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The map label for this gene is lptF [H]

Identifier: 110833357

GI number: 110833357

Start: 545842

End: 546948

Strand: Direct

Name: lptF [H]

Synonym: ABO_0496

Alternate gene names: 110833357

Gene position: 545842-546948 (Clockwise)

Preceding gene: 110833351

Following gene: 110833358

Centisome position: 17.49

GC content: 53.57

Gene sequence:

>1107_bases
TTGATTCTTCATCGATATATTAACCGGCAAGTGTTTATGACCACAGTGCTGGTCACCTTTATTCTAGTAATGGTGCTGGT
CAGTGGCCGCTTTATCAAATATTTAGCAGAGGCCGCCGCCGGTCAAATCGCTGCCGATGCTTTGTTCCTAGTGATGGCAT
TCCGAATGCCGGAATTTCTGCAAATGATCGTTCCCTTAAGTTTGTATGTCGCCCTGTTGTTGGTGTTGGGGCGTATGCAC
ATGGATAACGAAATGGTGGTGTTACAGGCCGGAGGGCAGGGCAATGGCCGTGTGGTGCGCTCGTTGGTGGTGCCCATATT
GATGGCCACCATGCTGGTAGGCATGTTTTCACTCTATGTGACCCCGCGGGGGGACGCAGAAGTAAACCGGATTTTTGAAG
AACAAAAGGACCGGTCGGTGCTGGAATTGCTCACCCCGGGCCGTTTTCACGTAAAAGGCTCCAGTGATTCCCAGCGTGCT
ACTTACGCGGAGCATTTGAACCGGGAAAAAGGCGTGCTGGAAAATGTGTTTGTGGCCGATGCGCGTTTTGAAAGCCAAGG
TGGGGCAGGAAGGTTGTTAACTGTCTGGGCGAAAAGCGGCAAGCTGGTGGTGGAAGATGGCATCAGTTATCTGCTGCTGA
CCGATGGTCTTCAGTATCAGGGTAAGCCCGGGCAGCTGGATTATAAGGAAGTGGGATTCAAGGAAGCCCGGGTTCGTATT
GGTGGCGAAAAAACCGATAGTCGTCCGCCCAAGGTGCGTGGCCGCTCCACCCAAGAATTGATGGAGCAGCAGGCCGACAA
CAAAGAGGCACTGGCTGAACTGCAGTGGCGCATCTCGCTAATCCTCACCGTTCCGATCATGGCATTGGCGGCGATCCCCT
TGGCGAGGGTTAATCCCCGACAAGGGCGTTTCTATCGATTAATTCCGGCCGTATTAGGTTACATGCTTTATGTGGGCATG
TTGCTGGTATGCCGCAGTGCCATTGAAGATCACAAGGGGGTGCTGCCCTGGTACTTGAGCATGGTCTGGATCCATGTGAG
TGCGGGGCTAGTTGTCTTCCTCCTTTATTTCGGCGCTCGCCTATTCCGGCGGAGGGCGCGCCCATGA

Upstream 100 bases:

>100_bases
GCAGGCGTTTTTGCCCGGCGGTGTGTGCCGCGCTGCGGGCCACCTGCCTGCCTTTATTCTGCTCGGCACGTTTTGCAGAC
AGCAATGAGTGGGCCTTCCT

Downstream 100 bases:

>100_bases
AATTGCTCAAGCGTTACTTTTGGCGGGCGGTGATGATTCCGACCTTGGCCATTCTGTTTATTATCGTCGGGCTGGATTGT
TTGTTCGGCTTTATCTATGA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 368; Mature: 368

Protein sequence:

>368_residues
MILHRYINRQVFMTTVLVTFILVMVLVSGRFIKYLAEAAAGQIAADALFLVMAFRMPEFLQMIVPLSLYVALLLVLGRMH
MDNEMVVLQAGGQGNGRVVRSLVVPILMATMLVGMFSLYVTPRGDAEVNRIFEEQKDRSVLELLTPGRFHVKGSSDSQRA
TYAEHLNREKGVLENVFVADARFESQGGAGRLLTVWAKSGKLVVEDGISYLLLTDGLQYQGKPGQLDYKEVGFKEARVRI
GGEKTDSRPPKVRGRSTQELMEQQADNKEALAELQWRISLILTVPIMALAAIPLARVNPRQGRFYRLIPAVLGYMLYVGM
LLVCRSAIEDHKGVLPWYLSMVWIHVSAGLVVFLLYFGARLFRRRARP

Sequences:

