| Definition | Alcanivorax borkumensis SK2 chromosome, complete genome. |
|---|---|
| Accession | NC_008260 |
| Length | 3,120,143 |
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The map label for this gene is 110833875
Identifier: 110833875
GI number: 110833875
Start: 1152370
End: 1153161
Strand: Direct
Name: 110833875
Synonym: ABO_1014
Alternate gene names: NA
Gene position: 1152370-1153161 (Clockwise)
Preceding gene: 110833874
Following gene: 110833876
Centisome position: 36.93
GC content: 54.92
Gene sequence:
>792_bases ATGAACGTTCGTTTACTGCCTGCCGTTTTGTTTATCAGCTTGGCTGCGCCCACTGTGCTGGCCCAGAGCCCGGAAGAAAA AGGGCTGCAAATCGCCCAGGAGGCGGATAGCCGTGGCGAGGGTTTCGGGGACTTCCAGGCGGACATGAAAATGGTGCTGA TCAGTAAGAGCGGCCAGACCTCTGAGCGGGAGCTGCGAGTGAAAACGCTGGAAGGCACCGGCGAGGGGGAGGGCGACAAG AGCTTGACCATTTTCGATACCCCCCGTGATGTACGTGGTACGGCCATGCTCACGTTCAGCTACAAAACCCGCGACGACGA CCAGTGGCTGTATCTGCCCGCCCTCCGCCGGGTAAAGACCATCGCCTCGCGGAATAAATCCGGGCCTTTCATGGGCAGTG AGTTTAGTTTTGAAGACATGCGCGGCCAGGAAGTGGAGAAATACACCTACGAATACCTGCGCGATGAGCCCTGCGGCGAG CTGACCTGTTTTGTGGTAGCTCGTTACCCGCAAGATGAAGACTCCGGTTATATCCGTCAGGTTTCCTGGATCGATCAGCA GGAATACCGTACCTGGAAAGTAGATTATTACGATCGCAAGGAAAGCCTGCTCAAGACACTGAAAGCCAGTGATTTTTCCC AGTACCAGGACAAGTATTGGCAGCCTGGGAAGATGTCCATGGTCAACCACCAAACCGGAAAATCCACCGACCTATTCTGG AGTAACTACCGCTACGGTACCGGGCTGGACGGTGCGGATTTCAACAAAAATAGCTTGAAACGCGCACGTTGA
Upstream 100 bases:
>100_bases CTTTGAGCATCGCCGTTTTGGTTTAAATCGCTATCATGGTAAACACGCTGTTGCTTGCTTTGCCGGCATCGCCCCAGACA TGTGTACCGTGAGGAACTCC
Downstream 100 bases:
>100_bases TCTCGCGCGTTAGTACTATGAAAATCGGGTTGGTTACGGCTTCGCTGTTGACGATGCCATTGGCTTCCTTTGCGTGGGAA TTTCGCGGTGAAGTGGGGTT
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 263; Mature: 263
Protein sequence:
>263_residues MNVRLLPAVLFISLAAPTVLAQSPEEKGLQIAQEADSRGEGFGDFQADMKMVLISKSGQTSERELRVKTLEGTGEGEGDK SLTIFDTPRDVRGTAMLTFSYKTRDDDQWLYLPALRRVKTIASRNKSGPFMGSEFSFEDMRGQEVEKYTYEYLRDEPCGE LTCFVVARYPQDEDSGYIRQVSWIDQQEYRTWKVDYYDRKESLLKTLKASDFSQYQDKYWQPGKMSMVNHQTGKSTDLFW SNYRYGTGLDGADFNKNSLKRAR
Sequences:
>Translated_263_residues MNVRLLPAVLFISLAAPTVLAQSPEEKGLQIAQEADSRGEGFGDFQADMKMVLISKSGQTSERELRVKTLEGTGEGEGDK SLTIFDTPRDVRGTAMLTFSYKTRDDDQWLYLPALRRVKTIASRNKSGPFMGSEFSFEDMRGQEVEKYTYEYLRDEPCGE LTCFVVARYPQDEDSGYIRQVSWIDQQEYRTWKVDYYDRKESLLKTLKASDFSQYQDKYWQPGKMSMVNHQTGKSTDLFW SNYRYGTGLDGADFNKNSLKRAR >Mature_263_residues MNVRLLPAVLFISLAAPTVLAQSPEEKGLQIAQEADSRGEGFGDFQADMKMVLISKSGQTSERELRVKTLEGTGEGEGDK SLTIFDTPRDVRGTAMLTFSYKTRDDDQWLYLPALRRVKTIASRNKSGPFMGSEFSFEDMRGQEVEKYTYEYLRDEPCGE LTCFVVARYPQDEDSGYIRQVSWIDQQEYRTWKVDYYDRKESLLKTLKASDFSQYQDKYWQPGKMSMVNHQTGKSTDLFW SNYRYGTGLDGADFNKNSLKRAR
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 30272; Mature: 30272
Theoretical pI: Translated: 5.27; Mature: 5.27
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.8 %Cys (Translated Protein) 3.0 %Met (Translated Protein) 3.8 %Cys+Met (Translated Protein) 0.8 %Cys (Mature Protein) 3.0 %Met (Mature Protein) 3.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNVRLLPAVLFISLAAPTVLAQSPEEKGLQIAQEADSRGEGFGDFQADMKMVLISKSGQT CCCCHHHHHHHHHHHCCHHHHCCCHHHCCHHHHHHCCCCCCCCCCCCCEEEEEEECCCCC SERELRVKTLEGTGEGEGDKSLTIFDTPRDVRGTAMLTFSYKTRDDDQWLYLPALRRVKT CCCEEEEEEECCCCCCCCCCEEEEEECCCCCCCEEEEEEEEECCCCCCEEEHHHHHHHHH IASRNKSGPFMGSEFSFEDMRGQEVEKYTYEYLRDEPCGELTCFVVARYPQDEDSGYIRQ HHHCCCCCCCCCCCCCHHHCCCCHHHHHHHHHHCCCCCCCEEEEEEEECCCCCCCCEEEE VSWIDQQEYRTWKVDYYDRKESLLKTLKASDFSQYQDKYWQPGKMSMVNHQTGKSTDLFW EECCCCCCCEEEEEEEHHHHHHHHHHHHHCCHHHHHHHHCCCCCCEEEECCCCCCCCEEE SNYRYGTGLDGADFNKNSLKRAR CCCCCCCCCCCCCCCHHHHCCCC >Mature Secondary Structure MNVRLLPAVLFISLAAPTVLAQSPEEKGLQIAQEADSRGEGFGDFQADMKMVLISKSGQT CCCCHHHHHHHHHHHCCHHHHCCCHHHCCHHHHHHCCCCCCCCCCCCCEEEEEEECCCCC SERELRVKTLEGTGEGEGDKSLTIFDTPRDVRGTAMLTFSYKTRDDDQWLYLPALRRVKT CCCEEEEEEECCCCCCCCCCEEEEEECCCCCCCEEEEEEEEECCCCCCEEEHHHHHHHHH IASRNKSGPFMGSEFSFEDMRGQEVEKYTYEYLRDEPCGELTCFVVARYPQDEDSGYIRQ HHHCCCCCCCCCCCCCHHHCCCCHHHHHHHHHHCCCCCCCEEEEEEEECCCCCCCCEEEE VSWIDQQEYRTWKVDYYDRKESLLKTLKASDFSQYQDKYWQPGKMSMVNHQTGKSTDLFW EECCCCCCCEEEEEEEHHHHHHHHHHHHHCCHHHHHHHHCCCCCCEEEECCCCCCCCEEE SNYRYGTGLDGADFNKNSLKRAR CCCCCCCCCCCCCCCHHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 9665876 [H]