Click here to switch to the map view.

The map label for this gene is yciR [C]

Identifier: 110635143

GI number: 110635143

Start: 3054932

End: 3057241

Strand: Reverse

Name: yciR [C]

Synonym: Meso_2810

Alternate gene names: 110635143

Gene position: 3057241-3054932 (Counterclockwise)

Preceding gene: 110635144

Following gene: 110635142

Centisome position: 69.29

GC content: 58.4

Gene sequence:

>2310_bases
ATGGCCAGGCGTGCCACCGACATTCCAGATGATGTCTACGTCCAGTTTGTGAGGTCGTTGTTCGAGAGCAGGATTATGCT
GCTCATCGGCGCCTTCTCTCACATGCTCGTCGCGTTGATGGCCTATCTCAGAACCGAGCGCCCGCTATTTGCAATACTTT
CGGTGCTGTTTCTCGCGGTCGGTTTCTGGCGCTTCTCGGGATTGCGTCCCACCGATGAGGACCTGGACAAACTCGATGTC
GAGACGGCGCGCAAATGGGAAGCCAGCTACGTCGTCAAAGGTGGATTCCAGGGCCTTCTGCTTGGCTTATTCGCCTTTTC
TTCCGTCTTTCTCTACCCCGACCAGTTCGCCGAGCTTGGTGCCCTGGCCATAAATCTCGCATCGCTGGTGACGGTTGTCG
GCCGCAATTACGGCTCGGCGCGAATGGTGGTGATCTTCACCACGACAATGATGGCGCCGATCATGGCCGGGCTCCTGCTG
CGCGCCGAACTGCCGTATGTGGTGCTTGGCCTTCTCGTCCTTCCGTTCGGCTATATCGTTGTGAGAAGCGCGGAGGAGGT
GCGGAATATCCTCGCGCGGGCAGTGGAGGAGGGGCGAAAGGCCGATGAGCTTGCGCGGCGGTTCGACCGTGCGCTGAACA
CCATGTCGCACGGGCTGGTCATGTTCAGCCCGCAGGGCCGTGTCGTTGTCGCCAACGCCCAAGCGGCGGAATTCCTCAGC
TTCCAGTCGTCTCAACAACTCCTCGGCCGAACGCTCGATGCGCTGCTTATGCGCGGTCTTGCGGGCAACATGTTGAGCCC
TAAGGACTTCGACTATGCACGGGCACAGCTCAGGCGCGCACTGAGCAAGGGACGGGGCAGAAAAGTGCTTCTGGCGCTGA
CCGACGGGCGGTATATCGAATTCTCGGCGCGGGAAGGGCGCGAGGAACTGCGAGTCCTAACGTTCGAGGAAGTGACGCAG
CGCGTCGAAGCCGAAGCCAAAATCCGGCACATGGCGCGGTATGACAGCCTGACCAACCTGCCGAACAGGGCGTATTTCCA
GGAGCTGGTGAGAGAATTCATGGCTGCTGGCGACGAGAGTCGCCTTTGTGGCCTAGCCGTTATGGACCTGGACGATTTCA
AGACGATCAACGATACGCTCGGCCATCCGGTTGGCGACGGATTGATCTATGCGGTGGCGGAGCGCCTGGCGGAGTTCGAG
AGCGGAAGCGTGAAAGTGGGCCGCTTCGGCGGCGACGAATTCATGGTCTATTTCGATCGCGTCGAGGATGAAACGGATTT
CGCAAATCAGTTCAACGTGATCTTCAGCGCATTGCAGGGCGAGGTCGATATCGCTGGCCATCTGTTAAGAATCCAGGCGA
GCGGCGGCGCTGTCGTTGTGCCCGTTCGTGACGGCGATCTGGACATGATCACTGTCAAAGCAGATCTTGCCCTTTATAAC
GCGAAGGAGCAGGGCAAAAATTGCTGGCGGCTTTTCGAGGCCGATATGGACGCCGCTTTCCGCAGCCGGCAGATAATGAA
ATCAGAGCTGCGCAGCGCGATCCAGTCAAGAAACCTGCGCGTTGTCTACCAGCCGATCGTAGACGTGCGCACCATGCGTA
TCTCCGATTGCGAGGCCCTGTGCCGATGGGATCATCCGGATCTGGGTCCTGTGTCTCCAGCCATCTTCATCCCGCTTGCC
GAGGAAATGGGGCTGATCTCGGAAATCAGCGCCTTCGTGCTGGAGGCAGCCTGCCAGGAATGCATGAACTGGCCCCAACA
TATCGGCGTCTCGGTCAATCTTTCAGCCAAGGATTTTCAGAGCGGGGCCGTGATCGACAAGGTTCGCGAAACGCTTAACA
AATCCGGGATAGCCCCCGAGCGCCTGGAGATCGAAGTGACTGAAACGGCGCTGCTCTATGACAAGGATGCCACGCGTCTT
TATATCGAAGGGCTCAAGGAACTAGGCATTCGAATCGCCCTCGACGATTTCGGCACCGGCTATTCGAGCCTGAGCTACCT
TCACACGCTTCCTCTTGACCGGGTGAAGATCGACAGCAGCTTCCTCCATGACGTGACGAAGAATCCACGGTCTCACAAGC
TGCTGAAGAGCGTCGTGCAGCTGTCCCGCGGGCTCGGCCTGGACGTGACGGTGGAGGGGGTGGAAACCTTTCAGCAGCTT
AAGCTGCTCGAAACCTCTGTTAAGCCCGACCGGGTGCAAGGTTTTCTTTTTGGATCCGCTCTGTCCGCTTCCGGGATCAA
AACCATGTCAGACGTGGTCTGGTACGCGGAAGACGGGAACATTCGGCGCGACAAAAGCTTACAGCACTGA

Upstream 100 bases:

>100_bases
GAATGAGGTATAAAGAAATAGTATAAAAATGTCCGTTTCAACCGCATAATTTTTTCTTAAGCTCGCATTGCCATAATCGT
ATCGCGGAGCGGGAGAATAT

Downstream 100 bases:

>100_bases
AGCCAACAACTCGCTCTTACTTCAAAGAAGCCACCTGTTAAGGTTAACGCAAGGAAATTGCCTTAAGGTTAACACAAGGT
AAATATGTATCTTCTAATTT

Product: diguanylate cyclase/phosphodiesterase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 769; Mature: 768

Protein sequence:

>769_residues
MARRATDIPDDVYVQFVRSLFESRIMLLIGAFSHMLVALMAYLRTERPLFAILSVLFLAVGFWRFSGLRPTDEDLDKLDV
ETARKWEASYVVKGGFQGLLLGLFAFSSVFLYPDQFAELGALAINLASLVTVVGRNYGSARMVVIFTTTMMAPIMAGLLL
RAELPYVVLGLLVLPFGYIVVRSAEEVRNILARAVEEGRKADELARRFDRALNTMSHGLVMFSPQGRVVVANAQAAEFLS
FQSSQQLLGRTLDALLMRGLAGNMLSPKDFDYARAQLRRALSKGRGRKVLLALTDGRYIEFSAREGREELRVLTFEEVTQ
RVEAEAKIRHMARYDSLTNLPNRAYFQELVREFMAAGDESRLCGLAVMDLDDFKTINDTLGHPVGDGLIYAVAERLAEFE
SGSVKVGRFGGDEFMVYFDRVEDETDFANQFNVIFSALQGEVDIAGHLLRIQASGGAVVVPVRDGDLDMITVKADLALYN
AKEQGKNCWRLFEADMDAAFRSRQIMKSELRSAIQSRNLRVVYQPIVDVRTMRISDCEALCRWDHPDLGPVSPAIFIPLA
EEMGLISEISAFVLEAACQECMNWPQHIGVSVNLSAKDFQSGAVIDKVRETLNKSGIAPERLEIEVTETALLYDKDATRL
YIEGLKELGIRIALDDFGTGYSSLSYLHTLPLDRVKIDSSFLHDVTKNPRSHKLLKSVVQLSRGLGLDVTVEGVETFQQL
KLLETSVKPDRVQGFLFGSALSASGIKTMSDVVWYAEDGNIRRDKSLQH

Sequences:

>Translated_769_residues
MARRATDIPDDVYVQFVRSLFESRIMLLIGAFSHMLVALMAYLRTERPLFAILSVLFLAVGFWRFSGLRPTDEDLDKLDV
ETARKWEASYVVKGGFQGLLLGLFAFSSVFLYPDQFAELGALAINLASLVTVVGRNYGSARMVVIFTTTMMAPIMAGLLL
RAELPYVVLGLLVLPFGYIVVRSAEEVRNILARAVEEGRKADELARRFDRALNTMSHGLVMFSPQGRVVVANAQAAEFLS
FQSSQQLLGRTLDALLMRGLAGNMLSPKDFDYARAQLRRALSKGRGRKVLLALTDGRYIEFSAREGREELRVLTFEEVTQ
RVEAEAKIRHMARYDSLTNLPNRAYFQELVREFMAAGDESRLCGLAVMDLDDFKTINDTLGHPVGDGLIYAVAERLAEFE
SGSVKVGRFGGDEFMVYFDRVEDETDFANQFNVIFSALQGEVDIAGHLLRIQASGGAVVVPVRDGDLDMITVKADLALYN
AKEQGKNCWRLFEADMDAAFRSRQIMKSELRSAIQSRNLRVVYQPIVDVRTMRISDCEALCRWDHPDLGPVSPAIFIPLA
EEMGLISEISAFVLEAACQECMNWPQHIGVSVNLSAKDFQSGAVIDKVRETLNKSGIAPERLEIEVTETALLYDKDATRL
YIEGLKELGIRIALDDFGTGYSSLSYLHTLPLDRVKIDSSFLHDVTKNPRSHKLLKSVVQLSRGLGLDVTVEGVETFQQL
KLLETSVKPDRVQGFLFGSALSASGIKTMSDVVWYAEDGNIRRDKSLQH
>Mature_768_residues
ARRATDIPDDVYVQFVRSLFESRIMLLIGAFSHMLVALMAYLRTERPLFAILSVLFLAVGFWRFSGLRPTDEDLDKLDVE
TARKWEASYVVKGGFQGLLLGLFAFSSVFLYPDQFAELGALAINLASLVTVVGRNYGSARMVVIFTTTMMAPIMAGLLLR
AELPYVVLGLLVLPFGYIVVRSAEEVRNILARAVEEGRKADELARRFDRALNTMSHGLVMFSPQGRVVVANAQAAEFLSF
QSSQQLLGRTLDALLMRGLAGNMLSPKDFDYARAQLRRALSKGRGRKVLLALTDGRYIEFSAREGREELRVLTFEEVTQR
VEAEAKIRHMARYDSLTNLPNRAYFQELVREFMAAGDESRLCGLAVMDLDDFKTINDTLGHPVGDGLIYAVAERLAEFES
GSVKVGRFGGDEFMVYFDRVEDETDFANQFNVIFSALQGEVDIAGHLLRIQASGGAVVVPVRDGDLDMITVKADLALYNA
KEQGKNCWRLFEADMDAAFRSRQIMKSELRSAIQSRNLRVVYQPIVDVRTMRISDCEALCRWDHPDLGPVSPAIFIPLAE
EMGLISEISAFVLEAACQECMNWPQHIGVSVNLSAKDFQSGAVIDKVRETLNKSGIAPERLEIEVTETALLYDKDATRLY
IEGLKELGIRIALDDFGTGYSSLSYLHTLPLDRVKIDSSFLHDVTKNPRSHKLLKSVVQLSRGLGLDVTVEGVETFQQLK
LLETSVKPDRVQGFLFGSALSASGIKTMSDVVWYAEDGNIRRDKSLQH

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 PAS (PER-ARNT-SIM) domains [H]

Homologues:

Organism=Escherichia coli, GI1787541, Length=442, Percent_Identity=30.0904977375566, Blast_Score=210, Evalue=3e-55,
Organism=Escherichia coli, GI87081921, Length=433, Percent_Identity=28.6374133949192, Blast_Score=182, Evalue=1e-46,
Organism=Escherichia coli, GI1790496, Length=239, Percent_Identity=35.1464435146443, Blast_Score=149, Evalue=7e-37,
Organism=Escherichia coli, GI87081845, Length=250, Percent_Identity=35.6, Blast_Score=136, Evalue=4e-33,
Organism=Escherichia coli, GI226510982, Length=413, Percent_Identity=25.90799031477, Blast_Score=132, Evalue=1e-31,
Organism=Escherichia coli, GI87081743, Length=247, Percent_Identity=33.6032388663968, Blast_Score=126, Evalue=5e-30,
Organism=Escherichia coli, GI1786507, Length=248, Percent_Identity=31.0483870967742, Blast_Score=121, Evalue=2e-28,
Organism=Escherichia coli, GI1788502, Length=219, Percent_Identity=30.1369863013699, Blast_Score=117, Evalue=2e-27,
Organism=Escherichia coli, GI1787055, Length=213, Percent_Identity=31.924882629108, Blast_Score=116, Evalue=5e-27,
Organism=Escherichia coli, GI87081980, Length=243, Percent_Identity=29.6296296296296, Blast_Score=105, Evalue=1e-23,
Organism=Escherichia coli, GI1788849, Length=239, Percent_Identity=30.9623430962343, Blast_Score=102, Evalue=1e-22,
Organism=Escherichia coli, GI87082096, Length=237, Percent_Identity=27.8481012658228, Blast_Score=92, Evalue=2e-19,
Organism=Escherichia coli, GI1788381, Length=427, Percent_Identity=21.7798594847775, Blast_Score=84, Evalue=3e-17,
Organism=Escherichia coli, GI1788956, Length=172, Percent_Identity=33.7209302325581, Blast_Score=82, Evalue=1e-16,
Organism=Escherichia coli, GI1786584, Length=178, Percent_Identity=32.5842696629214, Blast_Score=80, Evalue=4e-16,
Organism=Escherichia coli, GI87081977, Length=171, Percent_Identity=35.672514619883, Blast_Score=80, Evalue=5e-16,
Organism=Escherichia coli, GI1787262, Length=161, Percent_Identity=32.9192546583851, Blast_Score=74, Evalue=4e-14,
Organism=Escherichia coli, GI87081881, Length=187, Percent_Identity=29.9465240641711, Blast_Score=67, Evalue=4e-12,
Organism=Escherichia coli, GI145693134, Length=184, Percent_Identity=28.804347826087, Blast_Score=64, Evalue=5e-11,
Organism=Escherichia coli, GI1787410, Length=139, Percent_Identity=28.0575539568345, Blast_Score=63, Evalue=7e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR000160
- InterPro:   IPR001633
- InterPro:   IPR001610
- InterPro:   IPR000014
- InterPro:   IPR000700
- InterPro:   IPR013656
- InterPro:   IPR013655 [H]

Pfam domain/function: PF00563 EAL; PF00990 GGDEF; PF08447 PAS_3; PF08448 PAS_4 [H]

EC number: NA

Molecular weight: Translated: 85794; Mature: 85663

Theoretical pI: Translated: 5.52; Mature: 5.52

Prosite motif: PS50112 PAS ; PS50883 EAL ; PS50887 GGDEF

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MARRATDIPDDVYVQFVRSLFESRIMLLIGAFSHMLVALMAYLRTERPLFAILSVLFLAV
CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
GFWRFSGLRPTDEDLDKLDVETARKWEASYVVKGGFQGLLLGLFAFSSVFLYPDQFAELG
HHHHHCCCCCCHHHHHHHHHHHHHHHCCCEEECCCHHHHHHHHHHHHHHHCCCHHHHHHH
ALAINLASLVTVVGRNYGSARMVVIFTTTMMAPIMAGLLLRAELPYVVLGLLVLPFGYIV
HHHHHHHHHHHHHHCCCCCCEEEEEEHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHH
VRSAEEVRNILARAVEEGRKADELARRFDRALNTMSHGLVMFSPQGRVVVANAQAAEFLS
EECHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCEEEECCCCCEEEECCHHHHHHH
FQSSQQLLGRTLDALLMRGLAGNMLSPKDFDYARAQLRRALSKGRGRKVLLALTDGRYIE
HHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHCCCCCEEEEEEECCCEEE
FSAREGREELRVLTFEEVTQRVEAEAKIRHMARYDSLTNLPNRAYFQELVREFMAAGDES
EECCCCHHHHHEECHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCC
RLCGLAVMDLDDFKTINDTLGHPVGDGLIYAVAERLAEFESGSVKVGRFGGDEFMVYFDR
CEEEEEEECCHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCCEEEEEECCCEEEEEEEC
VEDETDFANQFNVIFSALQGEVDIAGHLLRIQASGGAVVVPVRDGDLDMITVKADLALYN
CCCCHHHHHHHHHHHHHHCCCEEECCEEEEEEECCCEEEEEEECCCEEEEEEEEHHHEEC
AKEQGKNCWRLFEADMDAAFRSRQIMKSELRSAIQSRNLRVVYQPIVDVRTMRISDCEAL
CHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECHHHHHHEEHHHHHHH
CRWDHPDLGPVSPAIFIPLAEEMGLISEISAFVLEAACQECMNWPQHIGVSVNLSAKDFQ
HCCCCCCCCCCCCEEEEECHHHCCHHHHHHHHHHHHHHHHHCCCHHHCCEEEEECHHHCC
SGAVIDKVRETLNKSGIAPERLEIEVTETALLYDKDATRLYIEGLKELGIRIALDDFGTG
CCHHHHHHHHHHHHCCCCCCEEEEEEEEEEEEECCCCHHHHHHHHHHCCCEEEEECCCCC
YSSLSYLHTLPLDRVKIDSSFLHDVTKNPRSHKLLKSVVQLSRGLGLDVTVEGVETFQQL
HHHHHHHHHCCCCCEECCHHHHHHHHCCCHHHHHHHHHHHHHCCCCCEEEEHHHHHHHHH
KLLETSVKPDRVQGFLFGSALSASGIKTMSDVVWYAEDGNIRRDKSLQH
HHHHHCCCHHHHHHEEECCHHCCCCCHHHHHHEEEECCCCCCCCCCCCC
>Mature Secondary Structure 
ARRATDIPDDVYVQFVRSLFESRIMLLIGAFSHMLVALMAYLRTERPLFAILSVLFLAV
CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
GFWRFSGLRPTDEDLDKLDVETARKWEASYVVKGGFQGLLLGLFAFSSVFLYPDQFAELG
HHHHHCCCCCCHHHHHHHHHHHHHHHCCCEEECCCHHHHHHHHHHHHHHHCCCHHHHHHH
ALAINLASLVTVVGRNYGSARMVVIFTTTMMAPIMAGLLLRAELPYVVLGLLVLPFGYIV
HHHHHHHHHHHHHHCCCCCCEEEEEEHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHH
VRSAEEVRNILARAVEEGRKADELARRFDRALNTMSHGLVMFSPQGRVVVANAQAAEFLS
EECHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCEEEECCCCCEEEECCHHHHHHH
FQSSQQLLGRTLDALLMRGLAGNMLSPKDFDYARAQLRRALSKGRGRKVLLALTDGRYIE
HHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHCCCCCEEEEEEECCCEEE
FSAREGREELRVLTFEEVTQRVEAEAKIRHMARYDSLTNLPNRAYFQELVREFMAAGDES
EECCCCHHHHHEECHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCC
RLCGLAVMDLDDFKTINDTLGHPVGDGLIYAVAERLAEFESGSVKVGRFGGDEFMVYFDR
CEEEEEEECCHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCCEEEEEECCCEEEEEEEC
VEDETDFANQFNVIFSALQGEVDIAGHLLRIQASGGAVVVPVRDGDLDMITVKADLALYN
CCCCHHHHHHHHHHHHHHCCCEEECCEEEEEEECCCEEEEEEECCCEEEEEEEEHHHEEC
AKEQGKNCWRLFEADMDAAFRSRQIMKSELRSAIQSRNLRVVYQPIVDVRTMRISDCEAL
CHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECHHHHHHEEHHHHHHH
CRWDHPDLGPVSPAIFIPLAEEMGLISEISAFVLEAACQECMNWPQHIGVSVNLSAKDFQ
HCCCCCCCCCCCCEEEEECHHHCCHHHHHHHHHHHHHHHHHCCCHHHCCEEEEECHHHCC
SGAVIDKVRETLNKSGIAPERLEIEVTETALLYDKDATRLYIEGLKELGIRIALDDFGTG
CCHHHHHHHHHHHHCCCCCCEEEEEEEEEEEEECCCCHHHHHHHHHHCCCEEEEECCCCC
YSSLSYLHTLPLDRVKIDSSFLHDVTKNPRSHKLLKSVVQLSRGLGLDVTVEGVETFQQL
HHHHHHHHHCCCCCEECCHHHHHHHHCCCHHHHHHHHHHHHHCCCCCEEEEHHHHHHHHH
KLLETSVKPDRVQGFLFGSALSASGIKTMSDVVWYAEDGNIRRDKSLQH
HHHHHCCCHHHHHHEEECCHHCCCCCHHHHHHEEEECCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9163424 [H]