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The map label for this gene is ybdA [C]

Identifier: 110635699

GI number: 110635699

Start: 3643574

End: 3644815

Strand: Reverse

Name: ybdA [C]

Synonym: Meso_3371

Alternate gene names: 110635699

Gene position: 3644815-3643574 (Counterclockwise)

Preceding gene: 110635701

Following gene: 110635698

Centisome position: 82.6

GC content: 61.35

Gene sequence:

>1242_bases
ATGGAAACCGCAGAGATCTCCAGCCCCGACGACCGATATATTGCCTTCCGTCACGGCGCTTTTACCCTTTATTGGGTAGC
GCGCTTGCTGGCCTCATTTGCAACCCAGATCGTCTCCGTTGCGGTCGGCTGGCAAATCTATGATCTGACGCGCAACCCCT
TCGATCTTGGGCTGGTGGGCCTCGTTCAATTCGCGCCTTCGCTCATGCTTTTCCTAGTCACTGGCGCGGTGGCGGACCGA
TTTGGCCGGCGCATGATCATGGGCCTTTCCGCAGCTCTCGAAGGAGCCTGCGCGCTGGCACTGCTTCTTCTTACGCTGCG
CGGTCTCGATTCGGTGTTGCCGGTCTTTGCCACTCTCGCCGTTTTCGGTACGGCGCGGGCCTTCATGGGACCGGCGTCCT
CGTCGCTGATAGCCAATCTCGTGCCCGCCGAACATTTCGCCAATGCCGTGGCGTGGAATTCCACTGCCTGGCAAACGGCC
ATGATCGTCGGGCCTGTGGCAGGTGGATTGCTTTATGGCCTGTCGGCCGAGACCGCCTATGGCGTTGCGACAGTGCTGAT
GTTTACGGCGGCCGTCCTCTGCTTTCTGATCTCGAAGCCGCAGCAGCGGACAGAATCCGAGCGGCCGACGCTGGAAGTTC
TATTTGCCGGCTTCCGCTACATCTGGAGGGAAAAGATCGTCCTTGGCGCGATTTCCATGGATCTTTTTGCCGTGCTGCTG
GGCGGGGCGGTCGCGTTGCTTCCGGTCTACGCCCGCGACATCCTGGAGCTGGGACCATGGGGCCTTGGTCTGCTGAGATC
GGCTCCGGGGATAGGGGCGCTTTCGGTTGCGGTTTGGCTGGCAGGTCATCCCATCCGCGACCATGCCGGCGTCATCATGT
TCTTTTTCGTCGCCCTGTTCGGCCTATTCACCGCGGTCTTCGGCCTCTCCACGATTTCCTTGCTGTCGATTGCAGCGCTT
GCCGGCTTGGGCGCCGCGGACATGGTAAGCGTCTATATTCGCGAGACCCTCATCCAGCTCTGGACACCCGACCGGCTACG
TGGCCGGGTCAATGCGGTGAATATGGTTTTCGTGGGCGCATCCAATGAGCTCGGCGAGTTCCGCGCCGGTACGATGGCCG
CCTTTATCGGCGTTGTCCCGGCAGTGGTTTTCGGCGGCGTGGGTGCCATGGCCGTTGCGGGGCTTTGGGCCTGGCTTTTT
CCCGAGCTGCGCAAAGCGCGCCATCTTAACGGCCGCGACTAA

Upstream 100 bases:

>100_bases
TGGTCCAGAATGCAAATCTCTCGCGCGCGACAGAATAGATTACGCTAAAAGCTGCCGACAATTGCCGCAAGACCGCGGCG
AGACAACGCTTCGCAGCTTC

Downstream 100 bases:

>100_bases
ACTGGTGTAGTTTAGAGTTGAAGAGCTGCACTGAAGCGGAGGTAGCCCGCTATGCGAATTTTTTCGAATAATCACAATAT
GGTGTAAGTTTTAACGCTCC

Product: major facilitator transporter

Products: NA

Alternate protein names: Facilitator Superfamily Protein; Facilitator Superfamily Permease; Facilitator Superfamily Transporter; DrugProton Antiporter; MFS Permease; Membrane Transporter; Transporter Facilitator Family; Transmembrane Protein; Permease Of Facilitator Superfamily; Facilitator Superfamily Transporter Permease; MFS Family Transporter; Facilitator Superfamily; Facilitator MFS1 Protein; Permease Facilitator Superfamily; Macrolide-Efflux Protein; Integral Membrane Protein; Permease Protein; Permeases Of Facilitator Superfamily; MFS Family Transporter Protein; Permease; Permease MDR ; Facilitator Superfamily Transmembrane Transporter; Arabinose Efflux Permease; Permease Of Facilitator Superfamily Protein; Integral Membrane Efflux Protein; Drug Proton Antiporter; Integral Membrane Transporter; Integral Membrane Protein MFS Transporter; Membrame Protein; DrugH+ Antiporter; Facilitator Family Transporter; Facilitator Superfamily Multidrug Resistance Protein; Permeases Of Facilitator Superfamily Protein

Number of amino acids: Translated: 413; Mature: 413

Protein sequence:

