Click here to switch to the map view.

The map label for this gene is ssuC [H]

Identifier: 110635868

GI number: 110635868

Start: 3814018

End: 3814794

Strand: Reverse

Name: ssuC [H]

Synonym: Meso_3540

Alternate gene names: 110635868

Gene position: 3814794-3814018 (Counterclockwise)

Preceding gene: 110635869

Following gene: 110635867

Centisome position: 86.46

GC content: 57.79

Gene sequence:

>777_bases
GTGAAGCTCAGTCCGCTTCTGCGGGGAATCGGAGGTCTGCTGGTTTTTGTACTGGCGTGGGAGTTTCTGATTCAGTCCGG
AATGATCCGCTTCCAATATCTTCCTCCGCCGTCGGCGATAGCGATTGCCTTCAACGAGCTCATAGCAACTCCGACGATGT
ATGCGGAAATGATGCATACGATCGGTGCGGCTTTGGGCTCCTGGGTTATCGCGGCCATGATCGGAATTGTTTTGGGAGCG
GCGCTCGGCCTCTCAAAGTCTCTGCGTACCTATACCATGACAAGCATCGAGGTACTGCGGCCACTGCCTCCCGTAGCGCT
CATCCCGGTGGCACTGCTGATGTTCGGCTTTTCCTTGAAGACCGAGCTTTTTGTCATTGCGATCCCCGCCATCTGGCCGA
TCCTGGTCGGCACGATGGGCGGCGTCCTCTCCACATCGACACGGCTCAGGGAAGTGGCGAGGTCGCTGAAGCTGCACCGC
AGCGAAATTCTCTTCAAGATTCTGATTCCCGCCGCCGCTCCCTCGGTTCTTGTGGGTTGCCGGCTGAGCATGTCACTCTC
GCTGGTCCTCGCCATCGTCGTCGAAATGATCGGCAATCCGGAAGGGCTGGGGTATGCGGTGGTCCGCGAGGCACAGGCTC
TCAATCCCAACCTCATGTTCGCCTATATCATACTGATCGGCCTTCTGGGCGTTCTCTTCAACCACTTCCTCGTCGTCGCG
AGCAAGATATTGCTGCCAGGTGAGTTCCGGCGGCCAAATTCGCTGATGGGGAGGTGA

Upstream 100 bases:

>100_bases
ATATTGCGCTGCCAAAGCCGCGCAACCAGATCACGACGAGGGAATTGCCTGAGTTCCTTGCCTTGCGTCATCAGATTCAT
GACGCGATTGGAGGACATTC

Downstream 100 bases:

>100_bases
GGGCTATGCTAGCACTGGCGAATGCGGCGAAGGGATTCCTGCCACTGGTTATAGCTATCGGCGTCTGGCAGTATGCCGGA
GACAAGGAGTCCGCGCTTTT

Product: binding-protein-dependent transport systems inner membrane component

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 258; Mature: 258

Protein sequence:

>258_residues
MKLSPLLRGIGGLLVFVLAWEFLIQSGMIRFQYLPPPSAIAIAFNELIATPTMYAEMMHTIGAALGSWVIAAMIGIVLGA
ALGLSKSLRTYTMTSIEVLRPLPPVALIPVALLMFGFSLKTELFVIAIPAIWPILVGTMGGVLSTSTRLREVARSLKLHR
SEILFKILIPAAAPSVLVGCRLSMSLSLVLAIVVEMIGNPEGLGYAVVREAQALNPNLMFAYIILIGLLGVLFNHFLVVA
SKILLPGEFRRPNSLMGR

Sequences:

>Translated_258_residues
MKLSPLLRGIGGLLVFVLAWEFLIQSGMIRFQYLPPPSAIAIAFNELIATPTMYAEMMHTIGAALGSWVIAAMIGIVLGA
ALGLSKSLRTYTMTSIEVLRPLPPVALIPVALLMFGFSLKTELFVIAIPAIWPILVGTMGGVLSTSTRLREVARSLKLHR
SEILFKILIPAAAPSVLVGCRLSMSLSLVLAIVVEMIGNPEGLGYAVVREAQALNPNLMFAYIILIGLLGVLFNHFLVVA
SKILLPGEFRRPNSLMGR
>Mature_258_residues
MKLSPLLRGIGGLLVFVLAWEFLIQSGMIRFQYLPPPSAIAIAFNELIATPTMYAEMMHTIGAALGSWVIAAMIGIVLGA
ALGLSKSLRTYTMTSIEVLRPLPPVALIPVALLMFGFSLKTELFVIAIPAIWPILVGTMGGVLSTSTRLREVARSLKLHR
SEILFKILIPAAAPSVLVGCRLSMSLSLVLAIVVEMIGNPEGLGYAVVREAQALNPNLMFAYIILIGLLGVLFNHFLVVA
SKILLPGEFRRPNSLMGR

Specific function: Part of a binding-protein-dependent transport system for aliphatic sulfonates. Probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG0600

COG function: function code P; ABC-type nitrate/sulfonate/bicarbonate transport system, permease component

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI87081802, Length=226, Percent_Identity=30.5309734513274, Blast_Score=89, Evalue=3e-19,
Organism=Escherichia coli, GI1786564, Length=216, Percent_Identity=25.462962962963, Blast_Score=80, Evalue=2e-16,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 27833; Mature: 27833

Theoretical pI: Translated: 10.55; Mature: 10.55

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
5.0 %Met     (Translated Protein)
5.4 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
5.0 %Met     (Mature Protein)
5.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKLSPLLRGIGGLLVFVLAWEFLIQSGMIRFQYLPPPSAIAIAFNELIATPTMYAEMMHT
CCCCHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHHHHCHHHHHHHHHH
IGAALGSWVIAAMIGIVLGAALGLSKSLRTYTMTSIEVLRPLPPVALIPVALLMFGFSLK
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCHHHH
TELFVIAIPAIWPILVGTMGGVLSTSTRLREVARSLKLHRSEILFKILIPAAAPSVLVGC
HHHHEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHH
RLSMSLSLVLAIVVEMIGNPEGLGYAVVREAQALNPNLMFAYIILIGLLGVLFNHFLVVA
HHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHH
SKILLPGEFRRPNSLMGR
HHHHCCCCCCCCCCCCCC
>Mature Secondary Structure
MKLSPLLRGIGGLLVFVLAWEFLIQSGMIRFQYLPPPSAIAIAFNELIATPTMYAEMMHT
CCCCHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHHHHCHHHHHHHHHH
IGAALGSWVIAAMIGIVLGAALGLSKSLRTYTMTSIEVLRPLPPVALIPVALLMFGFSLK
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCHHHH
TELFVIAIPAIWPILVGTMGGVLSTSTRLREVARSLKLHRSEILFKILIPAAAPSVLVGC
HHHHEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHH
RLSMSLSLVLAIVVEMIGNPEGLGYAVVREAQALNPNLMFAYIILIGLLGVLFNHFLVVA
HHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHH
SKILLPGEFRRPNSLMGR
HHHHCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 8011666; 9782504; 9384377 [H]