| Definition | Alcanivorax borkumensis SK2 chromosome, complete genome. |
|---|---|
| Accession | NC_008260 |
| Length | 3,120,143 |
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The map label for this gene is 110833302
Identifier: 110833302
GI number: 110833302
Start: 481212
End: 482573
Strand: Direct
Name: 110833302
Synonym: ABO_0441
Alternate gene names: NA
Gene position: 481212-482573 (Clockwise)
Preceding gene: 110833301
Following gene: 110833304
Centisome position: 15.42
GC content: 55.87
Gene sequence:
>1362_bases ATGCCAACCCGTCGCCTTTCTGAATTTGTGCAGGCCCTGCGTGGTGCAGGGTTACGGATTTCGCCGGATGAAGCGACCCA GGCTATGGATGCCGCTGCGTTGGTGGGCTACCAGGGCCGACAACGTTTTCATGATGCCCTGGCGATGACGTTGGTGAAGC AGGAAGAGGACCGCTCGGCCTTCGAGGAGACCTTTGCGCGTTTTTTTGCGGTGACGTCTGATGTTCGCTCTGGCTTATCA TCGCAGAGCGCACCGCGTGCCATGCCGGCTGCGGTGAACGAGGCTGGCGAAACGAGCGAGAAGGGTCGGACAGAGGAGGT ATTTGCTGATCTGACCACCCAAACCCCTGCCCAATTGGATCAACGCCTTGCCGAAGCTGCGGCGCGAATGGATTTCACTC AGATGGAAGTGATTACCCAGCAAGGACTGTATACCCGTCGATTACTGATGAACATGGGCATGGGGGCTGTGGATGATCGT ATTCTAGAGCTGGATAAAGGGGGAGATCTTTGTCTGGCTCGGGCGGAAACACTGCGGCAATGGAGGCAGGAGGTTCGTGA GCAAGCAGCCGACCATGTGCGACGGCAATTTCTTCTGCACGGTGCCGGTAAGGGGCGGGCGCTGCGCGAGCAAACCATGC GTGCGGTGCCCTTCCGGCACCTGCGCGAATTTCAAGAAGTAAAAACATTGGTGCGACGCATGGCGCGGCGCCTGGCTAGT CTGCATCAGCGGCGCATGAAAAAAAGTCGACGAGGCATGTTGGACGCGCGACGCACTTTGGTGGCCGGTATTCGTCACGA TGGCATACCTATGCGATTGCATTGGCGCCAGCGGCCAGTTCAGAAAAGCCGAGTCATGGTGATTTGTGATGTGTCCAGTT CGGTGAGTGATGCCGCTCGTTTTCTGCTGCAGTTTCTGTACGCAATGAATGATGTGTTACCGCGGGTACGCAGTTTTGCG TTTGCGTCACGCTTTGATGAAATTACGGAGGATTTTCAGCGCTACAGCCCGGATGTGGCTGTGGGTAGGGTTTTGGATCG TCTGTCTGGCAGCGGTACGGATTATGCGGAAATGTTTGCGGATTTCTGGCGTCGTTGTGAACGGGAGTTGGATAGTCATA CCACGGTTATTATTTTGGGTGATGCACGAAATAACTATCTTCCTGAGGGTGCCGAGGTGTTACAGCAAATCCGTCGGCGG GTGAAACAGGTATGGTGGCTCAACCCCGAGGCTCGTTCTCGCTGGAATAGCGGGGATGCGGTGATGGACCGCTATTTGCC CCATTGTCGGATGGCTCGCCAATGCGCTTCACTGGATGACCTTGAACGGATTGTGGATTCGCTGCTCAAGGGGCTAAATT AG
Upstream 100 bases:
>100_bases AGGTTGCGGATACACTTAACCTCGTGTTGAAGACCGAACAGGATGTGACTTTGGCGCGGGAGCTGTTACCGGCTTGGCTG CGTAAGCTGGACAAACGTTA
Downstream 100 bases:
>100_bases CACGCTTTGTGCGCAAGCGTTACCTTTGAGAGTCTGAATGATTCCTGGCTTTTGATGGGCGAGGCCCTGTGCTGCGAAGG GCCTGCCGCAATGTGGTTTG
Product: hypothetical protein
Products: NA
Alternate protein names: VWA Domain Containing CoxE-Like Protein; VWA Containing CoxE-Like; VWA Containing CoxE-Like Protein; Carbon Monoxide Dehydrogenase CoxE Subunit; Carbon Monoxide Dehydrogenase CoxE Accessory Protein; Carbon Monoxide Dehydrogenase E Protein; VWA Domain-Containing Protein; Vwa Domain Containing Coxe-Like Protein; Vwa Domain Coxe-Like Protein; Vwa Containing Coxe Family Protein; VWA Domain Protein; CoxE-Like Protein; Von Willebrand Factor Type A Domain-Containing Protein
Number of amino acids: Translated: 453; Mature: 452
Protein sequence:
>453_residues MPTRRLSEFVQALRGAGLRISPDEATQAMDAAALVGYQGRQRFHDALAMTLVKQEEDRSAFEETFARFFAVTSDVRSGLS SQSAPRAMPAAVNEAGETSEKGRTEEVFADLTTQTPAQLDQRLAEAAARMDFTQMEVITQQGLYTRRLLMNMGMGAVDDR ILELDKGGDLCLARAETLRQWRQEVREQAADHVRRQFLLHGAGKGRALREQTMRAVPFRHLREFQEVKTLVRRMARRLAS LHQRRMKKSRRGMLDARRTLVAGIRHDGIPMRLHWRQRPVQKSRVMVICDVSSSVSDAARFLLQFLYAMNDVLPRVRSFA FASRFDEITEDFQRYSPDVAVGRVLDRLSGSGTDYAEMFADFWRRCERELDSHTTVIILGDARNNYLPEGAEVLQQIRRR VKQVWWLNPEARSRWNSGDAVMDRYLPHCRMARQCASLDDLERIVDSLLKGLN
Sequences:
>Translated_453_residues MPTRRLSEFVQALRGAGLRISPDEATQAMDAAALVGYQGRQRFHDALAMTLVKQEEDRSAFEETFARFFAVTSDVRSGLS SQSAPRAMPAAVNEAGETSEKGRTEEVFADLTTQTPAQLDQRLAEAAARMDFTQMEVITQQGLYTRRLLMNMGMGAVDDR ILELDKGGDLCLARAETLRQWRQEVREQAADHVRRQFLLHGAGKGRALREQTMRAVPFRHLREFQEVKTLVRRMARRLAS LHQRRMKKSRRGMLDARRTLVAGIRHDGIPMRLHWRQRPVQKSRVMVICDVSSSVSDAARFLLQFLYAMNDVLPRVRSFA FASRFDEITEDFQRYSPDVAVGRVLDRLSGSGTDYAEMFADFWRRCERELDSHTTVIILGDARNNYLPEGAEVLQQIRRR VKQVWWLNPEARSRWNSGDAVMDRYLPHCRMARQCASLDDLERIVDSLLKGLN >Mature_452_residues PTRRLSEFVQALRGAGLRISPDEATQAMDAAALVGYQGRQRFHDALAMTLVKQEEDRSAFEETFARFFAVTSDVRSGLSS QSAPRAMPAAVNEAGETSEKGRTEEVFADLTTQTPAQLDQRLAEAAARMDFTQMEVITQQGLYTRRLLMNMGMGAVDDRI LELDKGGDLCLARAETLRQWRQEVREQAADHVRRQFLLHGAGKGRALREQTMRAVPFRHLREFQEVKTLVRRMARRLASL HQRRMKKSRRGMLDARRTLVAGIRHDGIPMRLHWRQRPVQKSRVMVICDVSSSVSDAARFLLQFLYAMNDVLPRVRSFAF ASRFDEITEDFQRYSPDVAVGRVLDRLSGSGTDYAEMFADFWRRCERELDSHTTVIILGDARNNYLPEGAEVLQQIRRRV KQVWWLNPEARSRWNSGDAVMDRYLPHCRMARQCASLDDLERIVDSLLKGLN
Specific function: Unknown
COG id: COG3552
COG function: function code R; Protein containing von Willebrand factor type A (vWA) domain
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 51936; Mature: 51805
Theoretical pI: Translated: 10.19; Mature: 10.19
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.1 %Cys (Translated Protein) 4.2 %Met (Translated Protein) 5.3 %Cys+Met (Translated Protein) 1.1 %Cys (Mature Protein) 4.0 %Met (Mature Protein) 5.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPTRRLSEFVQALRGAGLRISPDEATQAMDAAALVGYQGRQRFHDALAMTLVKQEEDRSA CCHHHHHHHHHHHHCCCCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH FEETFARFFAVTSDVRSGLSSQSAPRAMPAAVNEAGETSEKGRTEEVFADLTTQTPAQLD HHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHCCCCCCCCCHHHHHHHHHCCCHHHHH QRLAEAAARMDFTQMEVITQQGLYTRRLLMNMGMGAVDDRILELDKGGDLCLARAETLRQ HHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCCCHHHHHHHHHHH WRQEVREQAADHVRRQFLLHGAGKGRALREQTMRAVPFRHLREFQEVKTLVRRMARRLAS HHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHH LHQRRMKKSRRGMLDARRTLVAGIRHDGIPMRLHWRQRPVQKSRVMVICDVSSSVSDAAR HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECHHCCCCCCCEEEEEECCCCHHHHHH FLLQFLYAMNDVLPRVRSFAFASRFDEITEDFQRYSPDVAVGRVLDRLSGSGTDYAEMFA HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCCHHHHHH DFWRRCERELDSHTTVIILGDARNNYLPEGAEVLQQIRRRVKQVWWLNPEARSRWNSGDA HHHHHHHHHHCCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHCCCHHHHHCCCCCHH VMDRYLPHCRMARQCASLDDLERIVDSLLKGLN HHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCC >Mature Secondary Structure PTRRLSEFVQALRGAGLRISPDEATQAMDAAALVGYQGRQRFHDALAMTLVKQEEDRSA CHHHHHHHHHHHHCCCCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH FEETFARFFAVTSDVRSGLSSQSAPRAMPAAVNEAGETSEKGRTEEVFADLTTQTPAQLD HHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHCCCCCCCCCHHHHHHHHHCCCHHHHH QRLAEAAARMDFTQMEVITQQGLYTRRLLMNMGMGAVDDRILELDKGGDLCLARAETLRQ HHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCCCHHHHHHHHHHH WRQEVREQAADHVRRQFLLHGAGKGRALREQTMRAVPFRHLREFQEVKTLVRRMARRLAS HHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHH LHQRRMKKSRRGMLDARRTLVAGIRHDGIPMRLHWRQRPVQKSRVMVICDVSSSVSDAAR HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECHHCCCCCCCEEEEEECCCCHHHHHH FLLQFLYAMNDVLPRVRSFAFASRFDEITEDFQRYSPDVAVGRVLDRLSGSGTDYAEMFA HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCCHHHHHH DFWRRCERELDSHTTVIILGDARNNYLPEGAEVLQQIRRRVKQVWWLNPEARSRWNSGDA HHHHHHHHHHCCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHCCCHHHHHCCCCCHH VMDRYLPHCRMARQCASLDDLERIVDSLLKGLN HHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA