gene sequence:

>744_bases
ATGAGGCAGAGTGAGTGGTTGGACACTGTGCTTGGGTTATTACCCGGTTGCCCGAAAGGTCTTCCGGGTTTCTGGGTTGA
AAATGAAGCCCAGGCCAGTGGGCAGGCGCTTGAGCTGGTGCTTGGCTGGCATGATGATTGCCTGGGCCTGTGGCGTCCCG
GTGGCAAGCAAACGCCGCTGACGGTCAGTTTCTGTGACGGCAAGCAGGGGTACCGACTCACCCCCGAGCGGGTGCGCCAT
GAGCGTCTGATTAAGGCGCTGGGCAAGCCCAAAGACGATCGGATCCGGGTGCTTGACGCCACGGCGGGGCTTGGCAGGGA
TGCGGCCCTGATGGCACAGGCAGGGTTTCAGGTGATGCTGGCAGAACGTTCGCCGATTCTTCACGCGATGCTTGCTGATG
GTCTGCAAAGGGCTCCTGCCAGCCTTGTTGCGAACATGCAGTTGCTGGCGTGCGCAGACAGCAAAATTGCTGAGCCATCT
GCTCTCCACGCGGTGTACCTAGATCCCATGTTTCCCGCTCGGGAAAAAAGTGCGGCGGTTAAAAAAGACCTGCAGTGGTT
GCAGCGGCTTTGTCCTTACCCGGATGAAGTTGAGGAACAGCAATTACTGGATTGGGCGCGTGCCCTTGGCGCTTCTCGGG
TGGTTGTCAAACGCCCGGTAAAGGCGGGTTTTTTAGCTGGCGTAACACCGTCTTTTAGTCAAAAGGGCAAGGCGGTACGT
TTTGATATTTATACCTGCCCCTGA

Upstream 100 bases:

>100_bases
TGACCATTGTATTCTTCATTCGCTTGTTGGAGCGCGTTGGCATGCTGCCGTTTGTGGTCTATCGGTTGATACTCGGTGTG
GCCCTGTTGTTCTGGTTGGC

Downstream 100 bases:

>100_bases
GCACAACCCTACAGGTAATGACGGTCGATTCTTTTGGGAAGACACCGGCCACCCACAAGAGATGGCCGGAGATGTTTAAT
TTGCTTCAGATGACGCAGTA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 247; Mature: 247

Protein sequence:

>247_residues
MRQSEWLDTVLGLLPGCPKGLPGFWVENEAQASGQALELVLGWHDDCLGLWRPGGKQTPLTVSFCDGKQGYRLTPERVRH
ERLIKALGKPKDDRIRVLDATAGLGRDAALMAQAGFQVMLAERSPILHAMLADGLQRAPASLVANMQLLACADSKIAEPS
ALHAVYLDPMFPAREKSAAVKKDLQWLQRLCPYPDEVEEQQLLDWARALGASRVVVKRPVKAGFLAGVTPSFSQKGKAVR
FDIYTCP

Sequences:

>Translated_247_residues
MRQSEWLDTVLGLLPGCPKGLPGFWVENEAQASGQALELVLGWHDDCLGLWRPGGKQTPLTVSFCDGKQGYRLTPERVRH
ERLIKALGKPKDDRIRVLDATAGLGRDAALMAQAGFQVMLAERSPILHAMLADGLQRAPASLVANMQLLACADSKIAEPS
ALHAVYLDPMFPAREKSAAVKKDLQWLQRLCPYPDEVEEQQLLDWARALGASRVVVKRPVKAGFLAGVTPSFSQKGKAVR
FDIYTCP
>Mature_247_residues
MRQSEWLDTVLGLLPGCPKGLPGFWVENEAQASGQALELVLGWHDDCLGLWRPGGKQTPLTVSFCDGKQGYRLTPERVRH
ERLIKALGKPKDDRIRVLDATAGLGRDAALMAQAGFQVMLAERSPILHAMLADGLQRAPASLVANMQLLACADSKIAEPS
ALHAVYLDPMFPAREKSAAVKKDLQWLQRLCPYPDEVEEQQLLDWARALGASRVVVKRPVKAGFLAGVTPSFSQKGKAVR
FDIYTCP

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0341 family

Homologues:

Organism=Escherichia coli, GI1789912, Length=193, Percent_Identity=40.4145077720207, Blast_Score=103, Evalue=8e-24,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): Y1131_ALCBS (Q0VQG9)

Other databases:

- EMBL:   AM286690
- RefSeq:   YP_692851.1
- ProteinModelPortal:   Q0VQG9
- SMR:   Q0VQG9
- STRING:   Q0VQG9
- GeneID:   4212418
- GenomeReviews:   AM286690_GR
- KEGG:   abo:ABO_1131
- NMPDR:   fig|393595.12.peg.1141
- eggNOG:   COG0500
- HOGENOM:   HBG563235
- OMA:   ISHIENI
- PhylomeDB:   Q0VQG9
- BioCyc:   ABOR393595:ABO_1131-MONOMER
- HAMAP:   MF_01523
- InterPro:   IPR007536

Pfam domain/function: PF04445 DUF548

EC number: NA

Molecular weight: Translated: 27096; Mature: 27096

Theoretical pI: Translated: 8.60; Mature: 8.60

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.4 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
4.9 %Cys+Met (Translated Protein)
2.4 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
4.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRQSEWLDTVLGLLPGCPKGLPGFWVENEAQASGQALELVLGWHDDCLGLWRPGGKQTPL
CCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCHHHHCCCCCCCCCE
TVSFCDGKQGYRLTPERVRHERLIKALGKPKDDRIRVLDATAGLGRDAALMAQAGFQVML
EEEEECCCCCCCCCHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCHHHHHHCCCEEEE
AERSPILHAMLADGLQRAPASLVANMQLLACADSKIAEPSALHAVYLDPMFPAREKSAAV
ECCCCHHHHHHHHHHHHCCHHHHHCCHHEEECCCCCCCCCCEEEEEECCCCCCHHHHHHH
KKDLQWLQRLCPYPDEVEEQQLLDWARALGASRVVVKRPVKAGFLAGVTPSFSQKGKAVR
HHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCEEEECCCHHHHHCCCCCCHHCCCCEEE
FDIYTCP
EEEEECC
>Mature Secondary Structure
MRQSEWLDTVLGLLPGCPKGLPGFWVENEAQASGQALELVLGWHDDCLGLWRPGGKQTPL
CCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCHHHHCCCCCCCCCE
TVSFCDGKQGYRLTPERVRHERLIKALGKPKDDRIRVLDATAGLGRDAALMAQAGFQVML
EEEEECCCCCCCCCHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCHHHHHHCCCEEEE
AERSPILHAMLADGLQRAPASLVANMQLLACADSKIAEPSALHAVYLDPMFPAREKSAAV
ECCCCHHHHHHHHHHHHCCHHHHHCCHHEEECCCCCCCCCCEEEEEECCCCCCHHHHHHH
KKDLQWLQRLCPYPDEVEEQQLLDWARALGASRVVVKRPVKAGFLAGVTPSFSQKGKAVR
HHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCEEEECCCHHHHHCCCCCCHHCCCCEEE
FDIYTCP
EEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA