| Definition | Alcanivorax borkumensis SK2 chromosome, complete genome. |
|---|---|
| Accession | NC_008260 |
| Length | 3,120,143 |
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The map label for this gene is murC
Identifier: 110833460
GI number: 110833460
Start: 657047
End: 658471
Strand: Direct
Name: murC
Synonym: ABO_0599
Alternate gene names: 110833460
Gene position: 657047-658471 (Clockwise)
Preceding gene: 110833459
Following gene: 110833461
Centisome position: 21.06
GC content: 59.51
Gene sequence:
>1425_bases ATGGCCGATAACGACATTATTCATACGGTGCCGGAGATGCGCCGCATTCGCGGTATCCACTTTGTGGGTATCGGCGGTGT GGGCATGTGCGGCATTGCGGAAGTGCTGGCCAACCAGGGTTATGCCATCAGCGGCAGCGACATTAAGGAATCGCCGGTGC TAGAGCGTCTGCGCAGCCTGGGTGTGAGAGTGGACATTGGCCACCGTGCCGAGAATATCGATGGTGCAGATGTGGTGGTG ACCTCCACCGCGGTGAATACCGAGAACCTGGAAGTGGCGGCGGCCCACGAGCGCCGTATTCCGGTGGTGCCACGGGCTCA GATGTTGGCGGAGTTAATGCGCTTTCGTCACGGTATCGCGGTGGCCGGCACCCACGGCAAGACCACCACTACGTCATTAA CCGCAGCGATCATGGCGGAGGCAGGGCTGGACCCGACCTTTGTGATTGGTGGCCGTTTGAATAGCGCGGGCACCAATGCG CGCCTGGGACAGAGCCGTTATCTGGTGGCGGAAGCGGATGAGTCCGATGCCAGTTTCCTGCACTTGCAGCCCATGAGCGC CATCGTCACTAATGTTGATGCGGATCACATGCACACCTACGGCGGCGATTTCGCTCAGCTGGAGAATACCTTTATCGAGT TTCTTCACAACCTGCCGTTCTACGGTGTGGCGGTGATGTGTGTGGATGATCCGGTGGTGCGCAAGCTGCTGCCCCGGGTC AATCGTCAGGTGATTCGATATGGCTTCAGCGAGGATGCAGACCTACGTGCGGAGAACGTGCGTCAGGACGGCATGGTGAC TCATTTCCGGGTGGTGCGCGCGGAAGGCGAGCCCCTGGACGTGTCGCTAAATATGCCCGGACGCCATAACGTGCTTAATG CGCTGGCCGCTATTGCGGTGTCGGCGGATGAGGGTGCGGGCGACGAGGCCATTATCCGTGGCCTGAACAACTTTACCGGA GTGGGACGTCGCTTTGACGTGCAAGGCGATTATCACTTTGACGGCGGCAGCGCGACGCTGGTGGATGACTACGGTCACCA TCCCCGTGAGGTGGCTGCCACCATTGATGCCATTCGTGAAGGCTGGCCGGGCCGTCGCCTAGCCATGCTGTTTCAGCCTC ACCGTTATACCCGTACCCAAGACCTTTACGAGGACTTCGTGGAAGTATTGTCCGGTGTGGATGTATTGCTGATGTTAGAA GTGTATGCCGCTGGGGAAGAACCGATTCCCGGTGCTGACGCCCGTGCTTTGTGTCGCAGTCTGCGCAAGCGCGGGCTGGA GCCTGTGTTTGTGGATGACCCGGACAAGCTGCAAGGCTTGTTGGCCAGCCAGCTTCAGAATGGCGATCTGCTCGTCACCC AAGGCGCGGGTAATGTCGGTGCCATCGCCAAGCAGTTGGTTGCTCAGGGAGGCGGCCATGGATAA
Upstream 100 bases:
>100_bases GCAGAGCGTGGCCTGTTGGCGCAAATCGCCGAGCGGGCCCGTGAGCAGGCGATGGCGGATAGTGCAGAGCGCGCCGCCAC GCTGTGTGAGGAGGTGGCCA
Downstream 100 bases:
>100_bases GCGTGCATTGAAAGAACGATTGAGCCGAGTAGGCCGCGTGGCAGTGCTGGCTGGTGGTCGATCTGCAGAACGCGCTGTGT CGCTGAAGAGCGGTGCTGCG
Product: UDP-N-acetylmuramate--L-alanine ligase
Products: NA
Alternate protein names: UDP-N-acetylmuramoyl-L-alanine synthetase
Number of amino acids: Translated: 474; Mature: 473
Protein sequence:
>474_residues MADNDIIHTVPEMRRIRGIHFVGIGGVGMCGIAEVLANQGYAISGSDIKESPVLERLRSLGVRVDIGHRAENIDGADVVV TSTAVNTENLEVAAAHERRIPVVPRAQMLAELMRFRHGIAVAGTHGKTTTTSLTAAIMAEAGLDPTFVIGGRLNSAGTNA RLGQSRYLVAEADESDASFLHLQPMSAIVTNVDADHMHTYGGDFAQLENTFIEFLHNLPFYGVAVMCVDDPVVRKLLPRV NRQVIRYGFSEDADLRAENVRQDGMVTHFRVVRAEGEPLDVSLNMPGRHNVLNALAAIAVSADEGAGDEAIIRGLNNFTG VGRRFDVQGDYHFDGGSATLVDDYGHHPREVAATIDAIREGWPGRRLAMLFQPHRYTRTQDLYEDFVEVLSGVDVLLMLE VYAAGEEPIPGADARALCRSLRKRGLEPVFVDDPDKLQGLLASQLQNGDLLVTQGAGNVGAIAKQLVAQGGGHG
Sequences:
>Translated_474_residues MADNDIIHTVPEMRRIRGIHFVGIGGVGMCGIAEVLANQGYAISGSDIKESPVLERLRSLGVRVDIGHRAENIDGADVVV TSTAVNTENLEVAAAHERRIPVVPRAQMLAELMRFRHGIAVAGTHGKTTTTSLTAAIMAEAGLDPTFVIGGRLNSAGTNA RLGQSRYLVAEADESDASFLHLQPMSAIVTNVDADHMHTYGGDFAQLENTFIEFLHNLPFYGVAVMCVDDPVVRKLLPRV NRQVIRYGFSEDADLRAENVRQDGMVTHFRVVRAEGEPLDVSLNMPGRHNVLNALAAIAVSADEGAGDEAIIRGLNNFTG VGRRFDVQGDYHFDGGSATLVDDYGHHPREVAATIDAIREGWPGRRLAMLFQPHRYTRTQDLYEDFVEVLSGVDVLLMLE VYAAGEEPIPGADARALCRSLRKRGLEPVFVDDPDKLQGLLASQLQNGDLLVTQGAGNVGAIAKQLVAQGGGHG >Mature_473_residues ADNDIIHTVPEMRRIRGIHFVGIGGVGMCGIAEVLANQGYAISGSDIKESPVLERLRSLGVRVDIGHRAENIDGADVVVT STAVNTENLEVAAAHERRIPVVPRAQMLAELMRFRHGIAVAGTHGKTTTTSLTAAIMAEAGLDPTFVIGGRLNSAGTNAR LGQSRYLVAEADESDASFLHLQPMSAIVTNVDADHMHTYGGDFAQLENTFIEFLHNLPFYGVAVMCVDDPVVRKLLPRVN RQVIRYGFSEDADLRAENVRQDGMVTHFRVVRAEGEPLDVSLNMPGRHNVLNALAAIAVSADEGAGDEAIIRGLNNFTGV GRRFDVQGDYHFDGGSATLVDDYGHHPREVAATIDAIREGWPGRRLAMLFQPHRYTRTQDLYEDFVEVLSGVDVLLMLEV YAAGEEPIPGADARALCRSLRKRGLEPVFVDDPDKLQGLLASQLQNGDLLVTQGAGNVGAIAKQLVAQGGGHG
Specific function: Cell wall formation
COG id: COG0773
COG function: function code M; UDP-N-acetylmuramate-alanine ligase
Gene ontology:
Cell location: Cytoplasm
Metaboloic importance: Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the MurCDEF family
Homologues:
Organism=Escherichia coli, GI1786279, Length=463, Percent_Identity=63.4989200863931, Blast_Score=554, Evalue=1e-159, Organism=Escherichia coli, GI1790680, Length=465, Percent_Identity=26.8817204301075, Blast_Score=142, Evalue=4e-35,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): MURC_ALCBS (Q0VS01)
Other databases:
- EMBL: AM286690 - RefSeq: YP_692319.1 - ProteinModelPortal: Q0VS01 - SMR: Q0VS01 - STRING: Q0VS01 - GeneID: 4211241 - GenomeReviews: AM286690_GR - KEGG: abo:ABO_0599 - NMPDR: fig|393595.12.peg.597 - eggNOG: COG0773 - HOGENOM: HBG476594 - OMA: YQPHRYS - PhylomeDB: Q0VS01 - BioCyc: ABOR393595:ABO_0599-MONOMER - GO: GO:0005737 - HAMAP: MF_00046 - InterPro: IPR004101 - InterPro: IPR013221 - InterPro: IPR000713 - InterPro: IPR016040 - InterPro: IPR005758 - Gene3D: G3DSA:3.90.190.20 - Gene3D: G3DSA:3.40.1190.10 - Gene3D: G3DSA:3.40.50.720 - TIGRFAMs: TIGR01082
Pfam domain/function: PF01225 Mur_ligase; PF02875 Mur_ligase_C; PF08245 Mur_ligase_M; SSF53244 Mur_ligase_C; SSF53623 Mur_ligase_cen
EC number: =6.3.2.8
Molecular weight: Translated: 51162; Mature: 51030
Theoretical pI: Translated: 5.30; Mature: 5.30
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.6 %Cys (Translated Protein) 2.7 %Met (Translated Protein) 3.4 %Cys+Met (Translated Protein) 0.6 %Cys (Mature Protein) 2.5 %Met (Mature Protein) 3.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MADNDIIHTVPEMRRIRGIHFVGIGGVGMCGIAEVLANQGYAISGSDIKESPVLERLRSL CCCCCHHHHHHHHHHHCCEEEEEECCCCHHHHHHHHHCCCEEECCCCCCCCHHHHHHHHC GVRVDIGHRAENIDGADVVVTSTAVNTENLEVAAAHERRIPVVPRAQMLAELMRFRHGIA CCEEEECCCCCCCCCCCEEEEEEEECCCCEEEEECCCCCCCCCCHHHHHHHHHHHHCCEE VAGTHGKTTTTSLTAAIMAEAGLDPTFVIGGRLNSAGTNARLGQSRYLVAEADESDASFL EEECCCCCCHHHHHHHHHHHCCCCCEEEECCCCCCCCCCCCCCCCEEEEEECCCCCCCEE HLQPMSAIVTNVDADHMHTYGGDFAQLENTFIEFLHNLPFYGVAVMCVDDPVVRKLLPRV EECHHHHHHHCCCHHHHHHCCCCHHHHHHHHHHHHHCCCCHHEEEEEECCHHHHHHHHHH NRQVIRYGFSEDADLRAENVRQDGMVTHFRVVRAEGEPLDVSLNMPGRHNVLNALAAIAV HHHHHHCCCCCCCCCCHHHHCCCCCEEEEEEEEECCCCEEEEECCCCCHHHHHHHHHHEE SADEGAGDEAIIRGLNNFTGVGRRFDVQGDYHFDGGSATLVDDYGHHPREVAATIDAIRE ECCCCCCHHHHHHHCHHHCCCCCEEECCCCEEECCCCEEEECCCCCCHHHHHHHHHHHHC GWPGRRLAMLFQPHRYTRTQDLYEDFVEVLSGVDVLLMLEVYAAGEEPIPGADARALCRS CCCCCEEEEEECCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCCCCCCHHHHHHH LRKRGLEPVFVDDPDKLQGLLASQLQNGDLLVTQGAGNVGAIAKQLVAQGGGHG HHHCCCCEEECCCHHHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHHCCCCCC >Mature Secondary Structure ADNDIIHTVPEMRRIRGIHFVGIGGVGMCGIAEVLANQGYAISGSDIKESPVLERLRSL CCCCHHHHHHHHHHHCCEEEEEECCCCHHHHHHHHHCCCEEECCCCCCCCHHHHHHHHC GVRVDIGHRAENIDGADVVVTSTAVNTENLEVAAAHERRIPVVPRAQMLAELMRFRHGIA CCEEEECCCCCCCCCCCEEEEEEEECCCCEEEEECCCCCCCCCCHHHHHHHHHHHHCCEE VAGTHGKTTTTSLTAAIMAEAGLDPTFVIGGRLNSAGTNARLGQSRYLVAEADESDASFL EEECCCCCCHHHHHHHHHHHCCCCCEEEECCCCCCCCCCCCCCCCEEEEEECCCCCCCEE HLQPMSAIVTNVDADHMHTYGGDFAQLENTFIEFLHNLPFYGVAVMCVDDPVVRKLLPRV EECHHHHHHHCCCHHHHHHCCCCHHHHHHHHHHHHHCCCCHHEEEEEECCHHHHHHHHHH NRQVIRYGFSEDADLRAENVRQDGMVTHFRVVRAEGEPLDVSLNMPGRHNVLNALAAIAV HHHHHHCCCCCCCCCCHHHHCCCCCEEEEEEEEECCCCEEEEECCCCCHHHHHHHHHHEE SADEGAGDEAIIRGLNNFTGVGRRFDVQGDYHFDGGSATLVDDYGHHPREVAATIDAIRE ECCCCCCHHHHHHHCHHHCCCCCEEECCCCEEECCCCEEEECCCCCCHHHHHHHHHHHHC GWPGRRLAMLFQPHRYTRTQDLYEDFVEVLSGVDVLLMLEVYAAGEEPIPGADARALCRS CCCCCEEEEEECCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCCCCCCHHHHHHH LRKRGLEPVFVDDPDKLQGLLASQLQNGDLLVTQGAGNVGAIAKQLVAQGGGHG HHHCCCCEEECCCHHHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHHCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA