| Definition | Alcanivorax borkumensis SK2 chromosome, complete genome. |
|---|---|
| Accession | NC_008260 |
| Length | 3,120,143 |
Click here to switch to the map view.
The map label for this gene is 110833966
Identifier: 110833966
GI number: 110833966
Start: 1255754
End: 1257148
Strand: Direct
Name: 110833966
Synonym: ABO_1105
Alternate gene names: NA
Gene position: 1255754-1257148 (Clockwise)
Preceding gene: 110833965
Following gene: 110833967
Centisome position: 40.25
GC content: 54.27
Gene sequence:
>1395_bases ATGCGTTTTCTGATGACTTGGCATCGCCGCGCAGCCTGGTTAGTCGCGGTGCCATTGATGTTATGGTTACTGAGCGGGCT GTTACATCCCTTGATGGCGTGGGTGTTGAAGCCGCCTATGGAGGGCCACCAAATTGTTAGGCCTTTGCTGCCTAGCGCGG CTGAGGTCAGGCCGGTTGATGTTTTGCTGCAGGAGAAGGACATTGATGCGGTCACGAATGTTCAGCTGCAACAAATCGAC GGAGGTTGGCAATACCGGGTAGTGGAGGCGGGACATACTCAACCGCGTTACTTTCATGCCGATAGCAGTGAAGAAATCGC CCATGGAGATCGTTTGCACGCCATCTGGCTGGCCAGAATGCTGGTGGATGATCCTGATGCGGGCATTCTTTCTGCCATAC CGTTAGAGCAGTTCAGCAATGAATACCGTGAAGTTAACCGTCTGTTGCCCGTTTGGCGGGTGGCACTAGAGCGTGAGGAC GGATTAACACTGTACTTGGATACGGAGCAGCAGCGGCTAGCCAGTGCGGCTACCTGGGGTCGGCGACAAGCGCTCAAGGC ATTTTCTTGGTTCCATAGCTGGCACTGGTTGCCGCACGCCGCGCGTACTCCCGTGGTGCTGCTGTTTTCCGTTCCCTTGC TATTGATGTCACTGGGGGGGCTGATACTGCTCGTTCGGCGCTGGCGCCATTTAAACAAGGGCAATGGCGTGCGTCGTTGG CATCGCTGGTTGACTCTGGTCGGTGGGCTCTCTTTGTTTGGCTTTGCCAGCAGTGGTGTACATGTGGCGATTGATAAATT GAATCCGCCGCAATGGATAGATTTTCGGGATGACACGCTAATAGCAGTATCTTCATTGGCGACGAATCCGCTGATGCTAA TGGATCGTGCAGTGGCGGTACGGCCGGTGCAAGTGGGTGACGACGTGTTGTGGCAATTCCAACAACAGGGTGAGAACGGC GTGACGGCACTGCAGTATGTTAATGCCGTGAAGGGCGAGAAGGTGACCGGTGCCGATGAAGCCTATGCGAAGAAACTGGT AGAGCGCTTTGTGGGTGAGTCCGTTGAGGTCCGAGACACAGAGCTACTTACGAAATTTCGTTTTGATTATCCTAGTGTCT ACAAGCGTTTACCGGTGCGCAAGTTGTCGTTGGTGAATCAGCCGCAGCTGGCCATGCTGGTGGAAACTCGCAGTGGCCAT ATGGCTAACGAAGTCACTCCTTCTTCCATTCTACGTGCACTGCATTTCATCAATTTACATAAGTACCATTTCGTGGGCCG CCTAGGCCTATCCCCCCCGCAGCGAGATGCCGTAATGGTGGTTCTGGTGTTGCTGATCCTTGCCGCACTGGTGTCCGGTA TGCTGCTAGCTTGGAGGAGATTGGGCAAAGGTTAA
Upstream 100 bases:
>100_bases CGGCACCGGCGTTAGCCTCTCCGTTTAATCCCAACCCAGTGGCCAGCGTTACCCCCGGTATTGGCCGCTCACTTTATGTC GGCGCGGAGTATCGTCTGTG
Downstream 100 bases:
>100_bases GCGCGTTGGCTGGCGACCAGCTTATCGCTATTGCAGCACGTTTAACCTGTGCCAGTGTGGCCACCCAGTCCCTGGGCCGT TTCTTCGGCCCGGGAGCAAT
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 464; Mature: 464
Protein sequence:
>464_residues MRFLMTWHRRAAWLVAVPLMLWLLSGLLHPLMAWVLKPPMEGHQIVRPLLPSAAEVRPVDVLLQEKDIDAVTNVQLQQID GGWQYRVVEAGHTQPRYFHADSSEEIAHGDRLHAIWLARMLVDDPDAGILSAIPLEQFSNEYREVNRLLPVWRVALERED GLTLYLDTEQQRLASAATWGRRQALKAFSWFHSWHWLPHAARTPVVLLFSVPLLLMSLGGLILLVRRWRHLNKGNGVRRW HRWLTLVGGLSLFGFASSGVHVAIDKLNPPQWIDFRDDTLIAVSSLATNPLMLMDRAVAVRPVQVGDDVLWQFQQQGENG VTALQYVNAVKGEKVTGADEAYAKKLVERFVGESVEVRDTELLTKFRFDYPSVYKRLPVRKLSLVNQPQLAMLVETRSGH MANEVTPSSILRALHFINLHKYHFVGRLGLSPPQRDAVMVVLVLLILAALVSGMLLAWRRLGKG
Sequences:
>Translated_464_residues MRFLMTWHRRAAWLVAVPLMLWLLSGLLHPLMAWVLKPPMEGHQIVRPLLPSAAEVRPVDVLLQEKDIDAVTNVQLQQID GGWQYRVVEAGHTQPRYFHADSSEEIAHGDRLHAIWLARMLVDDPDAGILSAIPLEQFSNEYREVNRLLPVWRVALERED GLTLYLDTEQQRLASAATWGRRQALKAFSWFHSWHWLPHAARTPVVLLFSVPLLLMSLGGLILLVRRWRHLNKGNGVRRW HRWLTLVGGLSLFGFASSGVHVAIDKLNPPQWIDFRDDTLIAVSSLATNPLMLMDRAVAVRPVQVGDDVLWQFQQQGENG VTALQYVNAVKGEKVTGADEAYAKKLVERFVGESVEVRDTELLTKFRFDYPSVYKRLPVRKLSLVNQPQLAMLVETRSGH MANEVTPSSILRALHFINLHKYHFVGRLGLSPPQRDAVMVVLVLLILAALVSGMLLAWRRLGKG >Mature_464_residues MRFLMTWHRRAAWLVAVPLMLWLLSGLLHPLMAWVLKPPMEGHQIVRPLLPSAAEVRPVDVLLQEKDIDAVTNVQLQQID GGWQYRVVEAGHTQPRYFHADSSEEIAHGDRLHAIWLARMLVDDPDAGILSAIPLEQFSNEYREVNRLLPVWRVALERED GLTLYLDTEQQRLASAATWGRRQALKAFSWFHSWHWLPHAARTPVVLLFSVPLLLMSLGGLILLVRRWRHLNKGNGVRRW HRWLTLVGGLSLFGFASSGVHVAIDKLNPPQWIDFRDDTLIAVSSLATNPLMLMDRAVAVRPVQVGDDVLWQFQQQGENG VTALQYVNAVKGEKVTGADEAYAKKLVERFVGESVEVRDTELLTKFRFDYPSVYKRLPVRKLSLVNQPQLAMLVETRSGH MANEVTPSSILRALHFINLHKYHFVGRLGLSPPQRDAVMVVLVLLILAALVSGMLLAWRRLGKG
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 52687; Mature: 52687
Theoretical pI: Translated: 10.11; Mature: 10.11
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 2.8 %Met (Translated Protein) 2.8 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 2.8 %Met (Mature Protein) 2.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MRFLMTWHRRAAWLVAVPLMLWLLSGLLHPLMAWVLKPPMEGHQIVRPLLPSAAEVRPVD CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCCCCHHH VLLQEKDIDAVTNVQLQQIDGGWQYRVVEAGHTQPRYFHADSSEEIAHGDRLHAIWLARM HEEECCCCCHHHCCEEEEECCCEEEEEEECCCCCCCEEECCCCCHHHCCCHHHHHHHHHH LVDDPDAGILSAIPLEQFSNEYREVNRLLPVWRVALEREDGLTLYLDTEQQRLASAATWG HHCCCCCCHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECHHHHHHHHHHHH RRQALKAFSWFHSWHWLPHAARTPVVLLFSVPLLLMSLGGLILLVRRWRHLNKGNGVRRW HHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHH HRWLTLVGGLSLFGFASSGVHVAIDKLNPPQWIDFRDDTLIAVSSLATNPLMLMDRAVAV HHHHHHHHHHHHHHCCCCCCEEEEECCCCCCEECCCCCCEEEEHHHCCCCHHHHHHHHHE RPVQVGDDVLWQFQQQGENGVTALQYVNAVKGEKVTGADEAYAKKLVERFVGESVEVRDT EEEECCHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCCCEEHHH ELLTKFRFDYPSVYKRLPVRKLSLVNQPQLAMLVETRSGHMANEVTPSSILRALHFINLH HHHHHHCCCCHHHHHHCCHHHHHHCCCCCEEEEEECCCCCCCCCCCHHHHHHHHHHHHHH KYHFVGRLGLSPPQRDAVMVVLVLLILAALVSGMLLAWRRLGKG HHHHEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCC >Mature Secondary Structure MRFLMTWHRRAAWLVAVPLMLWLLSGLLHPLMAWVLKPPMEGHQIVRPLLPSAAEVRPVD CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCCCCHHH VLLQEKDIDAVTNVQLQQIDGGWQYRVVEAGHTQPRYFHADSSEEIAHGDRLHAIWLARM HEEECCCCCHHHCCEEEEECCCEEEEEEECCCCCCCEEECCCCCHHHCCCHHHHHHHHHH LVDDPDAGILSAIPLEQFSNEYREVNRLLPVWRVALEREDGLTLYLDTEQQRLASAATWG HHCCCCCCHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECHHHHHHHHHHHH RRQALKAFSWFHSWHWLPHAARTPVVLLFSVPLLLMSLGGLILLVRRWRHLNKGNGVRRW HHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHH HRWLTLVGGLSLFGFASSGVHVAIDKLNPPQWIDFRDDTLIAVSSLATNPLMLMDRAVAV HHHHHHHHHHHHHHCCCCCCEEEEECCCCCCEECCCCCCEEEEHHHCCCCHHHHHHHHHE RPVQVGDDVLWQFQQQGENGVTALQYVNAVKGEKVTGADEAYAKKLVERFVGESVEVRDT EEEECCHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCCCEEHHH ELLTKFRFDYPSVYKRLPVRKLSLVNQPQLAMLVETRSGHMANEVTPSSILRALHFINLH HHHHHHCCCCHHHHHHCCHHHHHHCCCCCEEEEEECCCCCCCCCCCHHHHHHHHHHHHHH KYHFVGRLGLSPPQRDAVMVVLVLLILAALVSGMLLAWRRLGKG HHHHEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA