| Definition | Alcanivorax borkumensis SK2 chromosome, complete genome. |
|---|---|
| Accession | NC_008260 |
| Length | 3,120,143 |
Click here to switch to the map view.
The map label for this gene is 110833874
Identifier: 110833874
GI number: 110833874
Start: 1151566
End: 1152105
Strand: Direct
Name: 110833874
Synonym: ABO_1013
Alternate gene names: NA
Gene position: 1151566-1152105 (Clockwise)
Preceding gene: 110833873
Following gene: 110833875
Centisome position: 36.91
GC content: 58.33
Gene sequence:
>540_bases GTGTTTTTTATGTCCAGAATGGTTCGAGATAATACCGTTAGTGGTTTGCGCGAGCGGCTCTACTTTGCCCGCGCGCTGTT GCAGCAACTGACTCACGATCAGGCCGATGCCACCCCAACCGTGCGGCTGGCATTGCGTGGGGCGGTGGTCTTTCACCTTT ATTCCGTGCTGGTGGGCTTGGCGCGGCAATCTGGAAAGACCTTTCAGGTTGCCCATACCGATACCTTGTTCAGCCTTGCT GCATTGGAGCAGGCTTTTCGGGACGCGGGAGTGGAGGCGCCGGAAATCGCTATTTTGGCTCGTGCCCGTGCCGATCGGGG TGATCTGATTGCCTGGCTGGATGGTGAAATGCAAACCGCACTGGGCGCGGCTGGTTTGGCCCGTCGTCCGACACCGCCCA ATGAAAGTGATGCGCTTAACTTGATGGCAGAAGACCGTTATGCCCCTCTGGCCGACGGTGACCTGCAACGCCTTGCTGAC AGCGTTACCCGCGTGGGAGAGCTGGTAGAGCACTGCATGGGGTATCTGGAAGAGTGGTGA
Upstream 100 bases:
>100_bases GCGCAGCAAAGAGAGGATGAACGCGGGTACGGCTAGCCAATTCATTGGGTGTGCTCCGCGCCTTGTAGCTCAAAGCTTGT AGTGGGTAGCTGTTTTAAGA
Downstream 100 bases:
>100_bases AGGTCAGTCGATAGTTGATCGTAGGCAGTTGAGCGCTAGGTGCATCGATGATGTTTCTGGTGGCAAACGCAAGAGGCCGC TCCCAGAGAAGGGGGCGGCC
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 179; Mature: 179
Protein sequence:
>179_residues MFFMSRMVRDNTVSGLRERLYFARALLQQLTHDQADATPTVRLALRGAVVFHLYSVLVGLARQSGKTFQVAHTDTLFSLA ALEQAFRDAGVEAPEIAILARARADRGDLIAWLDGEMQTALGAAGLARRPTPPNESDALNLMAEDRYAPLADGDLQRLAD SVTRVGELVEHCMGYLEEW
Sequences:
>Translated_179_residues MFFMSRMVRDNTVSGLRERLYFARALLQQLTHDQADATPTVRLALRGAVVFHLYSVLVGLARQSGKTFQVAHTDTLFSLA ALEQAFRDAGVEAPEIAILARARADRGDLIAWLDGEMQTALGAAGLARRPTPPNESDALNLMAEDRYAPLADGDLQRLAD SVTRVGELVEHCMGYLEEW >Mature_179_residues MFFMSRMVRDNTVSGLRERLYFARALLQQLTHDQADATPTVRLALRGAVVFHLYSVLVGLARQSGKTFQVAHTDTLFSLA ALEQAFRDAGVEAPEIAILARARADRGDLIAWLDGEMQTALGAAGLARRPTPPNESDALNLMAEDRYAPLADGDLQRLAD SVTRVGELVEHCMGYLEEW
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 19745; Mature: 19745
Theoretical pI: Translated: 5.02; Mature: 5.02
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.6 %Cys (Translated Protein) 3.4 %Met (Translated Protein) 3.9 %Cys+Met (Translated Protein) 0.6 %Cys (Mature Protein) 3.4 %Met (Mature Protein) 3.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MFFMSRMVRDNTVSGLRERLYFARALLQQLTHDQADATPTVRLALRGAVVFHLYSVLVGL CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHH ARQSGKTFQVAHTDTLFSLAALEQAFRDAGVEAPEIAILARARADRGDLIAWLDGEMQTA HHHCCCEEEEEHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHCCCCCCCEEEEECCHHHHH LGAAGLARRPTPPNESDALNLMAEDRYAPLADGDLQRLADSVTRVGELVEHCMGYLEEW HHHHHCCCCCCCCCCCHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCC >Mature Secondary Structure MFFMSRMVRDNTVSGLRERLYFARALLQQLTHDQADATPTVRLALRGAVVFHLYSVLVGL CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHH ARQSGKTFQVAHTDTLFSLAALEQAFRDAGVEAPEIAILARARADRGDLIAWLDGEMQTA HHHCCCEEEEEHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHCCCCCCCEEEEECCHHHHH LGAAGLARRPTPPNESDALNLMAEDRYAPLADGDLQRLADSVTRVGELVEHCMGYLEEW HHHHHCCCCCCCCCCCHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA