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The map label for this gene is ykwD [H]

Identifier: 110635851

GI number: 110635851

Start: 3793533

End: 3794099

Strand: Reverse

Name: ykwD [H]

Synonym: Meso_3523

Alternate gene names: 110635851

Gene position: 3794099-3793533 (Counterclockwise)

Preceding gene: 110635852

Following gene: 110635840

Centisome position: 85.99

GC content: 59.26

Gene sequence:

>567_bases
GTGCCTCATTTCCATGCTAACCAGCCGCGGTATCGGGGGTTTTGCGTGATAACTGACAAAATGCGTGCGGCAGTACTCTT
AGGCATCCTTCTTTTCTGCGCGGCCTGTGCGGGCACTCCCCTCCAGAACAACAGCCTTGATGGAGTTCAAGACCTGGGCA
GGCTTCGCGCTGAGGCGCTGTCGCTGGTCAACCAGGCGCGCAGACAAAGCGGCGTACCGCCGCTGCGCCTCGATCCAACA
CTTACCGCCGCGGCTCAAGCGCATGCGGAAGATATGGCGCGACGCGGCTTTTACGCGCATCGCTCGCCCGAGCGACAAGA
TATCGGCGACAGATATCAGGCAAATGGCGGCGGTCTGTGGTCCGTTATCGGCGAGAATATCTCGACCTGCCTGAATTGCG
TGGCAGATCTAGGCAGAGTGAGAGAATTTCAGGCGGGATGGATGCGCAGCTCCGGCCACAGGCGGAATATCCTGGATCCC
AGATTTGACCGGCTCGGCTTCGGAATTGCCCAGTCCGGCAGCAAGGTATACGCCGTGCAAACCTTTGTACGCCCACGCGC
CTATTAA

Upstream 100 bases:

>100_bases
CTTCCCCCTACGGAACCGAGGCTCAGGCCGATGCGCTGGCGCGGCAGACGAACAGGACCGGAGAGTCACGCGAACCGGAA
AAACCCAAGCGGGGCTAGAT

Downstream 100 bases:

>100_bases
GCCTCCGCAGGTTCTCCCGCCATCGAGGTATGAGCAATGCCTATGCTTCCGGTCGGAAATTCGCAAGGCGTTTGACGCCG
GCCTTTCTGCCGCAGCACCT

Product: Allergen V5/Tpx-1 related

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 188; Mature: 187

Protein sequence:

>188_residues
MPHFHANQPRYRGFCVITDKMRAAVLLGILLFCAACAGTPLQNNSLDGVQDLGRLRAEALSLVNQARRQSGVPPLRLDPT
LTAAAQAHAEDMARRGFYAHRSPERQDIGDRYQANGGGLWSVIGENISTCLNCVADLGRVREFQAGWMRSSGHRRNILDP
RFDRLGFGIAQSGSKVYAVQTFVRPRAY

Sequences:

>Translated_188_residues
MPHFHANQPRYRGFCVITDKMRAAVLLGILLFCAACAGTPLQNNSLDGVQDLGRLRAEALSLVNQARRQSGVPPLRLDPT
LTAAAQAHAEDMARRGFYAHRSPERQDIGDRYQANGGGLWSVIGENISTCLNCVADLGRVREFQAGWMRSSGHRRNILDP
RFDRLGFGIAQSGSKVYAVQTFVRPRAY
>Mature_187_residues
PHFHANQPRYRGFCVITDKMRAAVLLGILLFCAACAGTPLQNNSLDGVQDLGRLRAEALSLVNQARRQSGVPPLRLDPTL
TAAAQAHAEDMARRGFYAHRSPERQDIGDRYQANGGGLWSVIGENISTCLNCVADLGRVREFQAGWMRSSGHRRNILDPR
FDRLGFGIAQSGSKVYAVQTFVRPRAY

Specific function: Unknown

COG id: COG2340

COG function: function code S; Uncharacterized protein with SCP/PR1 domains

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 SCP domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014044
- InterPro:   IPR014258 [H]

Pfam domain/function: PF00188 SCP [H]

EC number: NA

Molecular weight: Translated: 20783; Mature: 20652

Theoretical pI: Translated: 10.16; Mature: 10.16

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.7 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
4.8 %Cys+Met (Translated Protein)
2.7 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
4.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPHFHANQPRYRGFCVITDKMRAAVLLGILLFCAACAGTPLQNNSLDGVQDLGRLRAEAL
CCCCCCCCCCCCEEEEEHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHH
SLVNQARRQSGVPPLRLDPTLTAAAQAHAEDMARRGFYAHRSPERQDIGDRYQANGGGLW
HHHHHHHHHCCCCCEEECCHHHHHHHHHHHHHHHHCCCCCCCCCHHHCCHHHCCCCCCHH
SVIGENISTCLNCVADLGRVREFQAGWMRSSGHRRNILDPRFDRLGFGIAQSGSKVYAVQ
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHCCCHHCCCCEEEEHH
TFVRPRAY
HHHCCCCC
>Mature Secondary Structure 
PHFHANQPRYRGFCVITDKMRAAVLLGILLFCAACAGTPLQNNSLDGVQDLGRLRAEAL
CCCCCCCCCCCEEEEEHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHH
SLVNQARRQSGVPPLRLDPTLTAAAQAHAEDMARRGFYAHRSPERQDIGDRYQANGGGLW
HHHHHHHHHCCCCCEEECCHHHHHHHHHHHHHHHHCCCCCCCCCHHHCCHHHCCCCCCHH
SVIGENISTCLNCVADLGRVREFQAGWMRSSGHRRNILDPRFDRLGFGIAQSGSKVYAVQ
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHCCCHHCCCCEEEEHH
TFVRPRAY
HHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]