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The map label for this gene is rimM

Identifier: 110833660

GI number: 110833660

Start: 892706

End: 893296

Strand: Direct

Name: rimM

Synonym: ABO_0799

Alternate gene names: 110833660

Gene position: 892706-893296 (Clockwise)

Preceding gene: 110833659

Following gene: 110833661

Centisome position: 28.61

GC content: 59.56

Gene sequence:

>591_bases
ATGGCAGAGCGAGGACAATCCTCTTCGGCTGAAGGGGGCGCGTCCTCCCAGCTGGTGGTAGTCGGCCGCATCCTTGGGGT
GCACGGCGTCAAGGGGTGGGTAAAGGTGTATTCCTATACCGACCCCATGGTCAACCTCCAGCAGTACCAGCCCTGGCACC
TGAAACAGGGCGCCCTGAACTCAGGCGGTTCTAGCGCTGCTGGAACATGGAAACCGGTGAAAGTGACCGGCTTTCGGCCT
CAAGGGAAAGGGTTGATCGCGCAACTGGAAGGCGTATCCGACCGGGAAGCTGCGGCGGCCTTGGTGGGGCAGGATATCGG
CGTACCTGCCGATTTGCTGCCGCAATCAGGCCAGGGTGAGTATTATTGGCGCGACTTGATTGGCCTACGGGTAAAACATG
TGAATGGCATGGACCTGGGCAGCGTGACGCGCATGGTGGAAACCGGTGCCAATGACGTGGTCGTGGTGCGTGGGGACCGC
AATAGCCTGGATCGGCGTGAGCGTCTGATTCCTTGGCTTCCGGAGGACGTGATCACTGCGATTAGCCTAGAAGACGGCGA
AATGACGGTGGATTGGGATCCGGACTTTTAA

Upstream 100 bases:

>100_bases
TCAAGCTGAACTTAGAAAGCCTGGATGCCTGGGTTGCTAAGGGTGCACAGCTGTCTGACCGTGTTAAGACCCTTGCCAAA
CAGGCCCGTAAGGCAGCCTG

Downstream 100 bases:

>100_bases
ATGATGACGACGAAGCCTACGTTTGCCGTCACTCTGGTAACGTTGTTTCCGGAGATGGCACAAGCGATTACTGGCTTTGG
CGTTACTCGGCGGGCTGTCG

Product: 16S rRNA processing protein RimM

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 196; Mature: 195

Protein sequence:

>196_residues
MAERGQSSSAEGGASSQLVVVGRILGVHGVKGWVKVYSYTDPMVNLQQYQPWHLKQGALNSGGSSAAGTWKPVKVTGFRP
QGKGLIAQLEGVSDREAAAALVGQDIGVPADLLPQSGQGEYYWRDLIGLRVKHVNGMDLGSVTRMVETGANDVVVVRGDR
NSLDRRERLIPWLPEDVITAISLEDGEMTVDWDPDF

Sequences:

>Translated_196_residues
MAERGQSSSAEGGASSQLVVVGRILGVHGVKGWVKVYSYTDPMVNLQQYQPWHLKQGALNSGGSSAAGTWKPVKVTGFRP
QGKGLIAQLEGVSDREAAAALVGQDIGVPADLLPQSGQGEYYWRDLIGLRVKHVNGMDLGSVTRMVETGANDVVVVRGDR
NSLDRRERLIPWLPEDVITAISLEDGEMTVDWDPDF
>Mature_195_residues
AERGQSSSAEGGASSQLVVVGRILGVHGVKGWVKVYSYTDPMVNLQQYQPWHLKQGALNSGGSSAAGTWKPVKVTGFRPQ
GKGLIAQLEGVSDREAAAALVGQDIGVPADLLPQSGQGEYYWRDLIGLRVKHVNGMDLGSVTRMVETGANDVVVVRGDRN
SLDRRERLIPWLPEDVITAISLEDGEMTVDWDPDF

Specific function: An accessory protein needed during the final step in the assembly of 30S ribosomal subunit, possibly for assembly of the head region. Probably interacts with S19. Essential for efficient processing of 16S rRNA. May be needed both before and after rbfA dur

COG id: COG0806

COG function: function code J; RimM protein, required for 16S rRNA processing

Gene ontology:

Cell location: Cytoplasm

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 PRC barrel domain

Homologues:

Organism=Escherichia coli, GI87082136, Length=179, Percent_Identity=36.3128491620112, Blast_Score=134, Evalue=3e-33,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RIMM_ALCBS (Q0VRF1)

Other databases:

- EMBL:   AM286690
- RefSeq:   YP_692519.1
- ProteinModelPortal:   Q0VRF1
- SMR:   Q0VRF1
- STRING:   Q0VRF1
- GeneID:   4212106
- GenomeReviews:   AM286690_GR
- KEGG:   abo:ABO_0799
- NMPDR:   fig|393595.12.peg.800
- eggNOG:   COG0806
- HOGENOM:   HBG703775
- OMA:   AYGIRGW
- PhylomeDB:   Q0VRF1
- BioCyc:   ABOR393595:ABO_0799-MONOMER
- GO:   GO:0005840
- HAMAP:   MF_00014
- InterPro:   IPR011961
- InterPro:   IPR007903
- InterPro:   IPR011033
- InterPro:   IPR002676
- InterPro:   IPR009000
- TIGRFAMs:   TIGR02273

Pfam domain/function: PF05239 PRC; PF01782 RimM; SSF50346 PRCH_cytoplasmic; SSF50447 Translat_factor

EC number: NA

Molecular weight: Translated: 21185; Mature: 21054

Theoretical pI: Translated: 5.02; Mature: 5.02

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
2.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAERGQSSSAEGGASSQLVVVGRILGVHGVKGWVKVYSYTDPMVNLQQYQPWHLKQGALN
CCCCCCCCCCCCCCCCEEEEEEEHHHHCCCCCEEEEEECCCCCCCHHHCCCCCCCCCCCC
SGGSSAAGTWKPVKVTGFRPQGKGLIAQLEGVSDREAAAALVGQDIGVPADLLPQSGQGE
CCCCCCCCCCCCEEEECCCCCCCCEEEEECCCCCHHHHHHHHCCCCCCCHHHCCCCCCCC
YYWRDLIGLRVKHVNGMDLGSVTRMVETGANDVVVVRGDRNSLDRRERLIPWLPEDVITA
CHHHHHHHEEEEECCCCCHHHHHHHHHCCCCCEEEEECCCCCHHHHHHCCCCCCHHHEEE
ISLEDGEMTVDWDPDF
EEECCCCEEEEECCCC
>Mature Secondary Structure 
AERGQSSSAEGGASSQLVVVGRILGVHGVKGWVKVYSYTDPMVNLQQYQPWHLKQGALN
CCCCCCCCCCCCCCCEEEEEEEHHHHCCCCCEEEEEECCCCCCCHHHCCCCCCCCCCCC
SGGSSAAGTWKPVKVTGFRPQGKGLIAQLEGVSDREAAAALVGQDIGVPADLLPQSGQGE
CCCCCCCCCCCCEEEECCCCCCCCEEEEECCCCCHHHHHHHHCCCCCCCHHHCCCCCCCC
YYWRDLIGLRVKHVNGMDLGSVTRMVETGANDVVVVRGDRNSLDRRERLIPWLPEDVITA
CHHHHHHHEEEEECCCCCHHHHHHHHHCCCCCEEEEECCCCCHHHHHHCCCCCCHHHEEE
ISLEDGEMTVDWDPDF
EEECCCCEEEEECCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA