| Definition | Alcanivorax borkumensis SK2 chromosome, complete genome. |
|---|---|
| Accession | NC_008260 |
| Length | 3,120,143 |
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The map label for this gene is rec2 [H]
Identifier: 110833913
GI number: 110833913
Start: 1192781
End: 1195009
Strand: Direct
Name: rec2 [H]
Synonym: ABO_1052
Alternate gene names: 110833913
Gene position: 1192781-1195009 (Clockwise)
Preceding gene: 110833911
Following gene: 110833914
Centisome position: 38.23
GC content: 57.56
Gene sequence:
>2229_bases ATGCGAATGTGGTTAACGACCGCCGCTATCGTGGCGGGTTGCTGGCTGGGTGTATTGTGGCCACTACTGGTGTTAGCGGT TGTTGCAGCGGCTGGGATGTGGCGCTGTCGGGCCCTGTGGCTTGTGTGGTTAATAATTGGTTACGGTTTTGGCGTTTGGC AGCTGAATATAGGATTGATAAAGCGTCTGCCTGCTGATCAGGATCGGGCCGTAGTTAGCCTGCAGGGCGAAGTAGTGGAT GTCCCGGTGACTCATCGTGAGTTTCGTTTTGGTCGCTGGCAATGGCGCCAGCAAATACTTTTTTTGGTGTGGGGAAGCGA GGAGTGGCCTGGAAAGCACCAAGTCGTGCTTAATAGCTATGCGCCGCCTGTGCTGCTGGGTGCGGGCGATCGGGTGAGGC TAACGGCGGAACTGAAGGTGCCGCGTGGCCTGTACAACCGCTTCGGTCCTGATCGCAGCCGTTCTGACCTCTCCGCGGGG ATAGATGCCCGCGGTACCCTTAAGCAGATATCAGTGGAGGGGAATAACCGCGGTATTGCTGCCTGGCGTGAGCAGTTGTC TTACCGTGTGGAGGAGCGGGTCAGTGGTTCGCCCCTAGGCCAAGCAGTACTTCCTGCTCTGATCGTTGGCAATCGCTCCG GGCTGGAGGCGTCGCTGTGGCAAGCCTTCCAGGTAACGGGAGGCGCCCATCTATTGGCTATTTCCGGCCTGCATATCGCT ATTGTGGCCGGCTGGTTCTGGTGGTTGGGCCGGGTGGTGTTTGCCCCGGTTCTTCAGGCGTTGATGCCGGTATTGCGGCG ATACTCTCAGCAGCATCTGGCTTGGGTGCCAGCTCTATTAGCGGCAACGGGGTATGCCGCATTGGCGGGATTTAGCCTTC CTACGGTGCGGGCATTGGTCATGCTGATAGTGGTGGCGTTGGCGCAGTGGTGGCGAGTGCCGATTTCGCTGGGGCGAGCA TTGGCGTTGGCCTTGCTGGTGGTACTCATGATCATGCCGCTGGCGGCGCTGTCAGAAAGCCTGTGGTTATCCTTCGGGGC GGTGGCATTTATTGCCATGTTAACCCGCAGTCATGGTTCTTGGCGGTTAATCATACTGCTGCCTGTGGTAATGACGATGG CCAGCGCTGGGTTGTTTCATCAATGGACACCCAGCGCACCGCTGGCCAATCTTATATTGGTTCCCTTATACACTGTGTTG GTCATCCCGGCAGCCTTGCTCGGGGCGTTGCTGGACCAAACTTGGTTGCTGCAAGCGGCTGCGACAGGCGTGGAATTGTC TGTGTGGGTGATGACTTGGTTGGCGAACCAGGGGATACCGTCATGGCTCATGCTTCCTTCTACAGTGTCGGGCATTGTGT TGATGTTTGGCTTGATGCTTCTGCTGATGCCATTTGTTCCTTTTCCCAGACGATTGTTGCCGTTCTGTCTATTACCCTGG CTGACACAGCAACCAGAGCCTCTGGCGTCGGGGGAGTGGTCGCTGACAGCTTTCGATGTGGGGCAGGGGCTAGCGGTGGC AATACGAACCCGCGAGCATTTGCTGATCTATGACGCTGGGCCGTCCTGGCCGGGTGGCAGTGTTGCGGCACAGAGCATAT CACCGTGGCTGTCTGTCACGGGGCAGAAGGTGGATCGCATGCTGATTAGTCATGGTGACAATGATCATGCTGGTGGCTTG GTAGACTTGCCGTCTGCGGTTGCCTTATTCAGTGGTGAGCCGCATCGAGTACCCGGTAGCCATTTTTGTCGGGCGGGGGA TCGTTGGTCGTGGGATGGCGTCTCGTTCACGGTACTGTGGCCCCGAGAAACGGGTCTAAAGAGTAATGCGGCCAGTTGTG TATTGCATGTCGATGGTCCCTTTGGGTCCGTGTTGCTGCCCGGCGATATTGGCGTTCAGCAGGAATATCATTTGCTTGGA ACGTTGCCTTCGGTGGACCTGCTGGTGTTGGGGCACCATGGAAGTCAGTCCAGTACTAGCGCCGCGCTACTGCGGCAGTT ACAGCCGCGCTTTGCTATCGTCAGTGCGGGTTACCGGAACCGGTTTAATCATCCTCATCCAGCGGTGTTGGGTCGGCTGG ATAGCGCTGGCATCACCGTTCTGCGTACCGACAGAGATGGCATGATTGTGTTTCGGCAGGGGGGCGCAGATAATGTCCGG CTTATAACAAAATGGCGGCAAGCGTATGCCCGGCCTTGGCATGGGCCGGCCGTTTGGCGTCTCTGGTAA