>Translated_368_residues
MILHRYINRQVFMTTVLVTFILVMVLVSGRFIKYLAEAAAGQIAADALFLVMAFRMPEFLQMIVPLSLYVALLLVLGRMH
MDNEMVVLQAGGQGNGRVVRSLVVPILMATMLVGMFSLYVTPRGDAEVNRIFEEQKDRSVLELLTPGRFHVKGSSDSQRA
TYAEHLNREKGVLENVFVADARFESQGGAGRLLTVWAKSGKLVVEDGISYLLLTDGLQYQGKPGQLDYKEVGFKEARVRI
GGEKTDSRPPKVRGRSTQELMEQQADNKEALAELQWRISLILTVPIMALAAIPLARVNPRQGRFYRLIPAVLGYMLYVGM
LLVCRSAIEDHKGVLPWYLSMVWIHVSAGLVVFLLYFGARLFRRRARP
>Mature_368_residues
MILHRYINRQVFMTTVLVTFILVMVLVSGRFIKYLAEAAAGQIAADALFLVMAFRMPEFLQMIVPLSLYVALLLVLGRMH
MDNEMVVLQAGGQGNGRVVRSLVVPILMATMLVGMFSLYVTPRGDAEVNRIFEEQKDRSVLELLTPGRFHVKGSSDSQRA
TYAEHLNREKGVLENVFVADARFESQGGAGRLLTVWAKSGKLVVEDGISYLLLTDGLQYQGKPGQLDYKEVGFKEARVRI
GGEKTDSRPPKVRGRSTQELMEQQADNKEALAELQWRISLILTVPIMALAAIPLARVNPRQGRFYRLIPAVLGYMLYVGM
LLVCRSAIEDHKGVLPWYLSMVWIHVSAGLVVFLLYFGARLFRRRARP

Specific function: Part of the ABC transporter complex lptBFG involved in the translocation of lipopolysaccharide (LPS) from the inner membrane to the outer membrane [H]

COG id: COG0795

COG function: function code R; Predicted permeases

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the lptF/lptG family [H]

Homologues:

Organism=Escherichia coli, GI1790712, Length=318, Percent_Identity=27.3584905660377, Blast_Score=112, Evalue=5e-26,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005495 [H]

Pfam domain/function: PF03739 YjgP_YjgQ [H]

EC number: NA

Molecular weight: Translated: 41346; Mature: 41346

Theoretical pI: Translated: 10.20; Mature: 10.20

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
4.6 %Met     (Translated Protein)
4.9 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
4.6 %Met     (Mature Protein)
4.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MILHRYINRQVFMTTVLVTFILVMVLVSGRFIKYLAEAAAGQIAADALFLVMAFRMPEFL
CCHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHH
QMIVPLSLYVALLLVLGRMHMDNEMVVLQAGGQGNGRVVRSLVVPILMATMLVGMFSLYV
HHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHC
TPRGDAEVNRIFEEQKDRSVLELLTPGRFHVKGSSDSQRATYAEHLNREKGVLENVFVAD
CCCCCHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHCHHCCHHHHHHHHC
ARFESQGGAGRLLTVWAKSGKLVVEDGISYLLLTDGLQYQGKPGQLDYKEVGFKEARVRI
CCCCCCCCCCCEEEEEECCCCEEEECCCCEEEEECCCCCCCCCCCCCHHHHCCHHHHEEE
GGEKTDSRPPKVRGRSTQELMEQQADNKEALAELQWRISLILTVPIMALAAIPLARVNPR
CCCCCCCCCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHCCCCC
QGRFYRLIPAVLGYMLYVGMLLVCRSAIEDHKGVLPWYLSMVWIHVSAGLVVFLLYFGAR
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
LFRRRARP
HHHHCCCC
>Mature Secondary Structure
MILHRYINRQVFMTTVLVTFILVMVLVSGRFIKYLAEAAAGQIAADALFLVMAFRMPEFL
CCHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHH
QMIVPLSLYVALLLVLGRMHMDNEMVVLQAGGQGNGRVVRSLVVPILMATMLVGMFSLYV
HHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHC
TPRGDAEVNRIFEEQKDRSVLELLTPGRFHVKGSSDSQRATYAEHLNREKGVLENVFVAD
CCCCCHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHCHHCCHHHHHHHHC
ARFESQGGAGRLLTVWAKSGKLVVEDGISYLLLTDGLQYQGKPGQLDYKEVGFKEARVRI
CCCCCCCCCCCEEEEEECCCCEEEECCCCEEEEECCCCCCCCCCCCCHHHHCCHHHHEEE
GGEKTDSRPPKVRGRSTQELMEQQADNKEALAELQWRISLILTVPIMALAAIPLARVNPR
CCCCCCCCCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHCCCCC
QGRFYRLIPAVLGYMLYVGMLLVCRSAIEDHKGVLPWYLSMVWIHVSAGLVVFLLYFGAR
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
LFRRRARP
HHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]