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The map label for this gene is cmoB [H]

Identifier: 110635031

GI number: 110635031

Start: 2929789

End: 2930535

Strand: Reverse

Name: cmoB [H]

Synonym: Meso_2697

Alternate gene names: 110635031

Gene position: 2930535-2929789 (Counterclockwise)

Preceding gene: 110635033

Following gene: 110635030

Centisome position: 66.42

GC content: 59.04

Gene sequence:

>747_bases
ATGAACACAGCATTTCAAGATGATATTGCGCGCCGCATTGCAGAACTCGGTCCCTGGTTCCAGAATATGACGATCGGCGG
TATCGAAACCGCGCCGGACCATTTCCTCGGAGACTATCCCAACATCAAATGGCGCAACTTCGCGCACATCATACCTGATG
ATCTGCAAGGCCGGTCGGTGTTGGACATCGGCTGCAATGCAGGGTTCTATGCAATCGAAATGAAGCGGCGAAATGCCGGC
CGCGTTTTGGGCATCGACAGCGATCCCCATTACCTCCGTCAGGCGGAATTCGCCGCGGAGCAGCTCGGCGCGGATGTCGA
GTTCCGCCAGATGTCCGTCTATGAGCTCGGCCGTTTGAAAGAGAAGTTCGACCTCGTCATCTTCATGGGCGTTCTTTACC
ACCTGCGGCATCCGCTGCTCGCGCTCGATCTCATCTACGAGCATGTCGCAAAGGACCAGATGCTCTTCCAGTGCCTGCAA
AGGGGCTCCGAAGACGTCCCGGAGCTGGAGGAGGATTATCCCTTTTCGGAGTGGGACGTGTTCGACCGGCCGGATTTCCC
AAAGCTTCATTTTGTGGAGCACCGCTATACGGGCGACCCGACCAACTGGTTCTTTCCGAACCGGGCGGCGGTGGAGGCGC
TTCTGCGCAACAGCGGCTTCGAAATCGTCGAGCATCCGGAGCGCGAGGTCTATCTGTGCCGCAGGGGCGAGCGGGGCTTT
GCGGTCGACCCGCCGCCGGTCGGCTGA

Upstream 100 bases:

>100_bases
GGAACAATCCATACTCTCGAAAGTTTCCGCCAGAGCAGCAAAGACTTAGCTTCCTGCGGACGAGGGGACAGTCTGCCCAG
GTTGAGGAAATCAGCACACG

Downstream 100 bases:

>100_bases
TTTCGGCTGATCTCCAGAACAATCCGCTTTCGTATCGGTTGGGCGGTGAGCCGGGCGGGGTTCCGGCAACCAACGGCAGT
TCCGATATGCAGACAGAGAT

Product: methyltransferase type 12

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 248; Mature: 248

Protein sequence:

>248_residues
MNTAFQDDIARRIAELGPWFQNMTIGGIETAPDHFLGDYPNIKWRNFAHIIPDDLQGRSVLDIGCNAGFYAIEMKRRNAG
RVLGIDSDPHYLRQAEFAAEQLGADVEFRQMSVYELGRLKEKFDLVIFMGVLYHLRHPLLALDLIYEHVAKDQMLFQCLQ
RGSEDVPELEEDYPFSEWDVFDRPDFPKLHFVEHRYTGDPTNWFFPNRAAVEALLRNSGFEIVEHPEREVYLCRRGERGF
AVDPPPVG

Sequences:

>Translated_248_residues
MNTAFQDDIARRIAELGPWFQNMTIGGIETAPDHFLGDYPNIKWRNFAHIIPDDLQGRSVLDIGCNAGFYAIEMKRRNAG
RVLGIDSDPHYLRQAEFAAEQLGADVEFRQMSVYELGRLKEKFDLVIFMGVLYHLRHPLLALDLIYEHVAKDQMLFQCLQ
RGSEDVPELEEDYPFSEWDVFDRPDFPKLHFVEHRYTGDPTNWFFPNRAAVEALLRNSGFEIVEHPEREVYLCRRGERGF
AVDPPPVG
>Mature_248_residues
MNTAFQDDIARRIAELGPWFQNMTIGGIETAPDHFLGDYPNIKWRNFAHIIPDDLQGRSVLDIGCNAGFYAIEMKRRNAG
RVLGIDSDPHYLRQAEFAAEQLGADVEFRQMSVYELGRLKEKFDLVIFMGVLYHLRHPLLALDLIYEHVAKDQMLFQCLQ
RGSEDVPELEEDYPFSEWDVFDRPDFPKLHFVEHRYTGDPTNWFFPNRAAVEALLRNSGFEIVEHPEREVYLCRRGERGF
AVDPPPVG

Specific function: Catalyzes the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at position 34 in tRNA [H]

COG id: COG0500

COG function: function code QR; SAM-dependent methyltransferases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the methyltransferase superfamily. CmoB family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010017 [H]

Pfam domain/function: PF08003 Methyltransf_9 [H]

EC number: NA

Molecular weight: Translated: 28747; Mature: 28747

Theoretical pI: Translated: 4.77; Mature: 4.77

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNTAFQDDIARRIAELGPWFQNMTIGGIETAPDHFLGDYPNIKWRNFAHIIPDDLQGRSV
CCCCHHHHHHHHHHHHCCHHHCCEECCCCCCCHHHCCCCCCCCCCCEEECCCCCCCCCEE
LDIGCNAGFYAIEMKRRNAGRVLGIDSDPHYLRQAEFAAEQLGADVEFRQMSVYELGRLK
EEECCCCCEEEEEEEECCCCCEEEECCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH
EKFDLVIFMGVLYHLRHPLLALDLIYEHVAKDQMLFQCLQRGSEDVPELEEDYPFSEWDV
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHCCCCCCCCC
FDRPDFPKLHFVEHRYTGDPTNWFFPNRAAVEALLRNSGFEIVEHPEREVYLCRRGERGF
CCCCCCCCEEEEEEEECCCCCCCCCCCHHHHHHHHHCCCCHHHCCCCCEEEEEECCCCCC
AVDPPPVG
CCCCCCCC
>Mature Secondary Structure
MNTAFQDDIARRIAELGPWFQNMTIGGIETAPDHFLGDYPNIKWRNFAHIIPDDLQGRSV
CCCCHHHHHHHHHHHHCCHHHCCEECCCCCCCHHHCCCCCCCCCCCEEECCCCCCCCCEE
LDIGCNAGFYAIEMKRRNAGRVLGIDSDPHYLRQAEFAAEQLGADVEFRQMSVYELGRLK
EEECCCCCEEEEEEEECCCCCEEEECCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH
EKFDLVIFMGVLYHLRHPLLALDLIYEHVAKDQMLFQCLQRGSEDVPELEEDYPFSEWDV
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHCCCCCCCCC
FDRPDFPKLHFVEHRYTGDPTNWFFPNRAAVEALLRNSGFEIVEHPEREVYLCRRGERGF
CCCCCCCCEEEEEEEECCCCCCCCCCCHHHHHHHHHCCCCHHHCCCCCEEEEEECCCCCC
AVDPPPVG
CCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA