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The map label for this gene is sodB [H]

Identifier: 110833510

GI number: 110833510

Start: 719296

End: 719883

Strand: Direct

Name: sodB [H]

Synonym: ABO_0649

Alternate gene names: 110833510

Gene position: 719296-719883 (Clockwise)

Preceding gene: 110833506

Following gene: 110833511

Centisome position: 23.05

GC content: 53.06

Gene sequence:

>588_bases
ATGGCTTTTGAATTACCGCCGCTTCCGTTCGAGAAAAATGCACTGGAACCGCATATTTCTGCCGAGACGCTTGAGTACCA
CCATGGCAAGCACCACAACGCTTACGTGACCAAGCTGAACGACATGGTTGCCGGCACAGACAATGAAGGCAAATCCCTGG
AAGAAATCATCAAGAGCGCCGAAGGCGGTCTGTTCAACCAGGCAGCGCAGGTGTGGAACCACACGTTTTACTGGAACAGC
CTGAGCCCCAATGGCGGCGGCGCTCCTAGTGGTGATCTGGGCGCAGCCATCGACAAGGCATTTGGCTCTTTCGACGAGTT
CAAAGACCAATTTAATGCTAAAGCGACGGGCAATTTCGGTTCCGGCTGGACATGGCTGGTAAAAAACAGTGATGGCAGCT
TGGAAATCGTTAACACTGACGACGCGGACACTCCCATTGCCCACGGCAAGGGCCAAACCCCGCTGTTCACCGTAGATGTT
TGGGAACACGCGTATTACGTGGACTACCGCAATGCCCGTCCTAAGTATCTGGAGTCCATCTGGAACCTGATTAACTGGGA
TTTCGCCGCTAGCAACTTTGCTGCTTAA

Upstream 100 bases:

>100_bases
GGCCGTAGACGACCGGCAGGTTGTCTGCGGGGAATTTCTGCCCGTTGTTGTGAGCAAGCAGCTGTGAGCAATGGGACAAC
ATGATGTCAGGGGACAAATT

Downstream 100 bases:

>100_bases
ACCCGATAGGGTAAGCCTGATGGTGCTGTCAAAGGTACCATTTGAATTACAAAAAAGGCCGCTTTTGCGGCCTTTTTTGT
GTCTGTATAGGTGGCCATTT

Product: superoxide dismutase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 195; Mature: 194

Protein sequence:

>195_residues
MAFELPPLPFEKNALEPHISAETLEYHHGKHHNAYVTKLNDMVAGTDNEGKSLEEIIKSAEGGLFNQAAQVWNHTFYWNS
LSPNGGGAPSGDLGAAIDKAFGSFDEFKDQFNAKATGNFGSGWTWLVKNSDGSLEIVNTDDADTPIAHGKGQTPLFTVDV
WEHAYYVDYRNARPKYLESIWNLINWDFAASNFAA

Sequences:

>Translated_195_residues
MAFELPPLPFEKNALEPHISAETLEYHHGKHHNAYVTKLNDMVAGTDNEGKSLEEIIKSAEGGLFNQAAQVWNHTFYWNS
LSPNGGGAPSGDLGAAIDKAFGSFDEFKDQFNAKATGNFGSGWTWLVKNSDGSLEIVNTDDADTPIAHGKGQTPLFTVDV
WEHAYYVDYRNARPKYLESIWNLINWDFAASNFAA
>Mature_194_residues
AFELPPLPFEKNALEPHISAETLEYHHGKHHNAYVTKLNDMVAGTDNEGKSLEEIIKSAEGGLFNQAAQVWNHTFYWNSL
SPNGGGAPSGDLGAAIDKAFGSFDEFKDQFNAKATGNFGSGWTWLVKNSDGSLEIVNTDDADTPIAHGKGQTPLFTVDVW
EHAYYVDYRNARPKYLESIWNLINWDFAASNFAA

Specific function: Destroys radicals which are normally produced within the cells and which are toxic to biological systems [H]

