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The map label for this gene is exbD [H]

Identifier: 110635502

GI number: 110635502

Start: 3446582

End: 3447031

Strand: Reverse

Name: exbD [H]

Synonym: Meso_3173

Alternate gene names: 110635502

Gene position: 3447031-3446582 (Counterclockwise)

Preceding gene: 110635503

Following gene: 110635501

Centisome position: 78.12

GC content: 58.89

Gene sequence:

>450_bases
ATGGGGATGTCGGTCGCTTCGGCTAGGGGCGCAAATGGGCGCCGGCGCAAAGGCCGCCGTCATGCGCCTATGTCCGAGAT
CAATGTCACGCCTTTCGTGGACGTGATGCTGGTGCTGCTCATCATCTTCATGGTGGCGGCGCCTCTCTTGACCGTAGGCG
TTCCGATCGATCTGCCCGAAACCCAGGCAAGGGCGCTGAACTCGGAAACACAGCCGATCACCGTCTCCGTCAACAGCGAA
GGCCTGATCTATCTGCAGGAAACGGAAATACCGCTCGAAGAGGTGGTGCCGAAGCTGCAGGCTATCGCTCAGGCAGGCTA
TGAAGAGCGAATTTATGTACGTGGCGACCGTAACGCGGATTATGGCACGGTCATGCGCGTGATGGCGCGCGTTTCAGCCG
CCGGTTTCCGCAATCTCGGACTGGTCACATTGCAGGAACAGGATAACTGA

Upstream 100 bases:

>100_bases
CGCGGATGGAAGGCTTCGCGGACGAGTTCTCGGCCATACTCTCGCGACAAATCGATGAGAAAGTCGCCCCCAAAGCCCGG
GCGGTGGAGGAGTATGCCTG

Downstream 100 bases:

>100_bases
CCTTATGAGGGCTGGCCTTGCCACATCGGTCACCTTGCACGCGGTGCTCATCGGCTTCGGGATTGTCTCGTTGCAGGCTC
CGCGCGCCTTCGAGGTTGCC

Product: biopolymer transport protein ExbD/TolR

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 149; Mature: 148

Protein sequence:

>149_residues
MGMSVASARGANGRRRKGRRHAPMSEINVTPFVDVMLVLLIIFMVAAPLLTVGVPIDLPETQARALNSETQPITVSVNSE
GLIYLQETEIPLEEVVPKLQAIAQAGYEERIYVRGDRNADYGTVMRVMARVSAAGFRNLGLVTLQEQDN

Sequences:

>Translated_149_residues
MGMSVASARGANGRRRKGRRHAPMSEINVTPFVDVMLVLLIIFMVAAPLLTVGVPIDLPETQARALNSETQPITVSVNSE
GLIYLQETEIPLEEVVPKLQAIAQAGYEERIYVRGDRNADYGTVMRVMARVSAAGFRNLGLVTLQEQDN
>Mature_148_residues
GMSVASARGANGRRRKGRRHAPMSEINVTPFVDVMLVLLIIFMVAAPLLTVGVPIDLPETQARALNSETQPITVSVNSEG
LIYLQETEIPLEEVVPKLQAIAQAGYEERIYVRGDRNADYGTVMRVMARVSAAGFRNLGLVTLQEQDN

Specific function: Involved in the tonB-dependent energy-dependent transport of various receptor-bound substrates [H]

COG id: COG0848

COG function: function code U; Biopolymer transport protein

Gene ontology:

Cell location: Cell inner membrane; Single-pass type II membrane protein (Probable) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the exbD/tolR family [H]

Homologues:

Organism=Escherichia coli, GI1789380, Length=119, Percent_Identity=40.3361344537815, Blast_Score=99, Evalue=8e-23,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003400
- InterPro:   IPR014170 [H]

Pfam domain/function: PF02472 ExbD [H]

EC number: NA

Molecular weight: Translated: 16323; Mature: 16192

Theoretical pI: Translated: 5.92; Mature: 5.92

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
4.7 %Met     (Translated Protein)
4.7 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
4.1 %Met     (Mature Protein)
4.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGMSVASARGANGRRRKGRRHAPMSEINVTPFVDVMLVLLIIFMVAAPLLTVGVPIDLPE
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
TQARALNSETQPITVSVNSEGLIYLQETEIPLEEVVPKLQAIAQAGYEERIYVRGDRNAD
HHHHHCCCCCCCEEEEECCCCEEEEECCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCCC
YGTVMRVMARVSAAGFRNLGLVTLQEQDN
HHHHHHHHHHHHHCCCCCCCEEEEECCCC
>Mature Secondary Structure 
GMSVASARGANGRRRKGRRHAPMSEINVTPFVDVMLVLLIIFMVAAPLLTVGVPIDLPE
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
TQARALNSETQPITVSVNSEGLIYLQETEIPLEEVVPKLQAIAQAGYEERIYVRGDRNAD
HHHHHCCCCCCCEEEEECCCCEEEEECCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCCC
YGTVMRVMARVSAAGFRNLGLVTLQEQDN
HHHHHHHHHHHHHCCCCCCCEEEEECCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 8437515 [H]