| Definition | Alcanivorax borkumensis SK2 chromosome, complete genome. |
|---|---|
| Accession | NC_008260 |
| Length | 3,120,143 |
Click here to switch to the map view.
The map label for this gene is 110833647
Identifier: 110833647
GI number: 110833647
Start: 882430
End: 883122
Strand: Direct
Name: 110833647
Synonym: ABO_0786
Alternate gene names: NA
Gene position: 882430-883122 (Clockwise)
Preceding gene: 110833646
Following gene: 110833648
Centisome position: 28.28
GC content: 55.27
Gene sequence:
>693_bases ATGACGAAAACCACCTATCATTTTCGAGATATTCGTGTGGCGGAAACGCCTGAGCCTTCCTCTCGTGCTCAGCTGCATCG TCAGCTGGGGCAGGAGCTCGCGGGCCTTAATGAACAGGTGCTACGCCTGGATGCATCGCAGGCCAAGTTGCAGGATTACA TTGCTCAGGTGCAACTATTGCGACAGGCATTGCAGCAGGAAGGGCAGCGCGATTACAACCAGATTCTGCAGCGCATGCTG ACCGGGGAAGCAAGTGGCGATGATGTGACCGATCTGGTGGATTTTGAAATCCTTACTGGTAAGGCGTCACCGCTTTCGCC GCCGTTGGAATTGTGGCTGGATGGCGACTGCGTGCGCGGGCGGGCCACCTTCGGTTCGGTGTTTCAGGGACCTCCAGGAC GGGTGCACGGTGGCGTGCTGGCACTGGCATTGGATATGTTGATGGCCAAGACGCAGGATTATGTTCGCCAGCTCGGCATG ACCGGTACTCTCAATATTCGCTATCTGGCGGCTACTCCGTTGAACACGCCAGTGGATTTTGAGGCCCGGTTGGTTTCTTT AGAGCGCCGTAAATTACGCTGCGAAGGCAGTGTATGGGTGAATGGTGTGCAGTCAGTGTCGGCAGAAGGTGTCTGGATTT CGGCCCAAGGTGAATATGAGTTGAAACCGGAGTGTGGTGAGTTGAAAGTGTAA
Upstream 100 bases:
>100_bases TCCGTGCACAGGCGGGTATAACTATCTTGGCTGGCATGGCGATATCCAGGCCGTCCACGCGCAAGGCATTTGGCTGATGC CTAAGAGTTTGGGGTAACGT
Downstream 100 bases:
>100_bases AACTGGAACCCGTGTTGGCGCGTAAGTTGCGCGGCATTGATTGCCGTTTGTGCTTGGGGCGCCGTTTGGCGTAACCAATG ATAATCGCGAGGAGGCCACA
Product: hypothetical protein
Products: NA
Alternate protein names: Thioesterase Family Protein; Thioesterase; Aromatic Compounds Degradation Protein PaaI
Number of amino acids: Translated: 230; Mature: 229
Protein sequence:
>230_residues MTKTTYHFRDIRVAETPEPSSRAQLHRQLGQELAGLNEQVLRLDASQAKLQDYIAQVQLLRQALQQEGQRDYNQILQRML TGEASGDDVTDLVDFEILTGKASPLSPPLELWLDGDCVRGRATFGSVFQGPPGRVHGGVLALALDMLMAKTQDYVRQLGM TGTLNIRYLAATPLNTPVDFEARLVSLERRKLRCEGSVWVNGVQSVSAEGVWISAQGEYELKPECGELKV
Sequences:
>Translated_230_residues MTKTTYHFRDIRVAETPEPSSRAQLHRQLGQELAGLNEQVLRLDASQAKLQDYIAQVQLLRQALQQEGQRDYNQILQRML TGEASGDDVTDLVDFEILTGKASPLSPPLELWLDGDCVRGRATFGSVFQGPPGRVHGGVLALALDMLMAKTQDYVRQLGM TGTLNIRYLAATPLNTPVDFEARLVSLERRKLRCEGSVWVNGVQSVSAEGVWISAQGEYELKPECGELKV >Mature_229_residues TKTTYHFRDIRVAETPEPSSRAQLHRQLGQELAGLNEQVLRLDASQAKLQDYIAQVQLLRQALQQEGQRDYNQILQRMLT GEASGDDVTDLVDFEILTGKASPLSPPLELWLDGDCVRGRATFGSVFQGPPGRVHGGVLALALDMLMAKTQDYVRQLGMT GTLNIRYLAATPLNTPVDFEARLVSLERRKLRCEGSVWVNGVQSVSAEGVWISAQGEYELKPECGELKV
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 25510; Mature: 25379
Theoretical pI: Translated: 5.13; Mature: 5.13
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.3 %Cys (Translated Protein) 2.2 %Met (Translated Protein) 3.5 %Cys+Met (Translated Protein) 1.3 %Cys (Mature Protein) 1.7 %Met (Mature Protein) 3.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTKTTYHFRDIRVAETPEPSSRAQLHRQLGQELAGLNEQVLRLDASQAKLQDYIAQVQLL CCCCEEEEEEEEECCCCCCHHHHHHHHHHHHHHHCCCHHHHHHCHHHHHHHHHHHHHHHH RQALQQEGQRDYNQILQRMLTGEASGDDVTDLVDFEILTGKASPLSPPLELWLDGDCVRG HHHHHHHCHHHHHHHHHHHHCCCCCCCCHHHHHHHEEEECCCCCCCCCCEEEECCCEECC RATFGSVFQGPPGRVHGGVLALALDMLMAKTQDYVRQLGMTGTLNIRYLAATPLNTPVDF CCCCCHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEECCCCCCCCH EARLVSLERRKLRCEGSVWVNGVQSVSAEGVWISAQGEYELKPECGELKV HHHHHHHHHHHHHCCCCCEECCHHHCCCCCEEEECCCCEEECCCCCCCCC >Mature Secondary Structure TKTTYHFRDIRVAETPEPSSRAQLHRQLGQELAGLNEQVLRLDASQAKLQDYIAQVQLL CCCEEEEEEEEECCCCCCHHHHHHHHHHHHHHHCCCHHHHHHCHHHHHHHHHHHHHHHH RQALQQEGQRDYNQILQRMLTGEASGDDVTDLVDFEILTGKASPLSPPLELWLDGDCVRG HHHHHHHCHHHHHHHHHHHHCCCCCCCCHHHHHHHEEEECCCCCCCCCCEEEECCCEECC RATFGSVFQGPPGRVHGGVLALALDMLMAKTQDYVRQLGMTGTLNIRYLAATPLNTPVDF CCCCCHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEECCCCCCCCH EARLVSLERRKLRCEGSVWVNGVQSVSAEGVWISAQGEYELKPECGELKV HHHHHHHHHHHHHCCCCCEECCHHHCCCCCEEEECCCCEEECCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA