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The map label for this gene is ydfH [H]

Identifier: 110833643

GI number: 110833643

Start: 874712

End: 875407

Strand: Direct

Name: ydfH [H]

Synonym: ABO_0782

Alternate gene names: 110833643

Gene position: 874712-875407 (Clockwise)

Preceding gene: 110833641

Following gene: 110833644

Centisome position: 28.03

GC content: 49.14

Gene sequence:

>696_bases
ATGGGTTTCAAAGCAAAAGAAAGCCTCTCTGAGCAAATTGCCCAGCATCTTGCGCAGCAGATTATTCATGGCGATATGCT
GGCGGGAGATCGCATTCAGGAACTCCGTGTGGCCGGTGAGCTTGATGTCAGCCGAGGTTCGGTCCGTGAGGCTTTATTGA
TCCTGCAGCGTCGCCAGCTTATCGACATTCTTCCTCGCCGTGGTGCCGTGGTGAAAGAGATGTCAGAGACCCATGTGCGT
AATCTGTATGAAGTCATGCAGGTGCTGCTGGGTTTAGTGATTCGAAAGGCTATTAAAGTGGTTCGAGAAGAAGATATGGA
TTCTTTCATCGAACTGGTCCACGGGTTACAGGTGGAGGCTGAAGAGCGGGATTATGATGCTTTTTTTACTCTTAGTTTTC
GTTTCCTGGAGCATCTTTATCCATTCGCGCGTAATGTTTTTGTGGAAGATGTGTTGATTAACATGCAGCCAGCTATGCAG
CGGGCTTACTTCATGGCGTTGCATTTGGAGCCTGATGAAATAAAGGAGTGTTTGTCGTTCTTTAAGGCGTTGGTGGAAAC
TATTTTTCGCCGTGATGTACGCTCGGCGCTGGAAATTATTCGGGAATTTGCAGAGCATCAGTCGGAGCTGGTGGAAGAGT
CCATCACCCGTGCTCGGCAGATTGAAACCGCCTGGGGTTCGCGACGTCGTAAGTAA

Upstream 100 bases:

>100_bases
GGTGGGTGAGGGTCAGTAAAGCCTGCACTTGGTGGCGGTTTTTTTGTGTACTATAGTCAGACAAAATGGACTGAATTGTT
CAACAGGTACCGGGGGTTCG

Downstream 100 bases:

>100_bases
TTACTCCTCATTGTGTTGTGGATATTTGGCTGATGGCCGGTAATCTGCAACGGGGGTCTTGCCCTGACGGATCAAGCTGC
ATAGAATTGCCACCCTCTTT

Product: GntR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 231; Mature: 230

Protein sequence:

>231_residues
MGFKAKESLSEQIAQHLAQQIIHGDMLAGDRIQELRVAGELDVSRGSVREALLILQRRQLIDILPRRGAVVKEMSETHVR
NLYEVMQVLLGLVIRKAIKVVREEDMDSFIELVHGLQVEAEERDYDAFFTLSFRFLEHLYPFARNVFVEDVLINMQPAMQ
RAYFMALHLEPDEIKECLSFFKALVETIFRRDVRSALEIIREFAEHQSELVEESITRARQIETAWGSRRRK

Sequences:

>Translated_231_residues
MGFKAKESLSEQIAQHLAQQIIHGDMLAGDRIQELRVAGELDVSRGSVREALLILQRRQLIDILPRRGAVVKEMSETHVR
NLYEVMQVLLGLVIRKAIKVVREEDMDSFIELVHGLQVEAEERDYDAFFTLSFRFLEHLYPFARNVFVEDVLINMQPAMQ
RAYFMALHLEPDEIKECLSFFKALVETIFRRDVRSALEIIREFAEHQSELVEESITRARQIETAWGSRRRK
>Mature_230_residues
GFKAKESLSEQIAQHLAQQIIHGDMLAGDRIQELRVAGELDVSRGSVREALLILQRRQLIDILPRRGAVVKEMSETHVRN
LYEVMQVLLGLVIRKAIKVVREEDMDSFIELVHGLQVEAEERDYDAFFTLSFRFLEHLYPFARNVFVEDVLINMQPAMQR
AYFMALHLEPDEIKECLSFFKALVETIFRRDVRSALEIIREFAEHQSELVEESITRARQIETAWGSRRRK

Specific function: Unknown

COG id: COG1802

COG function: function code K; Transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH gntR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1787821, Length=228, Percent_Identity=27.1929824561404, Blast_Score=79, Evalue=3e-16,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011711
- InterPro:   IPR000524
- InterPro:   IPR011991 [H]

Pfam domain/function: PF07729 FCD; PF00392 GntR [H]

EC number: NA

Molecular weight: Translated: 26970; Mature: 26838

Theoretical pI: Translated: 5.93; Mature: 5.93

Prosite motif: PS50949 HTH_GNTR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
3.5 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGFKAKESLSEQIAQHLAQQIIHGDMLAGDRIQELRVAGELDVSRGSVREALLILQRRQL
CCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHH
IDILPRRGAVVKEMSETHVRNLYEVMQVLLGLVIRKAIKVVREEDMDSFIELVHGLQVEA
HHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
EERDYDAFFTLSFRFLEHLYPFARNVFVEDVLINMQPAMQRAYFMALHLEPDEIKECLSF
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCHHHHHHHHHH
FKALVETIFRRDVRSALEIIREFAEHQSELVEESITRARQIETAWGSRRRK
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
>Mature Secondary Structure 
GFKAKESLSEQIAQHLAQQIIHGDMLAGDRIQELRVAGELDVSRGSVREALLILQRRQL
CCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHH
IDILPRRGAVVKEMSETHVRNLYEVMQVLLGLVIRKAIKVVREEDMDSFIELVHGLQVEA
HHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
EERDYDAFFTLSFRFLEHLYPFARNVFVEDVLINMQPAMQRAYFMALHLEPDEIKECLSF
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCHHHHHHHHHH
FKALVETIFRRDVRSALEIIREFAEHQSELVEESITRARQIETAWGSRRRK
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]