COG id: COG0605

COG function: function code P; Superoxide dismutase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the iron/manganese superoxide dismutase family [H]

Homologues:

Organism=Homo sapiens, GI67782307, Length=200, Percent_Identity=43, Blast_Score=166, Evalue=1e-41,
Organism=Homo sapiens, GI67782305, Length=200, Percent_Identity=43, Blast_Score=166, Evalue=1e-41,
Organism=Homo sapiens, GI67782309, Length=192, Percent_Identity=38.5416666666667, Blast_Score=130, Evalue=6e-31,
Organism=Escherichia coli, GI1787946, Length=195, Percent_Identity=66.6666666666667, Blast_Score=278, Evalue=2e-76,
Organism=Escherichia coli, GI1790342, Length=207, Percent_Identity=39.1304347826087, Blast_Score=152, Evalue=1e-38,
Organism=Caenorhabditis elegans, GI17506561, Length=198, Percent_Identity=37.8787878787879, Blast_Score=137, Evalue=4e-33,
Organism=Caenorhabditis elegans, GI17569479, Length=194, Percent_Identity=38.659793814433, Blast_Score=128, Evalue=2e-30,
Organism=Saccharomyces cerevisiae, GI6321796, Length=211, Percent_Identity=36.9668246445498, Blast_Score=127, Evalue=1e-30,
Organism=Drosophila melanogaster, GI17136812, Length=193, Percent_Identity=40.9326424870466, Blast_Score=145, Evalue=2e-35,

Paralogues:

None

Copy number: 2020 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 20 Molecules/Cell In: Stationary Phase, Rich Media (Based on E. coli). 900 Molecules/Cell In: Stationary Phase, Rich Media (Based on E. coli). [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001189
- InterPro:   IPR019833
- InterPro:   IPR019832
- InterPro:   IPR019831 [H]

Pfam domain/function: PF02777 Sod_Fe_C; PF00081 Sod_Fe_N [H]

EC number: =1.15.1.1 [H]

Molecular weight: Translated: 21571; Mature: 21440

Theoretical pI: Translated: 4.63; Mature: 4.63

Prosite motif: PS00088 SOD_MN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.0 %Met     (Translated Protein)
1.0 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
0.5 %Met     (Mature Protein)
0.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAFELPPLPFEKNALEPHISAETLEYHHGKHHNAYVTKLNDMVAGTDNEGKSLEEIIKSA
CCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCEEEEEHHHHHCCCCCCCHHHHHHHHHH
EGGLFNQAAQVWNHTFYWNSLSPNGGGAPSGDLGAAIDKAFGSFDEFKDQFNAKATGNFG
CCCHHHHHHHHHCCEEEECCCCCCCCCCCCCCHHHHHHHHHCCHHHHHHHCCCCCCCCCC
SGWTWLVKNSDGSLEIVNTDDADTPIAHGKGQTPLFTVDVWEHAYYVDYRNARPKYLESI
CCEEEEEECCCCCEEEEECCCCCCCCCCCCCCCCEEEEEECCCEEEEECCCCCHHHHHHH
WNLINWDFAASNFAA
HHHHCCCCCCCCCCC
>Mature Secondary Structure 
AFELPPLPFEKNALEPHISAETLEYHHGKHHNAYVTKLNDMVAGTDNEGKSLEEIIKSA
CCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCEEEEEHHHHHCCCCCCCHHHHHHHHHH
EGGLFNQAAQVWNHTFYWNSLSPNGGGAPSGDLGAAIDKAFGSFDEFKDQFNAKATGNFG
CCCHHHHHHHHHCCEEEECCCCCCCCCCCCCCHHHHHHHHHCCHHHHHHHCCCCCCCCCC
SGWTWLVKNSDGSLEIVNTDDADTPIAHGKGQTPLFTVDVWEHAYYVDYRNARPKYLESI
CCEEEEEECCCCCEEEEECCCCCCCCCCCCCCCCEEEEEECCCEEEEECCCCCHHHHHHH
WNLINWDFAASNFAA
HHHHCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 3542995 [H]