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The map label for this gene is ycaR [C]

Identifier: 110635599

GI number: 110635599

Start: 3535651

End: 3535866

Strand: Reverse

Name: ycaR [C]

Synonym: Meso_3270

Alternate gene names: 110635599

Gene position: 3535866-3535651 (Counterclockwise)

Preceding gene: 110635600

Following gene: 110635597

Centisome position: 80.13

GC content: 62.96

Gene sequence:

>216_bases
ATGACGGATGGCAGGCGAATCGAGAGGACGTCGATCGACCCGAAGCTTCTGGAACTTCTGGCGTGCCCGGTCACCAAGGG
TCCGCTGAAGTGGGACCCTGCGAAAAACGAACTCATCTCCGCCAAGGCCGGGCTTGCATATCCGGTTCGCGACGGCGTTC
CCGTGATGCTACCAGGGGAAGCCCGGCCGCTTGAACCGGATAAGCCCCGGCGGTGA

Upstream 100 bases:

>100_bases
TGATCGCCATCACGGAACGCATCCTCGCGCGCAAGGAGGGCCATGCCCATCGGACGCTGCAATAGGGCGTCGGCCGGCAA
GGTTTAAGGAGAGTACCCCC

Downstream 100 bases:

>100_bases
AGAACTGCGGAGCGGTTTGAAATGCCGCCCGCTCAGGCCCAGGGGCGGCTTTCGGCGTATTTGTTCTCGAAGGACTGGAT
GGCGGGCGCCTTTTCCAGCG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 71; Mature: 70

Protein sequence:

>71_residues
MTDGRRIERTSIDPKLLELLACPVTKGPLKWDPAKNELISAKAGLAYPVRDGVPVMLPGEARPLEPDKPRR

Sequences:

>Translated_71_residues
MTDGRRIERTSIDPKLLELLACPVTKGPLKWDPAKNELISAKAGLAYPVRDGVPVMLPGEARPLEPDKPRR
>Mature_70_residues
TDGRRIERTSIDPKLLELLACPVTKGPLKWDPAKNELISAKAGLAYPVRDGVPVMLPGEARPLEPDKPRR

Specific function: Unknown

COG id: COG2835

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0434 family

Homologues:

Organism=Homo sapiens, GI14249680, Length=51, Percent_Identity=50.9803921568627, Blast_Score=64, Evalue=3e-11,
Organism=Escherichia coli, GI1787146, Length=59, Percent_Identity=47.4576271186441, Blast_Score=62, Evalue=5e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): Y3270_MESSB (Q11D83)

Other databases:

- EMBL:   CP000390
- RefSeq:   YP_675807.1
- ProteinModelPortal:   Q11D83
- SMR:   Q11D83
- STRING:   Q11D83
- GeneID:   4183243
- GenomeReviews:   CP000390_GR
- KEGG:   mes:Meso_3270
- NMPDR:   fig|266779.1.peg.15
- eggNOG:   COG2835
- HOGENOM:   HBG713593
- OMA:   MKISTSL
- PhylomeDB:   Q11D83
- BioCyc:   MSP266779:MESO_3270-MONOMER
- HAMAP:   MF_01187
- InterPro:   IPR005651

Pfam domain/function: PF03966 Trm112p

EC number: NA

Molecular weight: Translated: 7845; Mature: 7714

Theoretical pI: Translated: 9.90; Mature: 9.90

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
4.2 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTDGRRIERTSIDPKLLELLACPVTKGPLKWDPAKNELISAKAGLAYPVRDGVPVMLPGE
CCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCEEECCCCCEECCCCCCCEEECCC
ARPLEPDKPRR
CCCCCCCCCCC
>Mature Secondary Structure 
TDGRRIERTSIDPKLLELLACPVTKGPLKWDPAKNELISAKAGLAYPVRDGVPVMLPGE
CCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCEEECCCCCEECCCCCCCEEECCC
ARPLEPDKPRR
CCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA