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The map label for this gene is csgD [H]

Identifier: 110833650

GI number: 110833650

Start: 884460

End: 885134

Strand: Direct

Name: csgD [H]

Synonym: ABO_0789

Alternate gene names: 110833650

Gene position: 884460-885134 (Clockwise)

Preceding gene: 110833648

Following gene: 110833652

Centisome position: 28.35

GC content: 51.11

Gene sequence:

>675_bases
ATGGATGTGTCGATGGCGCACAGGACCCGTGACGAGAGTAAAGCCTATCTGGTGGTTTCGCATTGCAACAATCTTGCAAT
CCGGCTTTTAGCGAAATCAATTGAAAACCAGCGTGGCGTATCCTGCACAGCAATCAGCAGTGAAGATCTTTTCTGTGATC
AGATTCAGGATGACTTGGTTCTCATCAATGTGCTGGACTTTTCCACCCCGGAAATCGAAGGGTTGCTTGGTCGTATCCAG
GAGCACATGCCGCTGTGTCGGGTAATTCTGGTTAATGCAGATCGAGACGATAATATTTTTTTCTTGCTTAACTGGCCGGT
AGTCAAGGGGGTTATCTACCAGCAGGATAGCGACGCGCTTATTTCCAAGGCGTTGGATGAGGTCTGCAAGGGACGTAGCT
GGTTCCCGCGCAGTTACATGGATTATCTGGTCCGTCACCGCAAAACCCCGACTCGGTGTGGGCATATCTTTGAAAGCCTC
ACGAGCCGTGAAAGGCAAATGCTGGACCATGTGGTGCGAGGCATGAGCAACCACGAAATCGCTGATGCTATTTGCCTGAG
CACACATACGGTGAAGGCGCATTTGCAAAGCCTGTATCGCAAGGTGGGGGTGAAAAGCCGGGTGGGCGTGATGCGTTGGG
TGCATGAAAACCACTTGGAAGAGAGCGGAGAGTAA

Upstream 100 bases:

>100_bases
TACGACATTGGCCTGTTTGGTAATGTAGCATGGCGGCGCTTCTTAGCCCCTTGTCTATGCACTTGGGGCTAGGGACATTG
ATTGGGGAGGGTACATTGAT

Downstream 100 bases:

>100_bases
TTCTGCGTGAGAGTCATCTCCCCCCGGCGTGATTGTGTTATTGGCCCCTTTCTGGCAGATCCCGGCATAGTTTAGATCCC
AGTACCGTATCGGCTCACCA

Product: LuxR family DNA-binding response regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 224; Mature: 224

Protein sequence:

>224_residues
MDVSMAHRTRDESKAYLVVSHCNNLAIRLLAKSIENQRGVSCTAISSEDLFCDQIQDDLVLINVLDFSTPEIEGLLGRIQ
EHMPLCRVILVNADRDDNIFFLLNWPVVKGVIYQQDSDALISKALDEVCKGRSWFPRSYMDYLVRHRKTPTRCGHIFESL
TSRERQMLDHVVRGMSNHEIADAICLSTHTVKAHLQSLYRKVGVKSRVGVMRWVHENHLEESGE

Sequences:

>Translated_224_residues
MDVSMAHRTRDESKAYLVVSHCNNLAIRLLAKSIENQRGVSCTAISSEDLFCDQIQDDLVLINVLDFSTPEIEGLLGRIQ
EHMPLCRVILVNADRDDNIFFLLNWPVVKGVIYQQDSDALISKALDEVCKGRSWFPRSYMDYLVRHRKTPTRCGHIFESL
TSRERQMLDHVVRGMSNHEIADAICLSTHTVKAHLQSLYRKVGVKSRVGVMRWVHENHLEESGE
>Mature_224_residues
MDVSMAHRTRDESKAYLVVSHCNNLAIRLLAKSIENQRGVSCTAISSEDLFCDQIQDDLVLINVLDFSTPEIEGLLGRIQ
EHMPLCRVILVNADRDDNIFFLLNWPVVKGVIYQQDSDALISKALDEVCKGRSWFPRSYMDYLVRHRKTPTRCGHIFESL
TSRERQMLDHVVRGMSNHEIADAICLSTHTVKAHLQSLYRKVGVKSRVGVMRWVHENHLEESGE

Specific function: The master regulator for adhesive curli fimbriae expression; necessary for transcription of the csgBAC/ymdA operon. Plays a positive role in biofilm formation. May have the capability to respond to starvation and/or high cell density by activating csgBA t

COG id: COG2771

COG function: function code K; DNA-binding HTH domain-containing proteins

Gene ontology:

Cell location: Cytoplasmic [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH luxR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1787277, Length=132, Percent_Identity=30.3030303030303, Blast_Score=81, Evalue=7e-17,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR016032
- InterPro:   IPR000792
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00196 GerE [H]

EC number: NA

Molecular weight: Translated: 25661; Mature: 25661

Theoretical pI: Translated: 6.89; Mature: 6.89

Prosite motif: PS00622 HTH_LUXR_1 ; PS50043 HTH_LUXR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

3.1 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
6.2 %Cys+Met (Translated Protein)
3.1 %Cys     (Mature Protein)
3.1 %Met     (Mature Protein)
6.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDVSMAHRTRDESKAYLVVSHCNNLAIRLLAKSIENQRGVSCTAISSEDLFCDQIQDDLV
CCCCHHHHCCCCCCEEEEEEHHHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHCCCEE
LINVLDFSTPEIEGLLGRIQEHMPLCRVILVNADRDDNIFFLLNWPVVKGVIYQQDSDAL
EEEEECCCCCHHHHHHHHHHHCCCCEEEEEEECCCCCCEEEEEECHHHHCCCEECCCHHH
ISKALDEVCKGRSWFPRSYMDYLVRHRKTPTRCGHIFESLTSRERQMLDHVVRGMSNHEI
HHHHHHHHHCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHH
ADAICLSTHTVKAHLQSLYRKVGVKSRVGVMRWVHENHLEESGE
HHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure
MDVSMAHRTRDESKAYLVVSHCNNLAIRLLAKSIENQRGVSCTAISSEDLFCDQIQDDLV
CCCCHHHHCCCCCCEEEEEEHHHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHCCCEE
LINVLDFSTPEIEGLLGRIQEHMPLCRVILVNADRDDNIFFLLNWPVVKGVIYQQDSDAL
EEEEECCCCCHHHHHHHHHHHCCCCEEEEEEECCCCCCEEEEEECHHHHCCCEECCCHHH
ISKALDEVCKGRSWFPRSYMDYLVRHRKTPTRCGHIFESLTSRERQMLDHVVRGMSNHEI
HHHHHHHHHCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHH
ADAICLSTHTVKAHLQSLYRKVGVKSRVGVMRWVHENHLEESGE
HHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8817489; 8905232; 9278503 [H]