Upstream 100 bases:
>100_bases GCATACTGCCACAAAGGCGAGGAAAGGAATTGTTGTTCCTATAGCAGCGCTGATTTCGCCGTTTACATGGGGTTGTGATA GATAAAACCGCGGAGCAAGG
Downstream 100 bases:
>100_bases TGTGATTTGTGCGAATGGGGAGAAGTTAAGGTGCAGGATCTTGTGCAGTCCGGAGGCTGGATGATGCTTCCGATCTTGAT CTGTTCGGTGGTGGCGTTGG
Product: DNA internalization-like protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 742; Mature: 742
Protein sequence:
>742_residues MRMWLTTAAIVAGCWLGVLWPLLVLAVVAAAGMWRCRALWLVWLIIGYGFGVWQLNIGLIKRLPADQDRAVVSLQGEVVD VPVTHREFRFGRWQWRQQILFLVWGSEEWPGKHQVVLNSYAPPVLLGAGDRVRLTAELKVPRGLYNRFGPDRSRSDLSAG IDARGTLKQISVEGNNRGIAAWREQLSYRVEERVSGSPLGQAVLPALIVGNRSGLEASLWQAFQVTGGAHLLAISGLHIA IVAGWFWWLGRVVFAPVLQALMPVLRRYSQQHLAWVPALLAATGYAALAGFSLPTVRALVMLIVVALAQWWRVPISLGRA LALALLVVLMIMPLAALSESLWLSFGAVAFIAMLTRSHGSWRLIILLPVVMTMASAGLFHQWTPSAPLANLILVPLYTVL VIPAALLGALLDQTWLLQAAATGVELSVWVMTWLANQGIPSWLMLPSTVSGIVLMFGLMLLLMPFVPFPRRLLPFCLLPW LTQQPEPLASGEWSLTAFDVGQGLAVAIRTREHLLIYDAGPSWPGGSVAAQSISPWLSVTGQKVDRMLISHGDNDHAGGL VDLPSAVALFSGEPHRVPGSHFCRAGDRWSWDGVSFTVLWPRETGLKSNAASCVLHVDGPFGSVLLPGDIGVQQEYHLLG TLPSVDLLVLGHHGSQSSTSAALLRQLQPRFAIVSAGYRNRFNHPHPAVLGRLDSAGITVLRTDRDGMIVFRQGGADNVR LITKWRQAYARPWHGPAVWRLW
Sequences:
>Translated_742_residues MRMWLTTAAIVAGCWLGVLWPLLVLAVVAAAGMWRCRALWLVWLIIGYGFGVWQLNIGLIKRLPADQDRAVVSLQGEVVD VPVTHREFRFGRWQWRQQILFLVWGSEEWPGKHQVVLNSYAPPVLLGAGDRVRLTAELKVPRGLYNRFGPDRSRSDLSAG IDARGTLKQISVEGNNRGIAAWREQLSYRVEERVSGSPLGQAVLPALIVGNRSGLEASLWQAFQVTGGAHLLAISGLHIA IVAGWFWWLGRVVFAPVLQALMPVLRRYSQQHLAWVPALLAATGYAALAGFSLPTVRALVMLIVVALAQWWRVPISLGRA LALALLVVLMIMPLAALSESLWLSFGAVAFIAMLTRSHGSWRLIILLPVVMTMASAGLFHQWTPSAPLANLILVPLYTVL VIPAALLGALLDQTWLLQAAATGVELSVWVMTWLANQGIPSWLMLPSTVSGIVLMFGLMLLLMPFVPFPRRLLPFCLLPW LTQQPEPLASGEWSLTAFDVGQGLAVAIRTREHLLIYDAGPSWPGGSVAAQSISPWLSVTGQKVDRMLISHGDNDHAGGL VDLPSAVALFSGEPHRVPGSHFCRAGDRWSWDGVSFTVLWPRETGLKSNAASCVLHVDGPFGSVLLPGDIGVQQEYHLLG TLPSVDLLVLGHHGSQSSTSAALLRQLQPRFAIVSAGYRNRFNHPHPAVLGRLDSAGITVLRTDRDGMIVFRQGGADNVR LITKWRQAYARPWHGPAVWRLW >Mature_742_residues MRMWLTTAAIVAGCWLGVLWPLLVLAVVAAAGMWRCRALWLVWLIIGYGFGVWQLNIGLIKRLPADQDRAVVSLQGEVVD VPVTHREFRFGRWQWRQQILFLVWGSEEWPGKHQVVLNSYAPPVLLGAGDRVRLTAELKVPRGLYNRFGPDRSRSDLSAG