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The map label for this gene is rpoE [H]

Identifier: 110635436

GI number: 110635436

Start: 3376830

End: 3377381

Strand: Reverse

Name: rpoE [H]

Synonym: Meso_3107

Alternate gene names: 110635436

Gene position: 3377381-3376830 (Counterclockwise)

Preceding gene: 110635437

Following gene: 110635433

Centisome position: 76.54

GC content: 58.88

Gene sequence:

>552_bases
ATGTCGGCGTCACCAAGTTTCCGCGACGGTCTCTTGGCCGCAGTGCCAACGCTGCGCGCTTTTGCAGTATCGCTCGCAAA
AAATGCTGACCGGGCCGATGATTTGGTCCAGGAAACGCTGGTTAAAGCCTGGGACAAGCAGGACAGCTTCCAACCAGGCA
CCAATCTCAAGGCTTGGCTCTTCACCATCCTTCGCAACGAGTTTTATTCCCAAATGCGCAAGCGTCGGCGCGAGGTTGAA
GATAGCGACGGAAGCATCACCGCGCGCTTGTCTATCCATCCCGCCCAAGAGGGCAATTCGGACCTGAACGATTTTCGCCG
CGCGCTTGCTCTCCTGCCCGAAGATCAGAGGGAGGCCATTATACTGATCGGGGCCTCCGGGTTTTCCTATGAGGAGGCCG
CCGAGATCTGCGGATGCGCGGTAGGCACGATCAAATCCCGTGTCAGCCGGGCGCGCAGTCGACTGCAGGAGATCCTGTCA
ATCTCGGGGGAAGGTGATTTCGGGCCCGATGCGATTACGGCGCAGGTGACCAACTCAGCGGCAGTGGCTTAG

Upstream 100 bases:

>100_bases
GAGTTGATCTCTGAGGAAGTTCCGGACCGTTTCAGCCAACTGCTGAATCAGCTGCAGCAGCAGGAACAGCAAGGATCGAC
GGCGAAAAAGGATTAAACCG

Downstream 100 bases:

>100_bases
GCGGGCGCGGTCGACCACTGACCGGATCGCACTGACCAATTCATCTGCGGTGTAAGGCTTCGACACGACGGGCACGTCGG
GGAATTCCTCGAATATGGCG

Product: RNA polymerase sigma factor

Products: NA

Alternate protein names: Sigma-24 [H]

Number of amino acids: Translated: 183; Mature: 182

Protein sequence:

>183_residues
MSASPSFRDGLLAAVPTLRAFAVSLAKNADRADDLVQETLVKAWDKQDSFQPGTNLKAWLFTILRNEFYSQMRKRRREVE
DSDGSITARLSIHPAQEGNSDLNDFRRALALLPEDQREAIILIGASGFSYEEAAEICGCAVGTIKSRVSRARSRLQEILS
ISGEGDFGPDAITAQVTNSAAVA

Sequences:

>Translated_183_residues
MSASPSFRDGLLAAVPTLRAFAVSLAKNADRADDLVQETLVKAWDKQDSFQPGTNLKAWLFTILRNEFYSQMRKRRREVE
DSDGSITARLSIHPAQEGNSDLNDFRRALALLPEDQREAIILIGASGFSYEEAAEICGCAVGTIKSRVSRARSRLQEILS
ISGEGDFGPDAITAQVTNSAAVA
>Mature_182_residues
SASPSFRDGLLAAVPTLRAFAVSLAKNADRADDLVQETLVKAWDKQDSFQPGTNLKAWLFTILRNEFYSQMRKRRREVED
SDGSITARLSIHPAQEGNSDLNDFRRALALLPEDQREAIILIGASGFSYEEAAEICGCAVGTIKSRVSRARSRLQEILSI
SGEGDFGPDAITAQVTNSAAVA

Specific function: Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is involved in heat shock and oxidative stress response; it is believed to control protein processing

COG id: COG1595

COG function: function code K; DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the sigma-70 factor family. ECF subfamily [H]

Homologues:

Organism=Escherichia coli, GI1788926, Length=131, Percent_Identity=34.3511450381679, Blast_Score=61, Evalue=3e-11,

Paralogues:

None

Copy number: <10 [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014284
- InterPro:   IPR014293
- InterPro:   IPR000838
- InterPro:   IPR007627
- InterPro:   IPR013249
- InterPro:   IPR013325
- InterPro:   IPR013324 [H]

Pfam domain/function: PF04542 Sigma70_r2; PF08281 Sigma70_r4_2 [H]

EC number: NA

Molecular weight: Translated: 19948; Mature: 19816

Theoretical pI: Translated: 5.07; Mature: 5.07

Prosite motif: PS01063 SIGMA70_ECF

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
0.5 %Met     (Mature Protein)
1.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSASPSFRDGLLAAVPTLRAFAVSLAKNADRADDLVQETLVKAWDKQDSFQPGTNLKAWL
CCCCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCCCCCCHHHHH
FTILRNEFYSQMRKRRREVEDSDGSITARLSIHPAQEGNSDLNDFRRALALLPEDQREAI
HHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCCCCCHHHHHHHHHHCCCCCCCEE
ILIGASGFSYEEAAEICGCAVGTIKSRVSRARSRLQEILSISGEGDFGPDAITAQVTNSA
EEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEECCCC
AVA
CCC
>Mature Secondary Structure 
SASPSFRDGLLAAVPTLRAFAVSLAKNADRADDLVQETLVKAWDKQDSFQPGTNLKAWL
CCCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCCCCCCHHHHH
FTILRNEFYSQMRKRRREVEDSDGSITARLSIHPAQEGNSDLNDFRRALALLPEDQREAI
HHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCCCCCHHHHHHHHHHCCCCCCCEE
ILIGASGFSYEEAAEICGCAVGTIKSRVSRARSRLQEILSISGEGDFGPDAITAQVTNSA
EEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEECCCC
AVA
CCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12788972 [H]