>413_residues
METAEISSPDDRYIAFRHGAFTLYWVARLLASFATQIVSVAVGWQIYDLTRNPFDLGLVGLVQFAPSLMLFLVTGAVADR
FGRRMIMGLSAALEGACALALLLLTLRGLDSVLPVFATLAVFGTARAFMGPASSSLIANLVPAEHFANAVAWNSTAWQTA
MIVGPVAGGLLYGLSAETAYGVATVLMFTAAVLCFLISKPQQRTESERPTLEVLFAGFRYIWREKIVLGAISMDLFAVLL
GGAVALLPVYARDILELGPWGLGLLRSAPGIGALSVAVWLAGHPIRDHAGVIMFFFVALFGLFTAVFGLSTISLLSIAAL
AGLGAADMVSVYIRETLIQLWTPDRLRGRVNAVNMVFVGASNELGEFRAGTMAAFIGVVPAVVFGGVGAMAVAGLWAWLF
PELRKARHLNGRD

Sequences:

>Translated_413_residues
METAEISSPDDRYIAFRHGAFTLYWVARLLASFATQIVSVAVGWQIYDLTRNPFDLGLVGLVQFAPSLMLFLVTGAVADR
FGRRMIMGLSAALEGACALALLLLTLRGLDSVLPVFATLAVFGTARAFMGPASSSLIANLVPAEHFANAVAWNSTAWQTA
MIVGPVAGGLLYGLSAETAYGVATVLMFTAAVLCFLISKPQQRTESERPTLEVLFAGFRYIWREKIVLGAISMDLFAVLL
GGAVALLPVYARDILELGPWGLGLLRSAPGIGALSVAVWLAGHPIRDHAGVIMFFFVALFGLFTAVFGLSTISLLSIAAL
AGLGAADMVSVYIRETLIQLWTPDRLRGRVNAVNMVFVGASNELGEFRAGTMAAFIGVVPAVVFGGVGAMAVAGLWAWLF
PELRKARHLNGRD
>Mature_413_residues
METAEISSPDDRYIAFRHGAFTLYWVARLLASFATQIVSVAVGWQIYDLTRNPFDLGLVGLVQFAPSLMLFLVTGAVADR
FGRRMIMGLSAALEGACALALLLLTLRGLDSVLPVFATLAVFGTARAFMGPASSSLIANLVPAEHFANAVAWNSTAWQTA
MIVGPVAGGLLYGLSAETAYGVATVLMFTAAVLCFLISKPQQRTESERPTLEVLFAGFRYIWREKIVLGAISMDLFAVLL
GGAVALLPVYARDILELGPWGLGLLRSAPGIGALSVAVWLAGHPIRDHAGVIMFFFVALFGLFTAVFGLSTISLLSIAAL
AGLGAADMVSVYIRETLIQLWTPDRLRGRVNAVNMVFVGASNELGEFRAGTMAAFIGVVPAVVFGGVGAMAVAGLWAWLF
PELRKARHLNGRD

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Integral Membrane Protein [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 44031; Mature: 44031

Theoretical pI: Translated: 8.22; Mature: 8.22

Prosite motif: PS50850 MFS ; PS00216 SUGAR_TRANSPORT_1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
3.1 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
METAEISSPDDRYIAFRHGAFTLYWVARLLASFATQIVSVAVGWQIYDLTRNPFDLGLVG
CCCCCCCCCCCCEEEEECCCHHHHHHHHHHHHHHHHHHHHHHCCEEEECCCCCHHHHHHH
LVQFAPSLMLFLVTGAVADRFGRRMIMGLSAALEGACALALLLLTLRGLDSVLPVFATLA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
VFGTARAFMGPASSSLIANLVPAEHFANAVAWNSTAWQTAMIVGPVAGGLLYGLSAETAY
HHHHHHHHCCCCHHHHHHHHCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCHHHH
GVATVLMFTAAVLCFLISKPQQRTESERPTLEVLFAGFRYIWREKIVLGAISMDLFAVLL
HHHHHHHHHHHHHHHHHCCCHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
GGAVALLPVYARDILELGPWGLGLLRSAPGIGALSVAVWLAGHPIRDHAGVIMFFFVALF
HHHHHHHHHHHHHHHHHCCCCHHHHHCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHH
GLFTAVFGLSTISLLSIAALAGLGAADMVSVYIRETLIQLWTPDRLRGRVNAVNMVFVGA
HHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCHHHCCCCCEEEEEEEEC
SNELGEFRAGTMAAFIGVVPAVVFGGVGAMAVAGLWAWLFPELRKARHLNGRD
CCCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCCC
>Mature Secondary Structure
METAEISSPDDRYIAFRHGAFTLYWVARLLASFATQIVSVAVGWQIYDLTRNPFDLGLVG
CCCCCCCCCCCCEEEEECCCHHHHHHHHHHHHHHHHHHHHHHCCEEEECCCCCHHHHHHH
LVQFAPSLMLFLVTGAVADRFGRRMIMGLSAALEGACALALLLLTLRGLDSVLPVFATLA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
VFGTARAFMGPASSSLIANLVPAEHFANAVAWNSTAWQTAMIVGPVAGGLLYGLSAETAY
HHHHHHHHCCCCHHHHHHHHCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCHHHH
GVATVLMFTAAVLCFLISKPQQRTESERPTLEVLFAGFRYIWREKIVLGAISMDLFAVLL
HHHHHHHHHHHHHHHHHCCCHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
GGAVALLPVYARDILELGPWGLGLLRSAPGIGALSVAVWLAGHPIRDHAGVIMFFFVALF
HHHHHHHHHHHHHHHHHCCCCHHHHHCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHH
GLFTAVFGLSTISLLSIAALAGLGAADMVSVYIRETLIQLWTPDRLRGRVNAVNMVFVGA
HHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCHHHCCCCCEEEEEEEEC
SNELGEFRAGTMAAFIGVVPAVVFGGVGAMAVAGLWAWLFPELRKARHLNGRD
CCCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: NA