IDARGTLKQISVEGNNRGIAAWREQLSYRVEERVSGSPLGQAVLPALIVGNRSGLEASLWQAFQVTGGAHLLAISGLHIA IVAGWFWWLGRVVFAPVLQALMPVLRRYSQQHLAWVPALLAATGYAALAGFSLPTVRALVMLIVVALAQWWRVPISLGRA LALALLVVLMIMPLAALSESLWLSFGAVAFIAMLTRSHGSWRLIILLPVVMTMASAGLFHQWTPSAPLANLILVPLYTVL VIPAALLGALLDQTWLLQAAATGVELSVWVMTWLANQGIPSWLMLPSTVSGIVLMFGLMLLLMPFVPFPRRLLPFCLLPW LTQQPEPLASGEWSLTAFDVGQGLAVAIRTREHLLIYDAGPSWPGGSVAAQSISPWLSVTGQKVDRMLISHGDNDHAGGL VDLPSAVALFSGEPHRVPGSHFCRAGDRWSWDGVSFTVLWPRETGLKSNAASCVLHVDGPFGSVLLPGDIGVQQEYHLLG TLPSVDLLVLGHHGSQSSTSAALLRQLQPRFAIVSAGYRNRFNHPHPAVLGRLDSAGITVLRTDRDGMIVFRQGGADNVR LITKWRQAYARPWHGPAVWRLW
Specific function: Essential for natural transformation. Could be a transporter involved in DNA uptake [H]
COG id: COG2333
COG function: function code R; Predicted hydrolase (metallo-beta-lactamase superfamily)
Gene ontology:
Cell location: Cell inner membrane; Multi-pass membrane protein (Probable) [H]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: To B.subtilis ComEC, H.influenzae REC2, and E.coli YcaI [H]
Homologues:
Organism=Escherichia coli, GI87081801, Length=641, Percent_Identity=28.393135725429, Blast_Score=157, Evalue=3e-39,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR001279 - InterPro: IPR004477 - InterPro: IPR004797 [H]
Pfam domain/function: PF03772 Competence; PF00753 Lactamase_B [H]
EC number: NA
Molecular weight: Translated: 81343; Mature: 81343
Theoretical pI: Translated: 10.44; Mature: 10.44
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.7 %Cys (Translated Protein) 2.3 %Met (Translated Protein) 3.0 %Cys+Met (Translated Protein) 0.7 %Cys (Mature Protein) 2.3 %Met (Mature Protein) 3.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MRMWLTTAAIVAGCWLGVLWPLLVLAVVAAAGMWRCRALWLVWLIIGYGFGVWQLNIGLI CCEEHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCEEEEEHHHH KRLPADQDRAVVSLQGEVVDVPVTHREFRFGRWQWRQQILFLVWGSEEWPGKHQVVLNSY HCCCCCCCCEEEEECCCEEECCCCHHHHHCHHHHHCCEEEEEEECCCCCCCCCEEEEECC APPVLLGAGDRVRLTAELKVPRGLYNRFGPDRSRSDLSAGIDARGTLKQISVEGNNRGIA CCCEEECCCCEEEEEEEECCCHHHHHHCCCCCCCHHHHCCCCCCCCEEEEEECCCCCCHH AWREQLSYRVEERVSGSPLGQAVLPALIVGNRSGLEASLWQAFQVTGGAHLLAISGLHIA HHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHCCCEEEEEECCHHHH IVAGWFWWLGRVVFAPVLQALMPVLRRYSQQHLAWVPALLAATGYAALAGFSLPTVRALV HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHH MLIVVALAQWWRVPISLGRALALALLVVLMIMPLAALSESLWLSFGAVAFIAMLTRSHGS HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC WRLIILLPVVMTMASAGLFHQWTPSAPLANLILVPLYTVLVIPAALLGALLDQTWLLQAA EEEEHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH ATGVELSVWVMTWLANQGIPSWLMLPSTVSGIVLMFGLMLLLMPFVPFPRRLLPFCLLPW HCCCCHHHHHHHHHHCCCCCCEEECCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH LTQQPEPLASGEWSLTAFDVGQGLAVAIRTREHLLIYDAGPSWPGGSVAAQSISPWLSVT HCCCCCCCCCCCCEEEEEECCCCEEEEEEECCEEEEEECCCCCCCCCHHHHHCCHHHHHH GQKVDRMLISHGDNDHAGGLVDLPSAVALFSGEPHRVPGSHFCRAGDRWSWDGVSFTVLW HHHHHHHHHHCCCCCCCCCEEECCCHHHHCCCCCCCCCCHHHCCCCCCCCCCCEEEEEEE PRETGLKSNAASCVLHVDGPFGSVLLPGDIGVQQEYHLLGTLPSVDLLVLGHHGSQSSTS CCCCCCCCCCCEEEEEECCCCCCEEECCCCCCCCCHHHEECCCCCEEEEEECCCCCCHHH AALLRQLQPRFAIVSAGYRNRFNHPHPAVLGRLDSAGITVLRTDRDGMIVFRQGGADNVR HHHHHHCCCCEEEEECCHHCCCCCCCHHHHCCCCCCCEEEEEECCCCEEEEECCCCCCHH LITKWRQAYARPWHGPAVWRLW HHHHHHHHHCCCCCCCEEEEEC >Mature Secondary Structure MRMWLTTAAIVAGCWLGVLWPLLVLAVVAAAGMWRCRALWLVWLIIGYGFGVWQLNIGLI CCEEHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCEEEEEHHHH KRLPADQDRAVVSLQGEVVDVPVTHREFRFGRWQWRQQILFLVWGSEEWPGKHQVVLNSY HCCCCCCCCEEEEECCCEEECCCCHHHHHCHHHHHCCEEEEEEECCCCCCCCCEEEEECC APPVLLGAGDRVRLTAELKVPRGLYNRFGPDRSRSDLSAGIDARGTLKQISVEGNNRGIA CCCEEECCCCEEEEEEEECCCHHHHHHCCCCCCCHHHHCCCCCCCCEEEEEECCCCCCHH AWREQLSYRVEERVSGSPLGQAVLPALIVGNRSGLEASLWQAFQVTGGAHLLAISGLHIA HHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHCCCEEEEEECCHHHH IVAGWFWWLGRVVFAPVLQALMPVLRRYSQQHLAWVPALLAATGYAALAGFSLPTVRALV HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHH MLIVVALAQWWRVPISLGRALALALLVVLMIMPLAALSESLWLSFGAVAFIAMLTRSHGS HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC WRLIILLPVVMTMASAGLFHQWTPSAPLANLILVPLYTVLVIPAALLGALLDQTWLLQAA EEEEHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH ATGVELSVWVMTWLANQGIPSWLMLPSTVSGIVLMFGLMLLLMPFVPFPRRLLPFCLLPW HCCCCHHHHHHHHHHCCCCCCEEECCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH LTQQPEPLASGEWSLTAFDVGQGLAVAIRTREHLLIYDAGPSWPGGSVAAQSISPWLSVT HCCCCCCCCCCCCEEEEEECCCCEEEEEEECCEEEEEECCCCCCCCCHHHHHCCHHHHHH GQKVDRMLISHGDNDHAGGLVDLPSAVALFSGEPHRVPGSHFCRAGDRWSWDGVSFTVLW HHHHHHHHHHCCCCCCCCCEEECCCHHHHCCCCCCCCCCHHHCCCCCCCCCCCEEEEEEE PRETGLKSNAASCVLHVDGPFGSVLLPGDIGVQQEYHLLGTLPSVDLLVLGHHGSQSSTS CCCCCCCCCCCEEEEEECCCCCCEEECCCCCCCCCHHHEECCCCCEEEEEECCCCCCHHH AALLRQLQPRFAIVSAGYRNRFNHPHPAVLGRLDSAGITVLRTDRDGMIVFRQGGADNVR HHHHHHCCCCEEEEECCHHCCCCCCCHHHHCCCCCCCEEEEEECCCCEEEEECCCCCCHH LITKWRQAYARPWHGPAVWRLW HHHHHHHHHCCCCCCCEEEEEC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 7934834; 8830266 [H]